Wall clock time and date at job start Tue Mar 31 2020 19:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34334 * 126.44375 * 2 1 4 4 N 1.34475 * 107.67108 * 180.02562 * 3 2 1 5 5 C 1.30255 * 108.69826 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.61716 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46875 * 90.02409 * 6 5 4 8 8 C 1.42899 * 113.99607 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46876 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46923 * 120.63273 * 0.28271 * 11 9 8 13 13 C 1.53188 * 108.78248 * 126.36632 * 12 11 9 14 14 C 1.53041 * 109.31323 * 54.63155 * 13 12 11 15 15 C 1.53042 * 109.53960 * 298.64003 * 14 13 12 16 16 H 1.09003 * 109.49689 * 301.41711 * 15 14 13 17 17 C 1.52994 * 109.50004 * 181.34864 * 15 14 13 18 18 N 1.46498 * 109.47522 * 175.00155 * 17 15 14 19 19 C 1.36935 * 120.00098 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00022 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99616 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00445 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99468 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47044 * 90.00420 * 23 21 19 25 25 H 1.48506 * 109.46663 * 209.99391 * 23 21 19 26 26 H 1.48490 * 109.47303 * 329.99854 * 23 21 19 27 27 C 1.46929 * 120.63092 * 179.97438 * 11 9 8 28 28 O 1.33965 * 108.76353 * 0.22588 * 5 4 3 29 29 H 1.09002 * 109.47039 * 90.00539 * 1 2 3 30 30 H 1.09000 * 109.47106 * 209.99970 * 1 2 3 31 31 H 1.08995 * 109.47511 * 329.99951 * 1 2 3 32 32 H 1.08003 * 126.16477 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.47255 * 330.02536 * 6 5 4 34 34 H 1.09001 * 109.46743 * 210.02180 * 6 5 4 35 35 H 1.09004 * 109.47206 * 60.00168 * 8 7 6 36 36 H 1.08994 * 109.47548 * 299.99825 * 8 7 6 37 37 H 1.09001 * 109.58890 * 246.15338 * 12 11 9 38 38 H 1.09008 * 109.58793 * 6.43010 * 12 11 9 39 39 H 1.08997 * 109.49933 * 174.58934 * 13 12 11 40 40 H 1.09004 * 109.49155 * 294.68607 * 13 12 11 41 41 H 1.09004 * 109.45546 * 58.65884 * 14 13 12 42 42 H 1.09004 * 109.46076 * 178.63179 * 14 13 12 43 43 H 1.09002 * 109.46830 * 294.99897 * 17 15 14 44 44 H 1.08999 * 109.47072 * 54.99755 * 17 15 14 45 45 H 0.97002 * 119.99492 * 359.97438 * 18 17 15 46 46 H 0.97001 * 120.00229 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.58730 * 353.42298 * 27 11 9 48 48 H 1.09003 * 109.58586 * 113.84896 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 -0.0006 5 6 3.5765 -0.6547 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 8 5.1879 -1.8132 1.3440 8 6 6.3445 -2.6449 1.4554 9 6 6.6611 -2.8725 2.9111 10 8 5.9645 -2.3722 3.7687 11 7 7.7148 -3.6371 3.2600 12 6 8.5676 -4.2502 2.2328 13 6 10.0246 -3.8646 2.5068 14 6 10.3899 -4.2536 3.9412 15 6 9.4958 -3.4913 4.9218 16 1 9.6225 -2.4191 4.7715 17 6 9.8843 -3.8554 6.3561 18 7 9.1109 -3.0379 7.2940 19 6 9.2898 -3.1895 8.6432 20 1 10.0008 -3.9120 9.0157 21 6 8.5574 -2.4144 9.5318 22 7 7.6913 -1.5335 9.0778 23 14 8.8009 -2.6219 11.3723 24 1 9.8696 -1.7013 11.8370 25 1 7.5334 -2.3049 12.0781 26 1 9.1934 -4.0238 11.6648 27 6 8.0364 -3.8677 4.6750 28 8 2.3075 -1.0839 -0.0065 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9821 2.1113 -0.0004 33 1 5.6146 -1.0226 -0.5165 34 1 4.5760 -2.4682 -0.5176 35 1 7.1909 -2.1569 0.9719 36 1 6.1518 -3.6021 0.9712 37 1 8.4633 -5.3346 2.2708 38 1 8.2708 -3.8890 1.2480 39 1 10.6773 -4.3902 1.8098 40 1 10.1463 -2.7889 2.3794 41 1 10.2443 -5.3256 4.0749 42 1 11.4335 -4.0024 4.1310 43 1 9.6727 -4.9099 6.5332 44 1 10.9481 -3.6686 6.5029 45 1 8.4721 -2.3891 6.9593 46 1 7.1797 -0.9917 9.6988 47 1 7.3908 -3.2522 5.3016 48 1 7.8878 -4.9202 4.9166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714070877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:09 Heat of formation + Delta-G solvation = -40.856435 kcal Electronic energy + Delta-G solvation = -28736.880280 eV Core-core repulsion = 24601.343399 eV Total energy + Delta-G solvation = -4135.536881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.59879 -40.22661 -38.37350 -37.19924 -35.00085 -34.92105 -33.09997 -32.90354 -31.70427 -30.28907 -29.61758 -27.90069 -25.57481 -25.47631 -24.67476 -23.12295 -22.60573 -21.44345 -21.36869 -20.24330 -19.06754 -17.92694 -17.39666 -17.08125 -16.82539 -16.53974 -16.40347 -15.55173 -15.09696 -15.01526 -14.69804 -14.65264 -14.40586 -13.95925 -13.73793 -13.52323 -13.48298 -13.32452 -13.13219 -12.92174 -12.76005 -12.61504 -12.40446 -12.23231 -12.16619 -11.57371 -11.51178 -11.10753 -10.99727 -10.81254 -10.80128 -10.63872 -10.38048 -10.27650 -10.18573 -9.95498 -9.62793 -9.52920 -9.01978 -8.81484 -8.51162 -6.84642 -5.66776 -2.96961 1.02047 2.11714 2.38366 2.68378 2.82221 3.49181 3.51364 3.53439 3.56226 3.96714 4.37205 4.44712 4.58680 4.62680 4.66251 4.68503 4.75539 4.80470 4.82421 4.93234 4.97027 4.99155 5.08468 5.21024 5.21354 5.31452 5.37653 5.53617 5.64974 5.65821 5.73971 5.79247 5.83022 5.95160 5.99130 6.09777 6.13771 6.22897 6.40551 6.47238 6.56694 6.71270 6.80076 6.90518 7.43982 7.46399 7.76839 8.29069 8.50595 9.61469 10.19580 10.53581 11.55404 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.002331 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.717503 B =12008.631481 C =14189.381920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.044 4.044 4 N -0.457 5.457 5 C 0.187 3.813 6 C 0.162 3.838 7 O -0.355 6.355 8 C 0.048 3.952 9 C 0.510 3.490 10 O -0.505 6.505 11 N -0.611 5.611 12 C 0.105 3.895 13 C -0.134 4.134 14 C -0.112 4.112 15 C -0.108 4.108 16 H 0.074 0.926 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.122 3.878 28 O -0.195 6.195 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.104 0.896 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -3.452 -27.853 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.183 4.183 4 N -0.187 5.187 5 C -0.019 4.019 6 C 0.084 3.916 7 O -0.272 6.272 8 C -0.031 4.031 9 C 0.296 3.704 10 O -0.378 6.378 11 N -0.347 5.347 12 C -0.018 4.018 13 C -0.173 4.173 14 C -0.150 4.150 15 C -0.128 4.128 16 H 0.092 0.908 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.001 3.999 28 O -0.081 6.081 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.203 0.797 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.122 0.878 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.171 -2.867 -27.052 27.895 hybrid contribution -0.482 -0.264 0.728 0.913 sum -6.654 -3.130 -26.324 27.331 Atomic orbital electron populations 1.20312 0.83722 1.04778 1.03799 1.23581 0.95197 0.84518 1.05962 1.23139 0.87567 1.00561 1.07074 1.70415 1.23334 1.09033 1.15959 1.25488 0.83871 0.89948 1.02638 1.20465 0.89103 0.96338 0.85680 1.88117 1.45600 1.69724 1.23778 1.22317 0.89256 0.95593 0.95969 1.20052 0.81103 0.79154 0.90136 1.90827 1.48177 1.47472 1.51314 1.48110 1.28249 1.50240 1.08105 1.21766 0.90865 0.98322 0.90819 1.21920 0.95302 1.02137 0.97910 1.21521 0.99798 1.00281 0.93440 1.21618 0.94087 1.00793 0.96280 0.90759 1.20626 0.94899 0.94581 0.86612 1.42422 1.47795 1.45331 1.02260 1.19194 1.18490 1.17095 0.82617 0.91230 1.24773 0.99206 0.99037 0.97943 1.69676 1.28232 1.26351 1.33413 0.86205 0.76902 0.77437 0.85710 1.21784 1.21792 1.20811 1.21644 0.96823 1.01798 0.79654 1.84379 1.17699 1.36638 1.69394 0.89696 0.90085 0.88698 0.79667 0.88431 0.89968 0.89740 0.89921 0.91079 0.90402 0.90795 0.91403 0.91710 0.91446 0.96261 0.96056 0.78061 0.93455 0.87777 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.43 36.00 0.38 0.00 16 2 C -0.04 -0.39 7.39 -35.69 -0.26 -0.66 16 3 C -0.04 -0.48 11.80 -17.77 -0.21 -0.69 16 4 N -0.46 -6.23 11.29 -11.10 -0.13 -6.35 16 5 C 0.19 2.35 7.97 -12.94 -0.10 2.25 16 6 C 0.16 1.53 6.56 36.01 0.24 1.77 16 7 O -0.35 -4.84 9.86 -55.14 -0.54 -5.39 16 8 C 0.05 0.51 4.76 36.01 0.17 0.68 16 9 C 0.51 8.02 7.78 -10.98 -0.09 7.94 16 10 O -0.50 -11.05 15.91 -14.35 -0.23 -11.28 16 11 N -0.61 -8.39 2.98 -173.05 -0.52 -8.90 16 12 C 0.11 0.92 6.34 -3.71 -0.02 0.90 16 13 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 14 C -0.11 -1.31 5.17 -26.69 -0.14 -1.45 16 15 C -0.11 -1.76 2.36 -90.74 -0.21 -1.97 16 16 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 17 C 0.16 3.26 5.66 -4.05 -0.02 3.24 16 18 N -0.73 -19.27 5.38 -59.91 -0.32 -19.60 16 19 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.59 13.06 55.49 0.72 -28.87 16 23 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.12 2.07 5.49 -3.95 -0.02 2.05 16 28 O -0.19 -2.38 10.78 5.37 0.06 -2.32 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 36 H 0.08 0.57 7.94 -51.93 -0.41 0.16 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.45 5.94 -51.92 -0.31 0.14 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.39 10.90 6.89 -40.82 -0.28 10.62 16 46 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 47 H 0.10 2.26 6.20 -51.93 -0.32 1.94 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -39.99 396.26 -8.32 -48.31 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.61 Total: 5.24 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.71 Total: 5.01 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.24 Total: -63.72 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.71 Total: -18.99 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.99 -8.32 -48.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714070877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.458 kcal (2) G-P(sol) polarization free energy of solvation -39.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds