Wall clock time and date at job start Tue Mar 31 2020 19:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34330 * 126.44551 * 2 1 4 4 N 1.34484 * 107.66653 * 179.72463 * 3 2 1 5 5 C 1.30254 * 108.70386 * 0.42375 * 4 3 2 6 6 C 1.50698 * 125.62222 * 179.84038 * 5 4 3 7 7 O 1.42899 * 109.47340 * 89.69374 * 6 5 4 8 8 C 1.42895 * 113.99990 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46874 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00243 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99801 * 180.27220 * 9 8 7 12 12 C 1.46496 * 119.99892 * 179.72375 * 11 9 8 13 13 C 1.53006 * 109.47134 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.49763 * 304.94304 * 13 12 11 15 15 C 1.53036 * 109.49654 * 184.84108 * 13 12 11 16 16 C 1.53045 * 109.53715 * 178.68435 * 15 13 12 17 17 C 1.53193 * 109.31038 * 61.36645 * 16 15 13 18 18 N 1.46928 * 108.77528 * 305.36532 * 17 16 15 19 19 C 1.36945 * 120.62973 * 233.63452 * 18 17 16 20 20 H 1.07998 * 119.99807 * 151.81266 * 19 18 17 21 21 C 1.38808 * 119.99735 * 331.80554 * 19 18 17 22 22 N 1.31616 * 120.00067 * 343.08601 * 21 19 18 23 23 Si 1.86800 * 119.99767 * 163.08776 * 21 19 18 24 24 H 1.48500 * 109.47224 * 90.00113 * 23 21 19 25 25 H 1.48499 * 109.47090 * 209.99850 * 23 21 19 26 26 H 1.48497 * 109.47212 * 329.99935 * 23 21 19 27 27 C 1.46923 * 118.74203 * 53.60797 * 18 17 16 28 28 O 1.33977 * 108.75594 * 359.57294 * 5 4 3 29 29 H 1.08994 * 109.47523 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47414 * 300.00398 * 1 2 3 31 31 H 1.09010 * 109.46888 * 59.99493 * 1 2 3 32 32 H 1.07994 * 126.16903 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47167 * 329.69182 * 6 5 4 34 34 H 1.09006 * 109.47198 * 209.69085 * 6 5 4 35 35 H 1.09006 * 109.47031 * 60.00238 * 8 7 6 36 36 H 1.08996 * 109.47349 * 299.99815 * 8 7 6 37 37 H 0.97005 * 119.99653 * 359.72990 * 11 9 8 38 38 H 1.09001 * 109.47838 * 300.00625 * 12 11 9 39 39 H 1.09000 * 109.46991 * 60.00812 * 12 11 9 40 40 H 1.08996 * 109.46120 * 298.70514 * 15 13 12 41 41 H 1.09003 * 109.46153 * 58.66602 * 15 13 12 42 42 H 1.08999 * 109.49284 * 301.41550 * 16 15 13 43 43 H 1.08997 * 109.50113 * 181.31740 * 16 15 13 44 44 H 1.09003 * 109.58368 * 185.58296 * 17 16 15 45 45 H 1.08996 * 109.70651 * 65.22157 * 17 16 15 46 46 H 0.97002 * 119.99756 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.59289 * 186.60483 * 27 18 17 48 48 H 1.09006 * 109.69963 * 66.24713 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5765 -0.6549 0.0007 6 6 4.8004 -1.5342 0.0013 7 8 5.1868 -1.8119 1.3488 8 6 6.3439 -2.6425 1.4621 9 6 6.6594 -2.8685 2.9183 10 8 5.9616 -2.3679 3.7747 11 7 7.7198 -3.6229 3.2689 12 6 8.0300 -3.8376 4.6845 13 6 9.2726 -4.7220 4.8059 14 1 9.1163 -5.6472 4.2511 15 6 9.5269 -5.0461 6.2798 16 6 10.7504 -5.9576 6.3997 17 6 11.9798 -5.2309 5.8454 18 7 11.6893 -4.7879 4.4749 19 6 12.5247 -5.1210 3.4422 20 1 12.1337 -5.2134 2.4397 21 6 13.8740 -5.3396 3.6838 22 7 14.4192 -4.9148 4.8039 23 14 14.9159 -6.2367 2.4193 24 1 15.4996 -5.2537 1.4716 25 1 16.0087 -6.9691 3.1082 26 1 14.0678 -7.2005 1.6730 27 6 10.4853 -3.9813 4.2334 28 8 2.3073 -1.0840 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5140 -0.8900 32 1 1.9823 2.1112 -0.0004 33 1 5.6149 -1.0235 -0.5123 34 1 4.5763 -2.4691 -0.5124 35 1 7.1904 -2.1544 0.9789 36 1 6.1524 -3.6004 0.9786 37 1 8.2777 -4.0235 2.5839 38 1 8.2194 -2.8776 5.1647 39 1 7.1864 -4.3271 5.1711 40 1 9.7073 -4.1220 6.8289 41 1 8.6554 -5.5515 6.6961 42 1 10.5805 -6.8714 5.8303 43 1 10.9170 -6.2070 7.4476 44 1 12.8326 -5.9098 5.8369 45 1 12.2074 -4.3660 6.4684 46 1 15.3620 -5.0679 4.9729 47 1 10.3519 -3.8356 3.1615 48 1 10.5870 -3.0132 4.7239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714038132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:47 Heat of formation + Delta-G solvation = -67.558364 kcal Electronic energy + Delta-G solvation = -28258.074800 eV Core-core repulsion = 24121.380036 eV Total energy + Delta-G solvation = -4136.694763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.40319 -40.93492 -39.47237 -38.64876 -36.23474 -35.85090 -34.67350 -33.72522 -32.29799 -32.14155 -30.61485 -28.71090 -27.21843 -26.42110 -25.86661 -23.81107 -23.39144 -22.55965 -22.18635 -21.65104 -20.60289 -18.80230 -18.58684 -18.30803 -17.75601 -17.43204 -17.34130 -16.78753 -16.47537 -16.24079 -15.84182 -15.69389 -15.50141 -15.14131 -14.96432 -14.65641 -14.48664 -14.17092 -13.99597 -13.87916 -13.74293 -13.69676 -13.29835 -13.13572 -13.00419 -12.98302 -12.85520 -12.47776 -12.46021 -12.25403 -11.96492 -11.80601 -11.64812 -11.56246 -11.33587 -11.08557 -10.90456 -10.86012 -10.50994 -10.09141 -9.76718 -8.65243 -7.84487 -5.30356 0.22964 1.34850 1.48731 1.50772 1.58032 1.59746 1.63280 1.98884 2.53287 2.83219 3.30864 3.32216 3.61165 3.73975 3.78571 4.00298 4.01063 4.02623 4.07327 4.09754 4.20183 4.25321 4.31622 4.42261 4.47360 4.59270 4.61993 4.63077 4.67748 4.78345 4.89669 4.92362 4.98850 5.02408 5.12517 5.14281 5.24406 5.25592 5.34785 5.39215 5.48183 5.59331 5.69045 5.80234 5.82807 6.41310 6.55205 6.62551 7.17219 7.22469 7.88827 8.41236 9.21943 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.001799 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.125396 B =15560.385228 C =16579.881265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.492 5.492 5 C 0.166 3.834 6 C 0.159 3.841 7 O -0.397 6.397 8 C 0.047 3.953 9 C 0.508 3.492 10 O -0.581 6.581 11 N -0.712 5.712 12 C 0.138 3.862 13 C -0.098 4.098 14 H 0.082 0.918 15 C -0.099 4.099 16 C -0.129 4.129 17 C 0.173 3.827 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.075 0.925 21 C -0.054 4.054 22 N -0.938 5.938 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.151 3.849 28 O -0.209 6.209 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.209 0.791 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.417 0.583 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.051 0.949 45 H -0.010 1.010 46 H 0.248 0.752 47 H 0.062 0.938 48 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.747 4.016 -11.580 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 C -0.207 4.207 4 N -0.223 5.223 5 C -0.040 4.040 6 C 0.083 3.917 7 O -0.315 6.315 8 C -0.031 4.031 9 C 0.295 3.705 10 O -0.460 6.460 11 N -0.366 5.366 12 C 0.014 3.986 13 C -0.119 4.119 14 H 0.100 0.900 15 C -0.137 4.137 16 C -0.168 4.168 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.092 0.908 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.795 3.205 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.191 1.191 27 C 0.026 3.974 28 O -0.096 6.096 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.226 0.774 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.254 0.746 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.008 0.992 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -25.625 4.719 -10.767 28.193 hybrid contribution 1.016 -0.634 -0.520 1.306 sum -24.609 4.085 -11.287 27.380 Atomic orbital electron populations 1.20560 0.80562 1.05441 1.05878 1.24443 0.96879 0.83779 1.04090 1.23613 0.87041 1.02109 1.07919 1.70393 1.24959 1.09999 1.16941 1.26141 0.84731 0.90225 1.02936 1.20805 0.88677 0.97821 0.84431 1.87997 1.46695 1.70718 1.26109 1.22432 0.89915 0.98057 0.92707 1.20859 0.80126 0.77835 0.91702 1.90714 1.51058 1.50573 1.53664 1.45843 1.29521 1.51886 1.09301 1.21252 0.96642 0.99173 0.81513 1.21711 0.93311 0.98893 0.97972 0.89994 1.21347 0.97922 0.99421 0.94988 1.21993 0.96028 0.98618 1.00208 1.20622 0.95294 0.95231 0.84169 1.44305 1.24936 1.59348 1.04587 1.19565 0.88789 1.40333 0.90261 0.90780 1.25828 0.97855 1.01911 0.99339 1.70205 1.11403 1.48985 1.27809 0.85295 0.78230 0.78529 0.78488 1.21309 1.22415 1.19073 1.21044 0.86160 0.91696 0.98551 1.84400 1.18037 1.37605 1.69522 0.89772 0.87536 0.86788 0.77386 0.86517 0.86630 0.86505 0.85655 0.74609 0.92909 0.91127 0.92932 0.90237 0.92592 0.91435 0.93072 0.99174 0.94310 0.91908 0.97929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.23 0.74 0.29 16 2 C -0.04 -0.66 7.39 24.79 0.18 -0.48 16 3 C -0.07 -1.32 11.80 83.39 0.98 -0.33 16 4 N -0.49 -12.48 11.29 -303.82 -3.43 -15.91 16 5 C 0.17 3.81 7.97 88.34 0.70 4.51 16 6 C 0.16 2.57 6.56 71.24 0.47 3.04 16 7 O -0.40 -9.32 9.86 -129.94 -1.28 -10.60 16 8 C 0.05 0.79 6.42 71.24 0.46 1.24 16 9 C 0.51 13.16 7.91 87.66 0.69 13.85 16 10 O -0.58 -21.47 16.50 16.02 0.26 -21.20 16 11 N -0.71 -16.23 5.33 -463.05 -2.47 -18.70 16 12 C 0.14 3.69 5.07 86.38 0.44 4.13 16 13 C -0.10 -2.91 2.38 -10.71 -0.03 -2.94 16 14 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 16 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 17 C 0.17 8.18 5.30 86.36 0.46 8.63 16 18 N -0.61 -29.18 2.99 -699.09 -2.09 -31.27 16 19 C -0.26 -13.58 9.58 84.03 0.81 -12.78 16 20 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 21 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 22 N -0.94 -55.07 11.20 21.65 0.24 -54.83 16 23 Si 0.97 43.53 29.59 68.60 2.03 45.56 16 24 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.15 5.74 5.60 86.36 0.48 6.22 16 28 O -0.21 -4.60 10.78 -3.80 -0.04 -4.64 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.11 0.24 8.14 -2.38 -0.02 0.23 16 32 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.42 7.41 7.70 -92.70 -0.71 6.70 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 2.76 6.06 -2.39 -0.01 2.75 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 47 H 0.06 2.18 7.13 -2.39 -0.02 2.17 16 48 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 Total: -1.00 -82.19 396.84 0.62 -81.57 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.25 Total: 14.42 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 7.15 Total: 15.60 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -7.75 Total: -120.71 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.06 Total: -36.44 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -82.19 0.62 -81.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714038132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.009 kcal (2) G-P(sol) polarization free energy of solvation -82.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds