Wall clock time and date at job start Tue Mar 31 2020 19:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34331 * 126.44283 * 2 1 4 4 N 1.34478 * 107.66961 * 179.72792 * 3 2 1 5 5 C 1.30257 * 108.70092 * 0.42103 * 4 3 2 6 6 C 1.50697 * 125.62549 * 179.83828 * 5 4 3 7 7 O 1.42902 * 109.47045 * 89.69497 * 6 5 4 8 8 C 1.42903 * 114.00221 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47130 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99952 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99578 * 179.97438 * 9 8 7 12 12 C 1.47016 * 125.65001 * 359.69906 * 11 9 8 13 13 C 1.54337 * 107.26542 * 178.84984 * 12 11 9 14 14 C 1.55161 * 103.01805 * 338.13487 * 13 12 11 15 15 H 1.08999 * 111.03600 * 277.22200 * 14 13 12 16 16 C 1.53000 * 111.00036 * 153.37953 * 14 13 12 17 17 N 1.46500 * 109.46645 * 181.34871 * 16 14 13 18 18 C 1.46500 * 119.99787 * 90.01026 * 17 16 14 19 19 C 1.36941 * 120.00312 * 270.00075 * 17 16 14 20 20 H 1.07998 * 119.99602 * 23.32134 * 19 17 16 21 21 C 1.38810 * 119.99919 * 203.31751 * 19 17 16 22 22 N 1.31616 * 120.00324 * 14.42931 * 21 19 17 23 23 Si 1.86799 * 119.99914 * 194.42164 * 21 19 17 24 24 H 1.48500 * 109.47301 * 90.00418 * 23 21 19 25 25 H 1.48500 * 109.47437 * 210.00339 * 23 21 19 26 26 H 1.48498 * 109.47098 * 330.00154 * 23 21 19 27 27 C 1.47422 * 125.64358 * 180.02562 * 11 9 8 28 28 O 1.33969 * 108.75768 * 359.57925 * 5 4 3 29 29 H 1.08995 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46731 * 300.00179 * 1 2 3 31 31 H 1.09000 * 109.46857 * 59.99816 * 1 2 3 32 32 H 1.07998 * 126.16702 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46815 * 329.70133 * 6 5 4 34 34 H 1.08997 * 109.47655 * 209.69467 * 6 5 4 35 35 H 1.08996 * 109.46660 * 300.00256 * 8 7 6 36 36 H 1.09005 * 109.46968 * 60.00154 * 8 7 6 37 37 H 1.09006 * 109.88062 * 298.39038 * 12 11 9 38 38 H 1.08997 * 109.88240 * 59.55597 * 12 11 9 39 39 H 1.08998 * 110.84600 * 219.66973 * 13 12 11 40 40 H 1.08993 * 110.66936 * 96.52036 * 13 12 11 41 41 H 1.09000 * 109.47641 * 301.35397 * 16 14 13 42 42 H 1.09003 * 109.47194 * 61.35728 * 16 14 13 43 43 H 1.09003 * 109.47547 * 95.17999 * 18 17 16 44 44 H 1.08998 * 109.47047 * 215.18072 * 18 17 16 45 45 H 1.09003 * 109.46829 * 335.17706 * 18 17 16 46 46 H 0.97005 * 120.00545 * 180.02562 * 22 21 19 47 47 H 1.08998 * 110.37140 * 322.93388 * 27 11 9 48 48 H 1.09001 * 110.36549 * 85.25740 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 0.0061 5 6 3.5766 -0.6547 0.0007 6 6 4.8004 -1.5340 0.0012 7 8 5.1869 -1.8117 1.3486 8 6 6.3441 -2.6424 1.4620 9 6 6.6596 -2.8684 2.9181 10 8 5.9619 -2.3677 3.7745 11 7 7.7166 -3.6277 3.2687 12 6 8.6369 -4.2972 2.3380 13 6 9.7014 -5.0221 3.1885 14 6 9.6467 -4.2612 4.5396 15 1 10.2450 -3.3509 4.5005 16 6 10.0956 -5.1599 5.6936 17 7 10.0005 -4.4198 6.9543 18 6 8.7601 -4.4556 7.7329 19 6 11.0712 -3.6947 7.4051 20 1 11.8218 -3.3505 6.7090 21 6 11.1917 -3.4022 8.7567 22 7 10.4540 -4.0443 9.6374 23 14 12.4012 -2.0972 9.3256 24 1 11.7258 -0.7750 9.3539 25 1 12.8880 -2.4336 10.6876 26 1 13.5512 -2.0456 8.3876 27 6 8.1372 -3.9299 4.6489 28 8 2.3075 -1.0839 0.0004 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9822 2.1112 -0.0004 33 1 5.6149 -1.0232 -0.5125 34 1 4.5764 -2.4689 -0.5125 35 1 6.1525 -3.6003 0.9784 36 1 7.1905 -2.1543 0.9787 37 1 8.0902 -5.0189 1.7310 38 1 9.1175 -3.5586 1.6965 39 1 10.6882 -4.9315 2.7345 40 1 9.4361 -6.0703 3.3252 41 1 9.4541 -6.0400 5.7396 42 1 11.1278 -5.4707 5.5318 43 1 8.8329 -5.2293 8.4972 44 1 8.6022 -3.4880 8.2094 45 1 7.9222 -4.6758 7.0714 46 1 10.5379 -3.8397 10.5819 47 1 7.9848 -3.0621 5.2906 48 1 7.5870 -4.7886 5.0337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713753666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:47 Heat of formation + Delta-G solvation = -21.626243 kcal Electronic energy + Delta-G solvation = -28570.584147 eV Core-core repulsion = 24435.881150 eV Total energy + Delta-G solvation = -4134.702997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.66034 -40.05684 -38.39506 -37.21352 -35.32550 -35.06155 -33.13670 -32.39798 -30.75596 -30.04380 -28.87015 -27.80385 -26.12054 -25.55072 -24.97554 -23.04437 -22.66092 -21.44638 -21.15100 -19.83129 -19.40863 -17.88658 -17.42857 -17.01920 -16.70256 -16.57661 -16.34328 -15.74011 -15.47331 -14.95510 -14.82128 -14.40106 -14.26396 -13.68955 -13.63359 -13.54829 -13.53442 -13.08269 -12.90547 -12.81375 -12.70363 -12.42519 -12.22355 -12.15572 -11.83016 -11.63515 -11.44946 -10.99927 -10.91897 -10.86084 -10.71912 -10.48480 -10.35585 -10.21940 -10.04159 -9.89097 -9.81442 -9.70323 -9.07908 -8.53896 -8.49327 -6.70943 -5.68712 -3.16305 0.95954 2.05149 2.32989 2.64429 2.78931 3.41293 3.47768 3.48512 3.49076 3.96418 4.32514 4.41213 4.52453 4.57445 4.62178 4.69850 4.71608 4.78720 4.83319 4.94422 4.97999 5.01298 5.08557 5.14867 5.37569 5.45578 5.48216 5.49645 5.67677 5.68376 5.91387 5.93071 5.93834 6.04184 6.13367 6.25753 6.38432 6.44300 6.61424 6.69385 6.80895 6.87631 7.37881 7.41496 7.58435 7.76779 7.84166 8.22869 8.43392 9.26664 9.90594 10.39407 11.35559 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.001943 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.328209 B =14408.807863 C =15148.847857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.187 3.813 6 C 0.162 3.838 7 O -0.357 6.357 8 C 0.052 3.948 9 C 0.525 3.475 10 O -0.517 6.517 11 N -0.618 5.618 12 C 0.098 3.902 13 C -0.128 4.128 14 C -0.118 4.118 15 H 0.083 0.917 16 C 0.163 3.837 17 N -0.601 5.601 18 C 0.159 3.841 19 C -0.256 4.256 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.905 5.905 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.122 3.878 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.038 0.962 45 H 0.001 0.999 46 H 0.252 0.748 47 H 0.081 0.919 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 1.453 -25.692 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.019 4.019 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.028 4.028 9 C 0.312 3.688 10 O -0.392 6.392 11 N -0.355 5.355 12 C -0.025 4.025 13 C -0.167 4.167 14 C -0.140 4.140 15 H 0.101 0.899 16 C 0.035 3.965 17 N -0.323 5.323 18 C 0.014 3.986 19 C -0.386 4.386 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.550 5.550 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.001 3.999 28 O -0.081 6.081 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.223 2.153 -24.854 28.717 hybrid contribution 0.159 0.365 0.172 0.434 sum -14.064 2.518 -24.682 28.519 Atomic orbital electron populations 1.20320 0.83707 1.04561 1.04066 1.23588 0.95207 0.84515 1.05944 1.23121 0.87572 1.00586 1.07144 1.70420 1.23331 1.09049 1.15962 1.25500 0.83865 0.89947 1.02636 1.20470 0.89104 0.96400 0.85625 1.88089 1.45622 1.69843 1.23843 1.22244 0.89235 0.95699 0.95626 1.19675 0.80229 0.78846 0.90083 1.90771 1.48346 1.48334 1.51763 1.48594 1.27879 1.49592 1.09413 1.22094 0.91520 0.96092 0.92784 1.22674 0.98048 0.99754 0.96189 1.23245 0.94630 1.00933 0.95241 0.89892 1.20651 0.98892 0.91650 0.85350 1.43885 1.11706 1.55827 1.20878 1.20850 0.84211 1.00781 0.92722 1.19147 1.02167 1.26412 0.90831 0.91491 1.25019 0.98929 0.99666 0.95991 1.70070 1.42805 1.41271 1.00837 0.86288 0.80734 0.81872 0.77825 1.21517 1.21815 1.20514 1.22386 0.94893 1.01341 0.81289 1.84392 1.17708 1.36632 1.69331 0.90215 0.89001 0.89170 0.79666 0.88382 0.89904 0.89866 0.89693 0.91694 0.91613 0.90156 0.90594 0.94353 0.92840 0.95096 0.94293 0.98021 0.93769 0.90008 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 36.01 0.38 0.04 16 2 C -0.04 -0.37 7.39 -35.69 -0.26 -0.63 16 3 C -0.04 -0.46 11.80 -17.77 -0.21 -0.67 16 4 N -0.46 -5.94 11.29 -11.10 -0.13 -6.07 16 5 C 0.19 2.24 7.97 -12.95 -0.10 2.14 16 6 C 0.16 1.47 6.56 36.00 0.24 1.71 16 7 O -0.36 -4.70 9.86 -55.14 -0.54 -5.24 16 8 C 0.05 0.54 5.61 36.01 0.20 0.74 16 9 C 0.53 8.21 7.93 -10.98 -0.09 8.12 16 10 O -0.52 -10.87 16.76 -14.35 -0.24 -11.11 16 11 N -0.62 -8.86 3.33 -170.50 -0.57 -9.43 16 12 C 0.10 0.98 6.49 -3.06 -0.02 0.96 16 13 C -0.13 -1.42 6.42 -24.89 -0.16 -1.58 16 14 C -0.12 -1.89 3.30 -88.46 -0.29 -2.18 16 15 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 16 C 0.16 3.11 5.17 -4.04 -0.02 3.09 16 17 N -0.60 -14.78 2.84 -181.12 -0.51 -15.29 16 18 C 0.16 3.95 8.61 59.85 0.52 4.47 16 19 C -0.26 -6.97 9.64 -15.06 -0.15 -7.11 16 20 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 21 C 0.00 0.07 5.07 -17.43 -0.09 -0.02 16 22 N -0.91 -26.75 10.81 55.49 0.60 -26.15 16 23 Si 0.90 22.14 29.58 -169.99 -5.03 17.11 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.12 2.08 4.95 -2.52 -0.01 2.07 16 28 O -0.19 -2.26 10.78 5.36 0.06 -2.20 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.19 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 41 H 0.04 0.69 8.03 -51.93 -0.42 0.27 16 42 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 43 H 0.03 0.83 7.33 -51.93 -0.38 0.45 16 44 H 0.04 1.06 7.40 -51.93 -0.38 0.67 16 45 H 0.00 0.03 6.19 -51.93 -0.32 -0.29 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 47 H 0.08 1.69 8.04 -51.93 -0.42 1.27 16 48 H 0.07 1.14 7.20 -51.93 -0.37 0.76 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -37.66 397.96 -8.19 -45.85 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -7.75 Total: -4.63 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.07 Total: 11.15 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.61 Total: -56.94 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.73 Total: -18.55 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.66 -8.19 -45.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713753666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.224 kcal (2) G-P(sol) polarization free energy of solvation -37.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds