Wall clock time and date at job start Tue Mar 31 2020 19:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34334 * 126.43930 * 2 1 4 4 N 1.34476 * 107.66859 * 179.73357 * 3 2 1 5 5 C 1.30255 * 108.70117 * 0.41635 * 4 3 2 6 6 C 1.50701 * 125.62149 * 179.84277 * 5 4 3 7 7 O 1.42903 * 109.47134 * 89.69879 * 6 5 4 8 8 C 1.42894 * 114.00032 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47320 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99655 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00222 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64654 * 359.96384 * 11 9 8 13 13 C 1.54326 * 107.27107 * 181.09553 * 12 11 9 14 14 C 1.55156 * 102.94345 * 22.18512 * 13 12 11 15 15 H 1.09006 * 111.00212 * 82.57400 * 14 13 12 16 16 C 1.52999 * 111.00659 * 206.42874 * 14 13 12 17 17 N 1.46499 * 109.47171 * 178.65178 * 16 14 13 18 18 C 1.46503 * 119.99840 * 89.99715 * 17 16 14 19 19 C 1.36938 * 119.99967 * 269.99881 * 17 16 14 20 20 H 1.07996 * 119.99677 * 22.74234 * 19 17 16 21 21 C 1.38818 * 119.99952 * 202.73951 * 19 17 16 22 22 N 1.31618 * 119.99735 * 13.37392 * 21 19 17 23 23 Si 1.86796 * 120.00020 * 193.37274 * 21 19 17 24 24 H 1.48500 * 109.47330 * 59.99945 * 23 21 19 25 25 H 1.48499 * 109.46932 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46702 * 299.99895 * 23 21 19 27 27 C 1.47423 * 125.64882 * 179.97438 * 11 9 8 28 28 O 1.33973 * 108.75913 * 359.58372 * 5 4 3 29 29 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47389 * 299.99546 * 1 2 3 31 31 H 1.09000 * 109.47855 * 60.00036 * 1 2 3 32 32 H 1.07999 * 126.16310 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47272 * 329.69251 * 6 5 4 34 34 H 1.09007 * 109.46941 * 209.69519 * 6 5 4 35 35 H 1.09005 * 109.47199 * 59.99448 * 8 7 6 36 36 H 1.09002 * 109.47026 * 299.99889 * 8 7 6 37 37 H 1.09008 * 109.87858 * 300.50625 * 12 11 9 38 38 H 1.08993 * 109.88713 * 61.52122 * 12 11 9 39 39 H 1.09004 * 110.71580 * 263.82986 * 13 12 11 40 40 H 1.08996 * 110.72366 * 140.55323 * 13 12 11 41 41 H 1.09003 * 109.47123 * 298.64857 * 16 14 13 42 42 H 1.08997 * 109.46805 * 58.64915 * 16 14 13 43 43 H 1.09001 * 109.47033 * 95.13276 * 18 17 16 44 44 H 1.09007 * 109.47001 * 215.12802 * 18 17 16 45 45 H 1.08998 * 109.47466 * 335.12710 * 18 17 16 46 46 H 0.97001 * 120.00107 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.36401 * 37.00748 * 27 11 9 48 48 H 1.08998 * 110.46638 * 274.72566 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6480 0.0060 5 6 3.5766 -0.6545 0.0006 6 6 4.8006 -1.5337 0.0010 7 8 5.1871 -1.8114 1.3485 8 6 6.3443 -2.6420 1.4618 9 6 6.6599 -2.8680 2.9179 10 8 5.9621 -2.3675 3.7743 11 7 7.7169 -3.6272 3.2684 12 6 8.6406 -4.2921 2.3376 13 6 9.6701 -5.0656 3.1881 14 6 8.9324 -5.2544 4.5400 15 1 8.2595 -6.1111 4.5015 16 6 9.9280 -5.3931 5.6934 17 7 9.1971 -5.5371 6.9548 18 6 8.8263 -6.8694 7.4385 19 6 8.8605 -4.4265 7.6817 20 1 8.7889 -3.4646 7.1960 21 6 8.6112 -4.5372 9.0428 22 7 8.9477 -5.6348 9.6864 23 14 7.7980 -3.1282 9.9610 24 1 6.4615 -2.8595 9.3722 25 1 7.6446 -3.4932 11.3922 26 1 8.6422 -1.9116 9.8486 27 6 8.1383 -3.9286 4.6486 28 8 2.3075 -1.0839 0.0003 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.9820 2.1113 -0.0004 33 1 5.6150 -1.0230 -0.5127 34 1 4.5765 -2.4687 -0.5127 35 1 7.1907 -2.1538 0.9784 36 1 6.1528 -3.5999 0.9782 37 1 8.0902 -4.9850 1.7010 38 1 9.1478 -3.5479 1.7237 39 1 10.5781 -4.4778 3.3232 40 1 9.8978 -6.0304 2.7350 41 1 10.5509 -6.2730 5.5319 42 1 10.5583 -4.5050 5.7380 43 1 9.5818 -7.2248 8.1392 44 1 7.8604 -6.8176 7.9411 45 1 8.7606 -7.5569 6.5953 46 1 8.7732 -5.7124 10.6374 47 1 7.2675 -4.0596 5.2910 48 1 8.7771 -3.1340 5.0342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713753667.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:51 Heat of formation + Delta-G solvation = -21.006646 kcal Electronic energy + Delta-G solvation = -28728.468156 eV Core-core repulsion = 24593.792027 eV Total energy + Delta-G solvation = -4134.676129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.63712 -39.98971 -38.35240 -37.16075 -35.31220 -35.03893 -33.11087 -32.35783 -30.72443 -29.99200 -28.89730 -27.75773 -25.80876 -25.64056 -25.04212 -23.04144 -22.63689 -21.42475 -21.20974 -19.68052 -19.31435 -17.85481 -17.41830 -16.89752 -16.86774 -16.59452 -16.34912 -15.55384 -15.35469 -14.86064 -14.72237 -14.66271 -14.02071 -13.69550 -13.61977 -13.52690 -13.38681 -13.04465 -12.93845 -12.80992 -12.71849 -12.41650 -12.16535 -12.08207 -11.80320 -11.61216 -11.32181 -11.16444 -10.84330 -10.74111 -10.64315 -10.40956 -10.37126 -10.19370 -10.14783 -9.89365 -9.73300 -9.63259 -9.05480 -8.48746 -8.43455 -6.70294 -5.67432 -3.14123 0.98439 2.08050 2.35310 2.71600 2.84524 3.46286 3.50558 3.52681 3.55926 4.00234 4.35080 4.45551 4.55929 4.60338 4.64535 4.72236 4.74831 4.82285 4.86347 4.96656 5.00254 5.03880 5.10769 5.17153 5.41133 5.48567 5.50485 5.54248 5.70830 5.71833 5.90800 5.95138 5.96996 6.12041 6.17395 6.37356 6.44997 6.52033 6.60087 6.71786 6.77291 6.90976 7.39955 7.40769 7.66439 7.76049 7.86637 8.30752 8.44395 9.28595 9.92040 10.40049 11.37161 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.002246 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.531977 B =12465.017599 C =13958.100735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.187 3.813 6 C 0.161 3.839 7 O -0.356 6.356 8 C 0.052 3.948 9 C 0.524 3.476 10 O -0.516 6.516 11 N -0.619 5.619 12 C 0.098 3.902 13 C -0.128 4.128 14 C -0.117 4.117 15 H 0.075 0.925 16 C 0.162 3.838 17 N -0.602 5.602 18 C 0.163 3.837 19 C -0.254 4.254 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.908 5.908 23 Si 0.900 3.100 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.125 3.875 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.031 0.969 44 H 0.040 0.960 45 H -0.004 1.004 46 H 0.252 0.748 47 H 0.085 0.915 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 4.936 -26.110 27.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.185 4.185 4 N -0.188 5.188 5 C -0.019 4.019 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.028 4.028 9 C 0.310 3.690 10 O -0.390 6.390 11 N -0.356 5.356 12 C -0.025 4.025 13 C -0.167 4.167 14 C -0.140 4.140 15 H 0.094 0.906 16 C 0.034 3.966 17 N -0.324 5.324 18 C 0.018 3.982 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.195 4.195 22 N -0.553 5.553 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.005 3.995 28 O -0.080 6.080 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.015 0.985 46 H 0.062 0.938 47 H 0.104 0.896 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.330 5.573 -25.269 27.184 hybrid contribution -0.966 0.298 0.340 1.066 sum -9.296 5.871 -24.929 27.246 Atomic orbital electron populations 1.20321 0.83720 1.04581 1.04050 1.23587 0.95210 0.84518 1.05908 1.23115 0.87583 1.00570 1.07199 1.70413 1.23323 1.09051 1.16029 1.25506 0.83878 0.89938 1.02589 1.20470 0.89073 0.96393 0.85681 1.88094 1.45662 1.69835 1.23773 1.22249 0.89139 0.95661 0.95746 1.19661 0.80184 0.79125 0.90017 1.90784 1.48323 1.48174 1.51720 1.48640 1.27653 1.49731 1.09584 1.22071 0.91609 0.96020 0.92778 1.22673 0.97758 1.00078 0.96145 1.23212 0.98776 0.96769 0.95203 0.90630 1.20652 0.91444 0.99242 0.85284 1.43892 1.64078 1.03630 1.20786 1.20784 0.99760 0.83870 0.93775 1.19139 1.41229 0.88423 0.89575 0.91313 1.24994 1.00885 0.97264 0.96369 1.70059 1.49748 1.27130 1.08342 0.86405 0.79992 0.81913 0.78734 1.20872 1.21694 1.20901 1.22352 0.99824 0.96597 0.80753 1.84395 1.17713 1.36628 1.69298 0.90205 0.89007 0.89171 0.79676 0.88419 0.89914 0.89795 0.89900 0.91807 0.91736 0.90466 0.90347 0.93996 0.93186 0.95111 0.94166 0.98522 0.93781 0.89625 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.43 36.01 0.38 0.01 16 2 C -0.04 -0.38 7.39 -35.69 -0.26 -0.64 16 3 C -0.05 -0.48 11.80 -17.77 -0.21 -0.69 16 4 N -0.46 -6.07 11.29 -11.10 -0.13 -6.19 16 5 C 0.19 2.32 7.97 -12.95 -0.10 2.21 16 6 C 0.16 1.54 6.56 36.01 0.24 1.77 16 7 O -0.36 -4.88 9.86 -55.14 -0.54 -5.42 16 8 C 0.05 0.57 5.61 36.00 0.20 0.77 16 9 C 0.52 8.58 7.93 -10.99 -0.09 8.49 16 10 O -0.52 -11.36 16.75 -14.35 -0.24 -11.60 16 11 N -0.62 -9.29 3.33 -170.51 -0.57 -9.86 16 12 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 13 C -0.13 -1.42 6.42 -24.90 -0.16 -1.58 16 14 C -0.12 -1.87 3.29 -88.46 -0.29 -2.16 16 15 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.16 3.09 5.18 -4.04 -0.02 3.06 16 17 N -0.60 -14.71 2.87 -181.11 -0.52 -15.23 16 18 C 0.16 3.97 8.98 59.85 0.54 4.51 16 19 C -0.25 -6.93 8.98 -15.06 -0.14 -7.06 16 20 H 0.07 1.85 6.72 -52.49 -0.35 1.50 16 21 C 0.00 0.09 5.09 -17.43 -0.09 0.00 16 22 N -0.91 -26.76 10.71 55.49 0.59 -26.17 16 23 Si 0.90 22.77 29.57 -169.99 -5.03 17.74 16 24 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 27 C 0.13 2.28 5.07 -2.52 -0.01 2.26 16 28 O -0.19 -2.35 10.78 5.36 0.06 -2.29 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 42 H 0.05 0.96 8.00 -51.93 -0.42 0.54 16 43 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 44 H 0.04 1.06 7.33 -51.92 -0.38 0.68 16 45 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.09 1.89 8.03 -51.93 -0.42 1.47 16 48 H 0.07 1.34 7.43 -51.93 -0.39 0.95 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -37.77 398.62 -8.20 -45.97 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -7.80 Total: -4.89 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -0.04 Total: 11.95 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.62 Total: -57.46 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.73 Total: -19.31 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.77 -8.20 -45.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713753667.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.963 kcal (2) G-P(sol) polarization free energy of solvation -37.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds