Wall clock time and date at job start Tue Mar 31 2020 19:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34334 * 126.44375 * 2 1 4 4 N 1.34475 * 107.67108 * 180.02562 * 3 2 1 5 5 C 1.30255 * 108.69826 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.61716 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46875 * 90.02409 * 6 5 4 8 8 C 1.42899 * 113.99607 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46876 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46923 * 120.63273 * 0.28271 * 11 9 8 13 13 C 1.53188 * 108.78248 * 126.36632 * 12 11 9 14 14 C 1.53041 * 109.31323 * 54.63155 * 13 12 11 15 15 C 1.53042 * 109.53960 * 298.64003 * 14 13 12 16 16 H 1.09003 * 109.49689 * 301.41711 * 15 14 13 17 17 C 1.52994 * 109.50004 * 181.34864 * 15 14 13 18 18 N 1.46498 * 109.47522 * 175.00155 * 17 15 14 19 19 C 1.36935 * 120.00098 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00022 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99616 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00445 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99468 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47044 * 90.00420 * 23 21 19 25 25 H 1.48506 * 109.46663 * 209.99391 * 23 21 19 26 26 H 1.48490 * 109.47303 * 329.99854 * 23 21 19 27 27 C 1.46929 * 120.63092 * 179.97438 * 11 9 8 28 28 O 1.33965 * 108.76353 * 0.22588 * 5 4 3 29 29 H 1.09002 * 109.47039 * 90.00539 * 1 2 3 30 30 H 1.09000 * 109.47106 * 209.99970 * 1 2 3 31 31 H 1.08995 * 109.47511 * 329.99951 * 1 2 3 32 32 H 1.08003 * 126.16477 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.47255 * 330.02536 * 6 5 4 34 34 H 1.09001 * 109.46743 * 210.02180 * 6 5 4 35 35 H 1.09004 * 109.47206 * 60.00168 * 8 7 6 36 36 H 1.08994 * 109.47548 * 299.99825 * 8 7 6 37 37 H 1.09001 * 109.58890 * 246.15338 * 12 11 9 38 38 H 1.09008 * 109.58793 * 6.43010 * 12 11 9 39 39 H 1.08997 * 109.49933 * 174.58934 * 13 12 11 40 40 H 1.09004 * 109.49155 * 294.68607 * 13 12 11 41 41 H 1.09004 * 109.45546 * 58.65884 * 14 13 12 42 42 H 1.09004 * 109.46076 * 178.63179 * 14 13 12 43 43 H 1.09002 * 109.46830 * 294.99897 * 17 15 14 44 44 H 1.08999 * 109.47072 * 54.99755 * 17 15 14 45 45 H 0.97002 * 119.99492 * 359.97438 * 18 17 15 46 46 H 0.97001 * 120.00229 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.58730 * 353.42298 * 27 11 9 48 48 H 1.09003 * 109.58586 * 113.84896 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 -0.0006 5 6 3.5765 -0.6547 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 8 5.1879 -1.8132 1.3440 8 6 6.3445 -2.6449 1.4554 9 6 6.6611 -2.8725 2.9111 10 8 5.9645 -2.3722 3.7687 11 7 7.7148 -3.6371 3.2600 12 6 8.5676 -4.2502 2.2328 13 6 10.0246 -3.8646 2.5068 14 6 10.3899 -4.2536 3.9412 15 6 9.4958 -3.4913 4.9218 16 1 9.6225 -2.4191 4.7715 17 6 9.8843 -3.8554 6.3561 18 7 9.1109 -3.0379 7.2940 19 6 9.2898 -3.1895 8.6432 20 1 10.0008 -3.9120 9.0157 21 6 8.5574 -2.4144 9.5318 22 7 7.6913 -1.5335 9.0778 23 14 8.8009 -2.6219 11.3723 24 1 9.8696 -1.7013 11.8370 25 1 7.5334 -2.3049 12.0781 26 1 9.1934 -4.0238 11.6648 27 6 8.0364 -3.8677 4.6750 28 8 2.3075 -1.0839 -0.0065 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9821 2.1113 -0.0004 33 1 5.6146 -1.0226 -0.5165 34 1 4.5760 -2.4682 -0.5176 35 1 7.1909 -2.1569 0.9719 36 1 6.1518 -3.6021 0.9712 37 1 8.4633 -5.3346 2.2708 38 1 8.2708 -3.8890 1.2480 39 1 10.6773 -4.3902 1.8098 40 1 10.1463 -2.7889 2.3794 41 1 10.2443 -5.3256 4.0749 42 1 11.4335 -4.0024 4.1310 43 1 9.6727 -4.9099 6.5332 44 1 10.9481 -3.6686 6.5029 45 1 8.4721 -2.3891 6.9593 46 1 7.1797 -0.9917 9.6988 47 1 7.3908 -3.2522 5.3016 48 1 7.8878 -4.9202 4.9166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714070877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:08 Heat of formation + Delta-G solvation = -72.611239 kcal Electronic energy + Delta-G solvation = -28738.257271 eV Core-core repulsion = 24601.343399 eV Total energy + Delta-G solvation = -4136.913872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.41427 -41.35061 -39.34637 -38.37742 -36.62663 -35.86462 -34.52773 -33.73206 -33.07495 -31.69769 -30.64415 -28.86718 -27.09379 -26.30118 -25.73238 -24.84298 -23.41116 -22.67856 -22.19226 -21.57232 -20.11678 -19.20230 -18.76993 -18.21684 -17.83522 -17.40127 -17.33918 -16.73621 -16.58299 -16.08732 -15.98205 -15.56255 -15.39189 -15.33068 -15.20620 -14.78613 -14.36633 -14.12942 -14.06214 -14.01664 -13.89444 -13.72580 -13.31928 -13.18705 -13.06257 -13.00135 -12.86849 -12.64891 -12.47184 -12.18637 -12.04209 -11.93605 -11.82494 -11.66697 -11.54234 -11.30482 -10.97998 -10.91833 -10.77985 -9.78590 -9.66204 -9.03421 -7.96212 -5.27266 0.21615 1.33130 1.43118 1.46849 1.54288 1.55399 1.61864 1.84216 2.53920 2.75514 3.19460 3.36566 3.53815 3.73111 3.75838 3.90266 3.92023 3.98179 4.05336 4.11586 4.14588 4.18368 4.21397 4.26749 4.35826 4.46944 4.47803 4.60791 4.64990 4.65266 4.77017 4.84290 4.92182 4.93244 4.97185 5.03881 5.12133 5.15063 5.23950 5.25632 5.36101 5.45925 5.49655 5.53726 5.85530 6.23918 6.41602 6.61109 7.16104 7.29015 8.06224 8.27876 9.27376 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.002331 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.717503 B =12008.631481 C =14189.381920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.040 4.040 3 C -0.069 4.069 4 N -0.492 5.492 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.403 6.403 8 C 0.056 3.944 9 C 0.495 3.505 10 O -0.588 6.588 11 N -0.605 5.605 12 C 0.096 3.904 13 C -0.129 4.129 14 C -0.107 4.107 15 C -0.095 4.095 16 H 0.048 0.952 17 C 0.157 3.843 18 N -0.750 5.750 19 C -0.246 4.246 20 H 0.082 0.918 21 C -0.084 4.084 22 N -0.974 5.974 23 Si 0.980 3.020 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.264 1.264 27 C 0.128 3.872 28 O -0.209 6.209 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.209 0.791 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.369 0.631 46 H 0.250 0.750 47 H 0.043 0.957 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -5.608 -30.747 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.207 4.207 4 N -0.223 5.223 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.322 6.322 8 C -0.022 4.022 9 C 0.284 3.716 10 O -0.467 6.467 11 N -0.339 5.339 12 C -0.025 4.025 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.115 4.115 16 H 0.066 0.934 17 C 0.030 3.970 18 N -0.392 5.392 19 C -0.377 4.377 20 H 0.099 0.901 21 C -0.275 4.275 22 N -0.625 5.625 23 Si 0.808 3.192 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.189 1.189 27 C 0.005 3.995 28 O -0.096 6.096 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.226 0.774 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.200 0.800 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.746 -5.094 -30.014 30.810 hybrid contribution -0.884 0.374 1.577 1.845 sum -5.629 -4.720 -28.437 29.371 Atomic orbital electron populations 1.20554 0.80588 1.05739 1.05535 1.24439 0.96893 0.83808 1.04151 1.23635 0.87111 1.02090 1.07894 1.70381 1.24908 1.10057 1.16990 1.26232 0.84829 0.90275 1.02783 1.20854 0.88641 0.97921 0.84211 1.88047 1.46918 1.70734 1.26517 1.22474 0.89880 0.98028 0.91804 1.21248 0.80317 0.77847 0.92190 1.90790 1.51091 1.50824 1.54008 1.48221 1.28419 1.49634 1.07625 1.22274 0.89730 0.99523 0.90933 1.21935 0.96073 1.02234 0.96427 1.21524 0.98754 1.00265 0.93942 1.21472 0.94765 0.99980 0.95259 0.93351 1.20874 0.94245 0.93906 0.87975 1.42712 1.48147 1.45774 1.02607 1.19700 1.17669 1.16347 0.84005 0.90062 1.25726 0.99477 0.99289 1.03037 1.69886 1.29904 1.27945 1.34787 0.85050 0.76404 0.78210 0.79550 1.21156 1.22475 1.18856 1.21259 0.96036 1.00614 0.81586 1.84384 1.18076 1.37590 1.69583 0.87404 0.89948 0.86828 0.77419 0.86083 0.86240 0.85908 0.85147 0.88821 0.86145 0.86639 0.92224 0.90195 0.90765 0.95427 0.95423 0.79960 0.94169 0.93859 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.43 71.23 0.74 0.10 16 2 C -0.04 -0.79 7.39 24.79 0.18 -0.61 16 3 C -0.07 -1.52 11.80 83.40 0.98 -0.54 16 4 N -0.49 -13.71 11.29 -303.82 -3.43 -17.14 16 5 C 0.17 4.15 7.97 88.34 0.70 4.86 16 6 C 0.16 2.76 6.56 71.24 0.47 3.23 16 7 O -0.40 -10.76 9.86 -129.94 -1.28 -12.04 16 8 C 0.06 1.04 4.76 71.24 0.34 1.38 16 9 C 0.50 15.78 7.78 87.66 0.68 16.46 16 10 O -0.59 -27.92 15.91 16.00 0.25 -27.67 16 11 N -0.60 -16.14 2.98 -819.78 -2.44 -18.58 16 12 C 0.10 1.25 6.34 86.36 0.55 1.79 16 13 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 14 C -0.11 -2.20 5.17 30.62 0.16 -2.04 16 15 C -0.10 -3.13 2.36 -10.87 -0.03 -3.16 16 16 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 17 C 0.16 6.44 5.66 86.38 0.49 6.93 16 18 N -0.75 -41.24 5.38 -343.47 -1.85 -43.09 16 19 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.08 -5.14 5.50 84.86 0.47 -4.68 16 22 N -0.97 -65.19 13.06 21.65 0.28 -64.91 16 23 Si 0.98 48.82 29.55 68.60 2.03 50.84 16 24 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 26 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 27 C 0.13 4.54 5.49 86.21 0.47 5.01 16 28 O -0.21 -5.14 10.78 -3.69 -0.04 -5.18 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.21 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.12 1.30 7.70 -2.38 -0.02 1.28 16 36 H 0.13 1.13 7.94 -2.39 -0.02 1.12 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.12 0.61 5.94 -2.38 -0.01 0.59 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.37 22.48 6.89 -92.71 -0.64 21.84 16 46 H 0.25 16.18 8.31 -92.71 -0.77 15.41 16 47 H 0.04 2.07 6.20 -2.39 -0.01 2.06 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -98.20 396.26 1.09 -97.11 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.33 Total: 27.17 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 7.24 Total: 13.49 kcal Atomic # 7 Polarization: -136.28 SS G_CDS: -7.44 Total: -143.72 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.07 Total: -44.90 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.84 kcal Total: -98.20 1.09 -97.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714070877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.504 kcal (2) G-P(sol) polarization free energy of solvation -98.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds