Wall clock time and date at job start Tue Mar 31 2020 19:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34334 * 126.43930 * 2 1 4 4 N 1.34476 * 107.66859 * 179.73357 * 3 2 1 5 5 C 1.30255 * 108.70117 * 0.41635 * 4 3 2 6 6 C 1.50701 * 125.62149 * 179.84277 * 5 4 3 7 7 O 1.42903 * 109.47134 * 89.69879 * 6 5 4 8 8 C 1.42894 * 114.00032 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47320 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99655 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00222 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64654 * 359.96384 * 11 9 8 13 13 C 1.54326 * 107.27107 * 181.09553 * 12 11 9 14 14 C 1.55156 * 102.94345 * 22.18512 * 13 12 11 15 15 H 1.09006 * 111.00212 * 82.57400 * 14 13 12 16 16 C 1.52999 * 111.00659 * 206.42874 * 14 13 12 17 17 N 1.46499 * 109.47171 * 178.65178 * 16 14 13 18 18 C 1.46503 * 119.99840 * 89.99715 * 17 16 14 19 19 C 1.36938 * 119.99967 * 269.99881 * 17 16 14 20 20 H 1.07996 * 119.99677 * 22.74234 * 19 17 16 21 21 C 1.38818 * 119.99952 * 202.73951 * 19 17 16 22 22 N 1.31618 * 119.99735 * 13.37392 * 21 19 17 23 23 Si 1.86796 * 120.00020 * 193.37274 * 21 19 17 24 24 H 1.48500 * 109.47330 * 59.99945 * 23 21 19 25 25 H 1.48499 * 109.46932 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46702 * 299.99895 * 23 21 19 27 27 C 1.47423 * 125.64882 * 179.97438 * 11 9 8 28 28 O 1.33973 * 108.75913 * 359.58372 * 5 4 3 29 29 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47389 * 299.99546 * 1 2 3 31 31 H 1.09000 * 109.47855 * 60.00036 * 1 2 3 32 32 H 1.07999 * 126.16310 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47272 * 329.69251 * 6 5 4 34 34 H 1.09007 * 109.46941 * 209.69519 * 6 5 4 35 35 H 1.09005 * 109.47199 * 59.99448 * 8 7 6 36 36 H 1.09002 * 109.47026 * 299.99889 * 8 7 6 37 37 H 1.09008 * 109.87858 * 300.50625 * 12 11 9 38 38 H 1.08993 * 109.88713 * 61.52122 * 12 11 9 39 39 H 1.09004 * 110.71580 * 263.82986 * 13 12 11 40 40 H 1.08996 * 110.72366 * 140.55323 * 13 12 11 41 41 H 1.09003 * 109.47123 * 298.64857 * 16 14 13 42 42 H 1.08997 * 109.46805 * 58.64915 * 16 14 13 43 43 H 1.09001 * 109.47033 * 95.13276 * 18 17 16 44 44 H 1.09007 * 109.47001 * 215.12802 * 18 17 16 45 45 H 1.08998 * 109.47466 * 335.12710 * 18 17 16 46 46 H 0.97001 * 120.00107 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.36401 * 37.00748 * 27 11 9 48 48 H 1.08998 * 110.46638 * 274.72566 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6480 0.0060 5 6 3.5766 -0.6545 0.0006 6 6 4.8006 -1.5337 0.0010 7 8 5.1871 -1.8114 1.3485 8 6 6.3443 -2.6420 1.4618 9 6 6.6599 -2.8680 2.9179 10 8 5.9621 -2.3675 3.7743 11 7 7.7169 -3.6272 3.2684 12 6 8.6406 -4.2921 2.3376 13 6 9.6701 -5.0656 3.1881 14 6 8.9324 -5.2544 4.5400 15 1 8.2595 -6.1111 4.5015 16 6 9.9280 -5.3931 5.6934 17 7 9.1971 -5.5371 6.9548 18 6 8.8263 -6.8694 7.4385 19 6 8.8605 -4.4265 7.6817 20 1 8.7889 -3.4646 7.1960 21 6 8.6112 -4.5372 9.0428 22 7 8.9477 -5.6348 9.6864 23 14 7.7980 -3.1282 9.9610 24 1 6.4615 -2.8595 9.3722 25 1 7.6446 -3.4932 11.3922 26 1 8.6422 -1.9116 9.8486 27 6 8.1383 -3.9286 4.6486 28 8 2.3075 -1.0839 0.0003 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.9820 2.1113 -0.0004 33 1 5.6150 -1.0230 -0.5127 34 1 4.5765 -2.4687 -0.5127 35 1 7.1907 -2.1538 0.9784 36 1 6.1528 -3.5999 0.9782 37 1 8.0902 -4.9850 1.7010 38 1 9.1478 -3.5479 1.7237 39 1 10.5781 -4.4778 3.3232 40 1 9.8978 -6.0304 2.7350 41 1 10.5509 -6.2730 5.5319 42 1 10.5583 -4.5050 5.7380 43 1 9.5818 -7.2248 8.1392 44 1 7.8604 -6.8176 7.9411 45 1 8.7606 -7.5569 6.5953 46 1 8.7732 -5.7124 10.6374 47 1 7.2675 -4.0596 5.2910 48 1 8.7771 -3.1340 5.0342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713753667.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:50 Heat of formation + Delta-G solvation = -49.456348 kcal Electronic energy + Delta-G solvation = -28729.701827 eV Core-core repulsion = 24593.792027 eV Total energy + Delta-G solvation = -4135.909801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.42560 -41.17161 -39.37007 -38.40841 -37.07913 -35.87469 -34.01916 -33.72743 -32.40772 -30.76179 -30.04679 -28.81275 -27.87868 -26.79251 -26.04384 -24.31577 -23.41571 -22.81866 -22.20248 -21.05738 -20.46068 -18.84864 -18.72154 -18.23528 -17.83567 -17.57201 -17.30820 -16.87807 -16.62606 -16.27588 -15.84036 -15.51062 -15.38731 -15.12720 -14.88284 -14.59368 -14.36854 -14.26385 -13.91124 -13.88383 -13.75000 -13.33532 -13.17218 -13.11591 -13.06034 -13.02619 -12.86821 -12.62186 -12.48154 -12.35758 -12.14672 -11.94778 -11.89462 -11.67782 -11.54545 -11.43174 -10.93521 -10.92465 -10.62736 -9.79033 -9.66470 -8.74370 -7.83393 -5.29813 0.20383 1.31161 1.38910 1.42316 1.48818 1.52679 1.61595 1.83942 2.47750 2.76474 3.19954 3.29698 3.47919 3.67601 3.75162 3.80541 3.96465 3.99209 4.04715 4.11500 4.13732 4.18561 4.25672 4.40937 4.45224 4.55046 4.59549 4.65163 4.73995 4.77486 4.84466 4.92265 4.96264 4.98528 5.01888 5.12021 5.13612 5.23319 5.26280 5.29703 5.41920 5.54738 5.64547 5.74094 5.83297 6.33745 6.53765 6.59913 7.11401 7.16751 7.90485 8.31433 9.18830 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.002246 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.531977 B =12465.017599 C =13958.100735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.040 4.040 3 C -0.068 4.068 4 N -0.490 5.490 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.402 6.402 8 C 0.062 3.938 9 C 0.510 3.490 10 O -0.593 6.593 11 N -0.617 5.617 12 C 0.093 3.907 13 C -0.115 4.115 14 C -0.107 4.107 15 H 0.069 0.931 16 C 0.159 3.841 17 N -0.619 5.619 18 C 0.177 3.823 19 C -0.246 4.246 20 H 0.064 0.936 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.950 3.050 24 H -0.293 1.293 25 H -0.289 1.289 26 H -0.275 1.275 27 C 0.128 3.872 28 O -0.210 6.210 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.210 0.790 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.007 0.993 44 H 0.006 0.994 45 H 0.035 0.965 46 H 0.247 0.753 47 H 0.031 0.969 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 4.517 -30.194 31.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.207 4.207 4 N -0.221 5.221 5 C -0.042 4.042 6 C 0.084 3.916 7 O -0.321 6.321 8 C -0.016 4.016 9 C 0.299 3.701 10 O -0.473 6.473 11 N -0.352 5.352 12 C -0.028 4.028 13 C -0.153 4.153 14 C -0.129 4.129 15 H 0.088 0.912 16 C 0.033 3.967 17 N -0.342 5.342 18 C 0.031 3.969 19 C -0.377 4.377 20 H 0.082 0.918 21 C -0.247 4.247 22 N -0.583 5.583 23 Si 0.780 3.220 24 H -0.220 1.220 25 H -0.215 1.215 26 H -0.201 1.201 27 C 0.006 3.994 28 O -0.097 6.097 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.227 0.773 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.668 5.140 -29.437 30.851 hybrid contribution -1.180 0.454 1.523 1.979 sum -8.847 5.594 -27.915 29.813 Atomic orbital electron populations 1.20559 0.80633 1.05404 1.05876 1.24444 0.96887 0.83814 1.04135 1.23617 0.87073 1.02092 1.07879 1.70381 1.24882 1.09952 1.16931 1.26201 0.84763 0.90281 1.02910 1.20843 0.88734 0.97893 0.84162 1.88023 1.46858 1.70718 1.26526 1.22354 0.89921 0.97927 0.91410 1.20868 0.79269 0.77799 0.92148 1.90744 1.50962 1.51264 1.54298 1.48722 1.28090 1.49367 1.09017 1.22486 0.90941 0.97286 0.92087 1.22696 0.97628 1.02265 0.92722 1.22915 0.98035 0.94905 0.97037 0.91217 1.20893 0.92006 1.00119 0.83728 1.44144 1.64918 1.02780 1.22380 1.20525 0.97132 0.84715 0.94478 1.19349 1.39425 0.89214 0.89727 0.91804 1.25601 1.02483 0.99258 0.97395 1.70183 1.51508 1.28488 1.08083 0.85593 0.78630 0.80125 0.77670 1.22015 1.21474 1.20102 1.22013 0.97519 0.97483 0.82422 1.84399 1.18131 1.37660 1.69520 0.89856 0.87732 0.86571 0.77321 0.85972 0.86506 0.85771 0.85696 0.88355 0.88136 0.89596 0.86993 0.91612 0.93534 0.97498 0.97498 0.94640 0.94383 0.95062 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.43 71.24 0.74 0.15 16 2 C -0.04 -0.75 7.39 24.79 0.18 -0.57 16 3 C -0.07 -1.41 11.80 83.40 0.98 -0.43 16 4 N -0.49 -12.97 11.29 -303.82 -3.43 -16.40 16 5 C 0.16 3.99 7.97 88.34 0.70 4.69 16 6 C 0.16 2.69 6.56 71.24 0.47 3.16 16 7 O -0.40 -10.49 9.86 -129.94 -1.28 -11.77 16 8 C 0.06 1.16 5.61 71.23 0.40 1.56 16 9 C 0.51 16.39 7.93 87.66 0.69 17.08 16 10 O -0.59 -27.51 16.75 16.01 0.27 -27.24 16 11 N -0.62 -17.53 3.33 -811.76 -2.70 -20.23 16 12 C 0.09 1.42 6.49 86.73 0.56 1.99 16 13 C -0.11 -2.01 6.42 31.78 0.20 -1.80 16 14 C -0.11 -3.23 3.29 -9.40 -0.03 -3.26 16 15 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 16 C 0.16 5.85 5.18 86.38 0.45 6.30 16 17 N -0.62 -30.70 2.87 -726.92 -2.09 -32.79 16 18 C 0.18 8.73 8.98 127.77 1.15 9.88 16 19 C -0.25 -13.87 8.98 84.03 0.75 -13.12 16 20 H 0.06 3.59 6.72 -2.91 -0.02 3.57 16 21 C -0.05 -3.08 5.09 84.86 0.43 -2.64 16 22 N -0.94 -57.01 10.71 21.65 0.23 -56.78 16 23 Si 0.95 48.61 29.57 68.60 2.03 50.63 16 24 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 25 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 27 C 0.13 4.75 5.07 86.86 0.44 5.19 16 28 O -0.21 -5.02 10.78 -3.72 -0.04 -5.06 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 42 H 0.05 1.74 8.00 -2.39 -0.02 1.72 16 43 H 0.01 0.36 7.34 -2.39 -0.02 0.35 16 44 H 0.01 0.35 7.33 -2.38 -0.02 0.33 16 45 H 0.04 1.44 8.03 -2.39 -0.02 1.42 16 46 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.03 1.47 8.03 -2.39 -0.02 1.45 16 48 H 0.05 1.96 7.43 -2.39 -0.02 1.94 16 Total: -1.00 -91.83 398.62 2.07 -89.76 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 0.94 Total: 1.68 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: 8.13 Total: 28.18 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -7.99 Total: -126.20 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.05 Total: -44.06 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.03 Total: 50.63 kcal Total: -91.83 2.07 -89.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713753667.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.308 kcal (2) G-P(sol) polarization free energy of solvation -91.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds