Wall clock time and date at job start Tue Mar 31 2020 19:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34330 * 126.44551 * 2 1 4 4 N 1.34484 * 107.66653 * 179.72463 * 3 2 1 5 5 C 1.30254 * 108.70386 * 0.42375 * 4 3 2 6 6 C 1.50698 * 125.62222 * 179.84038 * 5 4 3 7 7 O 1.42899 * 109.47340 * 89.69374 * 6 5 4 8 8 C 1.42895 * 113.99990 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46874 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00243 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99801 * 180.27220 * 9 8 7 12 12 C 1.46496 * 119.99892 * 179.72375 * 11 9 8 13 13 C 1.53006 * 109.47134 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.49763 * 304.94304 * 13 12 11 15 15 C 1.53036 * 109.49654 * 184.84108 * 13 12 11 16 16 C 1.53045 * 109.53715 * 178.68435 * 15 13 12 17 17 C 1.53193 * 109.31038 * 61.36645 * 16 15 13 18 18 N 1.46928 * 108.77528 * 305.36532 * 17 16 15 19 19 C 1.36945 * 120.62973 * 233.63452 * 18 17 16 20 20 H 1.07998 * 119.99807 * 151.81266 * 19 18 17 21 21 C 1.38808 * 119.99735 * 331.80554 * 19 18 17 22 22 N 1.31616 * 120.00067 * 343.08601 * 21 19 18 23 23 Si 1.86800 * 119.99767 * 163.08776 * 21 19 18 24 24 H 1.48500 * 109.47224 * 90.00113 * 23 21 19 25 25 H 1.48499 * 109.47090 * 209.99850 * 23 21 19 26 26 H 1.48497 * 109.47212 * 329.99935 * 23 21 19 27 27 C 1.46923 * 118.74203 * 53.60797 * 18 17 16 28 28 O 1.33977 * 108.75594 * 359.57294 * 5 4 3 29 29 H 1.08994 * 109.47523 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47414 * 300.00398 * 1 2 3 31 31 H 1.09010 * 109.46888 * 59.99493 * 1 2 3 32 32 H 1.07994 * 126.16903 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47167 * 329.69182 * 6 5 4 34 34 H 1.09006 * 109.47198 * 209.69085 * 6 5 4 35 35 H 1.09006 * 109.47031 * 60.00238 * 8 7 6 36 36 H 1.08996 * 109.47349 * 299.99815 * 8 7 6 37 37 H 0.97005 * 119.99653 * 359.72990 * 11 9 8 38 38 H 1.09001 * 109.47838 * 300.00625 * 12 11 9 39 39 H 1.09000 * 109.46991 * 60.00812 * 12 11 9 40 40 H 1.08996 * 109.46120 * 298.70514 * 15 13 12 41 41 H 1.09003 * 109.46153 * 58.66602 * 15 13 12 42 42 H 1.08999 * 109.49284 * 301.41550 * 16 15 13 43 43 H 1.08997 * 109.50113 * 181.31740 * 16 15 13 44 44 H 1.09003 * 109.58368 * 185.58296 * 17 16 15 45 45 H 1.08996 * 109.70651 * 65.22157 * 17 16 15 46 46 H 0.97002 * 119.99756 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.59289 * 186.60483 * 27 18 17 48 48 H 1.09006 * 109.69963 * 66.24713 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5765 -0.6549 0.0007 6 6 4.8004 -1.5342 0.0013 7 8 5.1868 -1.8119 1.3488 8 6 6.3439 -2.6425 1.4621 9 6 6.6594 -2.8685 2.9183 10 8 5.9616 -2.3679 3.7747 11 7 7.7198 -3.6229 3.2689 12 6 8.0300 -3.8376 4.6845 13 6 9.2726 -4.7220 4.8059 14 1 9.1163 -5.6472 4.2511 15 6 9.5269 -5.0461 6.2798 16 6 10.7504 -5.9576 6.3997 17 6 11.9798 -5.2309 5.8454 18 7 11.6893 -4.7879 4.4749 19 6 12.5247 -5.1210 3.4422 20 1 12.1337 -5.2134 2.4397 21 6 13.8740 -5.3396 3.6838 22 7 14.4192 -4.9148 4.8039 23 14 14.9159 -6.2367 2.4193 24 1 15.4996 -5.2537 1.4716 25 1 16.0087 -6.9691 3.1082 26 1 14.0678 -7.2005 1.6730 27 6 10.4853 -3.9813 4.2334 28 8 2.3073 -1.0840 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5140 -0.8900 32 1 1.9823 2.1112 -0.0004 33 1 5.6149 -1.0235 -0.5123 34 1 4.5763 -2.4691 -0.5124 35 1 7.1904 -2.1544 0.9789 36 1 6.1524 -3.6004 0.9786 37 1 8.2777 -4.0235 2.5839 38 1 8.2194 -2.8776 5.1647 39 1 7.1864 -4.3271 5.1711 40 1 9.7073 -4.1220 6.8289 41 1 8.6554 -5.5515 6.6961 42 1 10.5805 -6.8714 5.8303 43 1 10.9170 -6.2070 7.4476 44 1 12.8326 -5.9098 5.8369 45 1 12.2074 -4.3660 6.4684 46 1 15.3620 -5.0679 4.9729 47 1 10.3519 -3.8356 3.1615 48 1 10.5870 -3.0132 4.7239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714038132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:48 Heat of formation + Delta-G solvation = -40.748845 kcal Electronic energy + Delta-G solvation = -28256.912252 eV Core-core repulsion = 24121.380036 eV Total energy + Delta-G solvation = -4135.532215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.67039 -39.86782 -38.23359 -37.54112 -35.07380 -34.82007 -33.15723 -33.03196 -30.81685 -30.46194 -29.84818 -27.82510 -25.61754 -25.33544 -24.79555 -22.66981 -22.15292 -21.46334 -21.05190 -20.54143 -19.10713 -17.88316 -17.58245 -17.00427 -16.72160 -16.58654 -16.44692 -15.47527 -15.19577 -15.04103 -14.84988 -14.65159 -14.16091 -13.86216 -13.72553 -13.57004 -13.45154 -13.38605 -12.87420 -12.80768 -12.68520 -12.38237 -12.28419 -12.20040 -12.07706 -11.64617 -11.31466 -11.04731 -10.86911 -10.73229 -10.53024 -10.27092 -10.22287 -10.20573 -9.98580 -9.85910 -9.57490 -9.44749 -9.09151 -8.97315 -8.49713 -6.70139 -5.82353 -3.25531 0.95052 2.04708 2.32083 2.60390 2.86484 3.33805 3.41316 3.42640 3.53520 4.05824 4.32390 4.44697 4.53377 4.59168 4.65238 4.75756 4.84423 4.90894 4.92638 5.01903 5.08256 5.13647 5.27575 5.41396 5.44037 5.46922 5.59460 5.66977 5.81008 5.91909 5.92787 5.97340 6.21090 6.29927 6.35151 6.42038 6.51796 6.57201 6.68036 6.74914 6.83607 6.93789 7.36988 7.37443 7.52202 7.64905 7.74893 8.22860 8.41184 9.17323 9.80957 10.37948 11.25913 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.001799 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.125396 B =15560.385228 C =16579.881265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.040 4.040 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.357 6.357 8 C 0.044 3.956 9 C 0.512 3.488 10 O -0.525 6.525 11 N -0.721 5.721 12 C 0.129 3.871 13 C -0.117 4.117 14 H 0.073 0.927 15 C -0.100 4.100 16 C -0.141 4.141 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.154 3.846 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.404 0.596 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.050 0.950 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.680 5.001 -9.755 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.019 4.019 6 C 0.083 3.917 7 O -0.275 6.275 8 C -0.035 4.035 9 C 0.297 3.703 10 O -0.400 6.400 11 N -0.375 5.375 12 C 0.006 3.994 13 C -0.138 4.138 14 H 0.092 0.908 15 C -0.138 4.138 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.314 5.314 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.027 3.973 28 O -0.081 6.081 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.239 0.761 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -23.540 5.720 -8.901 25.808 hybrid contribution 0.430 -1.021 -1.097 1.559 sum -23.110 4.699 -9.999 25.615 Atomic orbital electron populations 1.20316 0.83738 1.04543 1.04048 1.23579 0.95196 0.84535 1.06033 1.23121 0.87588 1.00572 1.07133 1.70427 1.23300 1.09061 1.15991 1.25526 0.83857 0.89949 1.02527 1.20491 0.89106 0.96472 0.85611 1.88066 1.45636 1.69875 1.23875 1.22293 0.89527 0.96037 0.95688 1.20067 0.81023 0.79097 0.90155 1.90738 1.49175 1.48343 1.51726 1.45937 1.29596 1.52241 1.09692 1.21482 0.97378 1.00284 0.80302 1.21961 0.94615 0.98977 0.98257 0.90818 1.21342 0.97952 0.99827 0.94686 1.22169 0.97462 0.98898 0.99540 1.20795 0.94041 0.96624 0.84227 1.44029 1.24002 1.58424 1.04899 1.19132 0.88371 1.41660 0.89294 0.91785 1.25048 0.96480 1.00598 0.97441 1.70035 1.11592 1.47135 1.25716 0.86323 0.80047 0.79705 0.80821 1.21405 1.21554 1.20512 1.20898 0.86376 0.92487 0.97564 1.84395 1.17729 1.36623 1.69344 0.90229 0.89043 0.89170 0.79685 0.88254 0.89836 0.89287 0.89614 0.76109 0.91451 0.91885 0.92437 0.93421 0.92745 0.93170 0.89606 0.96415 0.93599 0.93161 0.96321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.00 0.38 0.07 16 2 C -0.04 -0.36 7.39 -35.69 -0.26 -0.62 16 3 C -0.04 -0.44 11.80 -17.77 -0.21 -0.65 16 4 N -0.46 -5.80 11.29 -11.10 -0.13 -5.92 16 5 C 0.19 2.19 7.97 -12.95 -0.10 2.09 16 6 C 0.16 1.43 6.56 36.00 0.24 1.67 16 7 O -0.36 -4.44 9.86 -55.14 -0.54 -4.98 16 8 C 0.04 0.43 6.42 36.01 0.23 0.66 16 9 C 0.51 7.04 7.91 -10.98 -0.09 6.95 16 10 O -0.52 -9.73 16.50 -14.35 -0.24 -9.97 16 11 N -0.72 -9.02 5.33 -60.29 -0.32 -9.34 16 12 C 0.13 1.83 5.07 -4.04 -0.02 1.81 16 13 C -0.12 -1.86 2.38 -90.50 -0.21 -2.07 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.10 -1.61 5.17 -26.69 -0.14 -1.74 16 16 C -0.14 -2.60 6.08 -26.61 -0.16 -2.77 16 17 C 0.17 3.92 5.30 -3.71 -0.02 3.90 16 18 N -0.59 -14.16 2.99 -172.32 -0.52 -14.68 16 19 C -0.25 -6.71 9.58 -15.06 -0.14 -6.86 16 20 H 0.06 1.63 7.88 -52.49 -0.41 1.21 16 21 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 22 N -0.90 -25.67 11.20 55.49 0.62 -25.05 16 23 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.15 2.98 5.60 -3.71 -0.02 2.96 16 28 O -0.19 -2.19 10.78 5.34 0.06 -2.14 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 4.21 7.70 -40.82 -0.31 3.90 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.05 0.92 7.13 -51.93 -0.37 0.55 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -36.06 396.84 -8.47 -44.54 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.74 Total: 0.13 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.63 Total: 5.40 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.34 Total: -54.99 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.72 Total: -17.08 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.06 -8.47 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714038132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.787 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds