Wall clock time and date at job start Tue Mar 31 2020 19:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34331 * 126.44283 * 2 1 4 4 N 1.34478 * 107.66961 * 179.72792 * 3 2 1 5 5 C 1.30257 * 108.70092 * 0.42103 * 4 3 2 6 6 C 1.50697 * 125.62549 * 179.83828 * 5 4 3 7 7 O 1.42902 * 109.47045 * 89.69497 * 6 5 4 8 8 C 1.42903 * 114.00221 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47130 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99952 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99578 * 179.97438 * 9 8 7 12 12 C 1.47016 * 125.65001 * 359.69906 * 11 9 8 13 13 C 1.54337 * 107.26542 * 178.84984 * 12 11 9 14 14 C 1.55161 * 103.01805 * 338.13487 * 13 12 11 15 15 H 1.08999 * 111.03600 * 277.22200 * 14 13 12 16 16 C 1.53000 * 111.00036 * 153.37953 * 14 13 12 17 17 N 1.46500 * 109.46645 * 181.34871 * 16 14 13 18 18 C 1.46500 * 119.99787 * 90.01026 * 17 16 14 19 19 C 1.36941 * 120.00312 * 270.00075 * 17 16 14 20 20 H 1.07998 * 119.99602 * 23.32134 * 19 17 16 21 21 C 1.38810 * 119.99919 * 203.31751 * 19 17 16 22 22 N 1.31616 * 120.00324 * 14.42931 * 21 19 17 23 23 Si 1.86799 * 119.99914 * 194.42164 * 21 19 17 24 24 H 1.48500 * 109.47301 * 90.00418 * 23 21 19 25 25 H 1.48500 * 109.47437 * 210.00339 * 23 21 19 26 26 H 1.48498 * 109.47098 * 330.00154 * 23 21 19 27 27 C 1.47422 * 125.64358 * 180.02562 * 11 9 8 28 28 O 1.33969 * 108.75768 * 359.57925 * 5 4 3 29 29 H 1.08995 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46731 * 300.00179 * 1 2 3 31 31 H 1.09000 * 109.46857 * 59.99816 * 1 2 3 32 32 H 1.07998 * 126.16702 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46815 * 329.70133 * 6 5 4 34 34 H 1.08997 * 109.47655 * 209.69467 * 6 5 4 35 35 H 1.08996 * 109.46660 * 300.00256 * 8 7 6 36 36 H 1.09005 * 109.46968 * 60.00154 * 8 7 6 37 37 H 1.09006 * 109.88062 * 298.39038 * 12 11 9 38 38 H 1.08997 * 109.88240 * 59.55597 * 12 11 9 39 39 H 1.08998 * 110.84600 * 219.66973 * 13 12 11 40 40 H 1.08993 * 110.66936 * 96.52036 * 13 12 11 41 41 H 1.09000 * 109.47641 * 301.35397 * 16 14 13 42 42 H 1.09003 * 109.47194 * 61.35728 * 16 14 13 43 43 H 1.09003 * 109.47547 * 95.17999 * 18 17 16 44 44 H 1.08998 * 109.47047 * 215.18072 * 18 17 16 45 45 H 1.09003 * 109.46829 * 335.17706 * 18 17 16 46 46 H 0.97005 * 120.00545 * 180.02562 * 22 21 19 47 47 H 1.08998 * 110.37140 * 322.93388 * 27 11 9 48 48 H 1.09001 * 110.36549 * 85.25740 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 0.0061 5 6 3.5766 -0.6547 0.0007 6 6 4.8004 -1.5340 0.0012 7 8 5.1869 -1.8117 1.3486 8 6 6.3441 -2.6424 1.4620 9 6 6.6596 -2.8684 2.9181 10 8 5.9619 -2.3677 3.7745 11 7 7.7166 -3.6277 3.2687 12 6 8.6369 -4.2972 2.3380 13 6 9.7014 -5.0221 3.1885 14 6 9.6467 -4.2612 4.5396 15 1 10.2450 -3.3509 4.5005 16 6 10.0956 -5.1599 5.6936 17 7 10.0005 -4.4198 6.9543 18 6 8.7601 -4.4556 7.7329 19 6 11.0712 -3.6947 7.4051 20 1 11.8218 -3.3505 6.7090 21 6 11.1917 -3.4022 8.7567 22 7 10.4540 -4.0443 9.6374 23 14 12.4012 -2.0972 9.3256 24 1 11.7258 -0.7750 9.3539 25 1 12.8880 -2.4336 10.6876 26 1 13.5512 -2.0456 8.3876 27 6 8.1372 -3.9299 4.6489 28 8 2.3075 -1.0839 0.0004 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9822 2.1112 -0.0004 33 1 5.6149 -1.0232 -0.5125 34 1 4.5764 -2.4689 -0.5125 35 1 6.1525 -3.6003 0.9784 36 1 7.1905 -2.1543 0.9787 37 1 8.0902 -5.0189 1.7310 38 1 9.1175 -3.5586 1.6965 39 1 10.6882 -4.9315 2.7345 40 1 9.4361 -6.0703 3.3252 41 1 9.4541 -6.0400 5.7396 42 1 11.1278 -5.4707 5.5318 43 1 8.8329 -5.2293 8.4972 44 1 8.6022 -3.4880 8.2094 45 1 7.9222 -4.6758 7.0714 46 1 10.5379 -3.8397 10.5819 47 1 7.9848 -3.0621 5.2906 48 1 7.5870 -4.7886 5.0337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713753666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:46 Heat of formation + Delta-G solvation = -49.782784 kcal Electronic energy + Delta-G solvation = -28571.805106 eV Core-core repulsion = 24435.881150 eV Total energy + Delta-G solvation = -4135.923956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.41815 -41.18827 -39.38085 -38.41298 -37.08240 -35.86738 -34.03202 -33.72068 -32.40960 -30.77821 -29.98224 -28.89138 -27.99399 -26.77426 -26.04617 -24.23403 -23.40913 -22.81506 -22.19450 -21.20862 -20.47478 -18.77153 -18.62606 -18.22874 -17.92453 -17.59794 -17.21571 -16.89288 -16.65477 -16.44247 -15.77980 -15.47907 -15.40547 -15.17270 -14.91630 -14.53877 -14.38194 -14.21843 -13.90318 -13.89876 -13.72606 -13.31891 -13.31001 -13.21118 -13.00722 -12.94601 -12.85470 -12.56214 -12.47692 -12.40212 -12.17496 -12.01318 -11.77950 -11.66656 -11.60443 -11.41209 -10.95003 -10.92509 -10.62575 -9.78400 -9.68038 -8.75922 -7.81840 -5.31091 0.21085 1.31181 1.43834 1.47065 1.51692 1.54288 1.62037 1.82782 2.50417 2.76407 3.19929 3.30943 3.47632 3.66857 3.75700 3.78903 3.92483 3.98735 4.06365 4.08334 4.14606 4.19501 4.25480 4.38034 4.45738 4.54669 4.60411 4.66301 4.67576 4.72397 4.79694 4.92824 4.94347 4.97248 5.03514 5.09719 5.12898 5.20372 5.24050 5.31105 5.38713 5.52857 5.63476 5.67654 5.82860 6.33900 6.51406 6.60825 7.09557 7.15181 7.88565 8.32881 9.20947 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.001943 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.328209 B =14408.807863 C =15148.847857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.069 4.069 4 N -0.491 5.491 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.402 6.402 8 C 0.061 3.939 9 C 0.512 3.488 10 O -0.590 6.590 11 N -0.617 5.617 12 C 0.094 3.906 13 C -0.116 4.116 14 C -0.109 4.109 15 H 0.062 0.938 16 C 0.160 3.840 17 N -0.618 5.618 18 C 0.178 3.822 19 C -0.256 4.256 20 H 0.074 0.926 21 C -0.059 4.059 22 N -0.940 5.940 23 Si 0.965 3.035 24 H -0.294 1.294 25 H -0.295 1.295 26 H -0.262 1.262 27 C 0.125 3.875 28 O -0.209 6.209 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.209 0.791 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.006 0.994 44 H 0.003 0.997 45 H 0.027 0.973 46 H 0.246 0.754 47 H 0.031 0.969 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.747 0.594 -29.742 32.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.207 4.207 4 N -0.223 5.223 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.320 6.320 8 C -0.017 4.017 9 C 0.302 3.698 10 O -0.470 6.470 11 N -0.351 5.351 12 C -0.027 4.027 13 C -0.154 4.154 14 C -0.131 4.131 15 H 0.081 0.919 16 C 0.033 3.967 17 N -0.341 5.341 18 C 0.033 3.967 19 C -0.386 4.386 20 H 0.092 0.908 21 C -0.253 4.253 22 N -0.587 5.587 23 Si 0.793 3.207 24 H -0.222 1.222 25 H -0.222 1.222 26 H -0.186 1.186 27 C 0.002 3.998 28 O -0.096 6.096 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.226 0.774 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.024 0.976 44 H 0.022 0.978 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.726 1.259 -28.999 32.108 hybrid contribution -0.049 0.623 1.371 1.506 sum -13.775 1.882 -27.628 30.929 Atomic orbital electron populations 1.20560 0.80577 1.05451 1.05865 1.24444 0.96888 0.83789 1.04074 1.23610 0.87079 1.02107 1.07938 1.70386 1.24930 1.10029 1.16936 1.26187 0.84783 0.90253 1.02914 1.20832 0.88682 0.97917 0.84177 1.88019 1.46777 1.70751 1.26489 1.22359 0.89840 0.98011 0.91538 1.20815 0.79345 0.77575 0.92108 1.90735 1.50877 1.51220 1.54201 1.48677 1.28182 1.49355 1.08909 1.22475 0.90783 0.97354 0.92083 1.22689 1.00098 0.99843 0.92749 1.22910 0.92974 1.00137 0.97113 0.91911 1.20886 0.99747 0.92234 0.83785 1.44131 1.10824 1.56557 1.22589 1.20507 0.85702 0.97874 0.92624 1.19520 1.02321 1.25853 0.90951 0.90788 1.25805 1.01198 1.01934 0.96406 1.70230 1.44858 1.43003 1.00648 0.85293 0.79159 0.78878 0.77322 1.22178 1.22191 1.18649 1.22090 0.95954 0.98898 0.82852 1.84396 1.18063 1.37597 1.69519 0.89755 0.87698 0.86649 0.77412 0.86203 0.86359 0.85400 0.86191 0.87686 0.88775 0.87660 0.89123 0.92940 0.92260 0.97612 0.97840 0.95430 0.94460 0.95008 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.43 71.24 0.74 0.22 16 2 C -0.04 -0.70 7.39 24.79 0.18 -0.52 16 3 C -0.07 -1.39 11.80 83.39 0.98 -0.41 16 4 N -0.49 -12.80 11.29 -303.83 -3.43 -16.23 16 5 C 0.16 3.87 7.97 88.34 0.70 4.57 16 6 C 0.16 2.58 6.56 71.23 0.47 3.04 16 7 O -0.40 -10.02 9.86 -129.94 -1.28 -11.31 16 8 C 0.06 1.07 5.61 71.24 0.40 1.47 16 9 C 0.51 15.57 7.93 87.66 0.69 16.27 16 10 O -0.59 -25.95 16.76 16.01 0.27 -25.68 16 11 N -0.62 -16.53 3.33 -811.74 -2.70 -19.23 16 12 C 0.09 1.39 6.49 86.73 0.56 1.96 16 13 C -0.12 -2.04 6.42 31.79 0.20 -1.84 16 14 C -0.11 -3.35 3.30 -9.39 -0.03 -3.38 16 15 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 16 C 0.16 5.95 5.17 86.38 0.45 6.40 16 17 N -0.62 -31.01 2.84 -726.93 -2.06 -33.08 16 18 C 0.18 9.28 8.61 127.77 1.10 10.38 16 19 C -0.26 -14.14 9.64 84.03 0.81 -13.33 16 20 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 21 C -0.06 -3.38 5.07 84.86 0.43 -2.95 16 22 N -0.94 -57.71 10.81 21.65 0.23 -57.48 16 23 Si 0.96 46.46 29.58 68.60 2.03 48.49 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.12 4.29 4.95 86.86 0.43 4.72 16 28 O -0.21 -4.76 10.78 -3.72 -0.04 -4.80 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.13 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.40 8.04 -2.39 -0.02 1.38 16 41 H 0.05 1.81 8.03 -2.39 -0.02 1.79 16 42 H 0.06 2.14 8.04 -2.39 -0.02 2.13 16 43 H 0.01 0.32 7.33 -2.39 -0.02 0.30 16 44 H 0.00 0.16 7.40 -2.39 -0.02 0.14 16 45 H 0.03 1.25 6.19 -2.39 -0.01 1.24 16 46 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 47 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 48 H 0.06 2.09 7.20 -2.39 -0.02 2.07 16 Total: -1.00 -90.67 397.96 2.09 -88.58 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 0.95 Total: 4.13 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 8.13 Total: 26.61 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -7.96 Total: -126.02 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -1.05 Total: -41.79 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -90.67 2.09 -88.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713753666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.793 kcal (2) G-P(sol) polarization free energy of solvation -90.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds