Wall clock time and date at job start Tue Mar 31 2020 21:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46988 * 2 1 4 4 O 1.33657 * 125.80697 * 270.00393 * 3 2 1 5 5 C 1.34215 * 110.90781 * 179.97438 * 4 3 2 6 6 C 1.34176 * 109.12518 * 359.75160 * 5 4 3 7 7 C 1.36417 * 125.79867 * 90.00393 * 3 2 1 8 8 C 1.47378 * 127.19359 * 359.96659 * 7 3 2 9 9 O 1.21612 * 119.99826 * 359.97438 * 8 7 3 10 10 N 1.34778 * 120.00296 * 180.02562 * 8 7 3 11 11 C 1.46499 * 120.00004 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47210 * 34.99777 * 11 10 8 13 13 C 1.53000 * 109.46933 * 274.99442 * 11 10 8 14 14 C 1.53004 * 109.46956 * 155.00083 * 11 10 8 15 15 C 1.53008 * 109.46689 * 294.99729 * 14 11 10 16 16 N 1.46902 * 109.46622 * 180.02562 * 15 14 11 17 17 C 1.46906 * 110.99573 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46990 * 180.02562 * 17 16 15 19 19 O 1.21287 * 119.99883 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00013 * 179.97438 * 20 18 17 22 22 H 1.07992 * 119.99812 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99796 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00211 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99595 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47219 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46853 * 120.00096 * 25 23 21 28 28 H 1.48502 * 109.47406 * 239.99902 * 25 23 21 29 29 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47158 * 299.99350 * 1 2 3 31 31 H 1.08991 * 109.47885 * 59.99534 * 1 2 3 32 32 H 1.09008 * 109.46881 * 240.00855 * 2 1 3 33 33 H 1.08991 * 109.47885 * 120.00466 * 2 1 3 34 34 H 1.08001 * 125.43068 * 179.97438 * 5 4 3 35 35 H 1.07999 * 127.02131 * 180.26385 * 6 5 4 36 36 H 0.97003 * 119.99664 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47093 * 60.00613 * 13 11 10 38 38 H 1.09000 * 109.47134 * 179.97438 * 13 11 10 39 39 H 1.08996 * 109.47447 * 300.00190 * 13 11 10 40 40 H 1.09006 * 109.46807 * 175.00088 * 14 11 10 41 41 H 1.08995 * 109.47458 * 54.99705 * 14 11 10 42 42 H 1.08990 * 109.46924 * 60.00331 * 15 14 11 43 43 H 1.09004 * 109.46978 * 300.00208 * 15 14 11 44 44 H 1.00896 * 111.00219 * 303.95583 * 16 15 14 45 45 H 1.09002 * 109.46991 * 299.99841 * 17 16 15 46 46 H 1.09000 * 109.47202 * 60.00133 * 17 16 15 47 47 H 0.97000 * 120.00083 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00198 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2928 2.1581 -1.0839 5 6 2.7246 3.3811 -0.7389 6 6 2.7521 3.4763 0.5992 7 6 2.2983 2.1731 1.1064 8 6 2.1541 1.7669 2.5158 9 8 1.7580 0.6500 2.7891 10 7 2.4600 2.6334 3.5016 11 6 2.3161 2.2297 4.9025 12 1 2.5676 1.1741 5.0041 13 6 0.8713 2.4555 5.3524 14 6 3.2576 3.0645 5.7731 15 6 4.7084 2.7449 5.4068 16 7 5.6123 3.5458 6.2431 17 6 7.0172 3.2642 5.9189 18 6 7.9125 4.1018 6.7951 19 8 7.4280 4.8585 7.6099 20 7 9.2516 4.0093 6.6742 21 6 10.0662 4.7717 7.4711 22 1 9.6347 5.4466 8.1953 23 6 11.4468 4.6767 7.3460 24 7 11.9717 3.8565 6.4636 25 14 12.5566 5.7160 8.4312 26 1 11.7246 6.5511 9.3343 27 1 13.4282 4.8282 9.2420 28 1 13.3992 6.5943 7.5805 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8898 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 3.0019 4.1648 -1.4283 35 1 3.0492 4.3342 1.1842 36 1 2.7756 3.5244 3.2836 37 1 0.2005 1.8608 4.7323 38 1 0.7640 2.1547 6.3946 39 1 0.6198 3.5112 5.2508 40 1 3.0873 2.8272 6.8233 41 1 3.0651 4.1239 5.6041 42 1 4.8786 2.9821 4.3567 43 1 4.9008 1.6853 5.5758 44 1 5.4105 4.5304 6.1535 45 1 7.2252 2.2083 6.0914 46 1 7.2039 3.5051 4.8723 47 1 9.6391 3.4039 6.0229 48 1 12.9355 3.7904 6.3760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716136550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:45 Heat of formation + Delta-G solvation = -75.655829 kcal Electronic energy + Delta-G solvation = -28283.330538 eV Core-core repulsion = 24146.284643 eV Total energy + Delta-G solvation = -4137.045896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.92958 -39.85029 -38.31592 -36.94635 -35.04246 -34.30327 -33.83272 -33.30909 -31.50539 -31.18674 -29.32995 -29.02971 -26.24628 -24.82275 -24.05654 -23.34740 -22.29897 -21.67323 -20.72027 -20.05672 -19.21729 -18.22419 -17.87889 -16.63519 -16.57540 -16.19145 -16.09296 -15.51807 -15.17618 -14.83148 -14.73851 -14.60814 -14.36921 -14.03791 -13.81050 -13.73292 -13.63036 -13.32593 -13.07350 -13.03181 -12.68646 -12.63481 -12.25060 -12.22953 -11.88886 -11.69624 -11.52211 -11.36529 -11.31035 -11.13028 -11.05923 -10.94760 -10.34693 -10.22789 -10.17065 -10.12853 -9.52393 -9.32635 -8.92121 -8.46265 -8.06139 -7.96170 -6.42057 -3.82933 1.05438 1.70169 2.43597 3.00794 3.13080 3.16012 3.26538 3.33879 3.90490 4.04234 4.10758 4.25517 4.46800 4.48860 4.73787 4.79080 4.83517 4.89684 4.98924 5.02891 5.15016 5.18264 5.24405 5.26765 5.29278 5.37833 5.51441 5.53154 5.54506 5.62079 5.70789 5.75780 5.79622 5.86389 5.92511 5.93641 5.96232 6.01578 6.08315 6.27029 6.34284 6.67176 7.20688 7.30391 7.55101 7.65926 8.02487 8.06339 8.60939 9.17596 9.54144 10.05473 10.75764 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.001892 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.451605 B =14797.769095 C =15882.162838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.037 4.037 6 C -0.189 4.189 7 C -0.245 4.245 8 C 0.592 3.408 9 O -0.541 6.541 10 N -0.717 5.717 11 C 0.144 3.856 12 H 0.091 0.909 13 C -0.161 4.161 14 C -0.125 4.125 15 C 0.059 3.941 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.208 0.792 35 H 0.157 0.843 36 H 0.399 0.601 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.348 0.652 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.496 -4.841 -16.033 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C 0.028 3.972 4 O -0.071 6.071 5 C -0.103 4.103 6 C -0.209 4.209 7 C -0.250 4.250 8 C 0.380 3.620 9 O -0.420 6.420 10 N -0.368 5.368 11 C 0.040 3.960 12 H 0.110 0.890 13 C -0.220 4.220 14 C -0.163 4.163 15 C -0.070 4.070 16 N -0.301 5.301 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.225 0.775 35 H 0.174 0.826 36 H 0.234 0.766 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.167 0.833 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.940 -5.689 -15.060 28.025 hybrid contribution 1.387 1.358 -0.810 2.103 sum -21.553 -4.331 -15.870 27.114 Atomic orbital electron populations 1.21680 0.93302 1.02698 1.02314 1.20410 0.96991 0.86386 1.05209 1.22889 0.96781 0.94393 0.83113 1.83780 1.65144 1.23181 1.35034 1.23885 1.03909 0.86058 0.96460 1.22881 1.05591 0.97748 0.94633 1.21171 1.14037 0.95832 0.93950 1.17170 0.76762 0.84371 0.83694 1.90753 1.46914 1.20338 1.84022 1.45928 1.67935 1.16942 1.05996 1.21004 0.95182 1.00506 0.79353 0.89045 1.22156 0.96035 1.01968 1.01814 1.21887 0.93600 0.99947 1.00881 1.21967 0.91807 0.98978 0.94271 1.60059 1.01805 1.11947 1.56330 1.21667 0.88661 1.00776 0.97080 1.19815 0.83111 0.86972 0.87467 1.90517 1.74711 1.42124 1.39415 1.41878 1.04158 1.38730 1.35325 1.19760 0.87248 1.19614 1.16220 0.87849 1.25276 0.97412 0.97700 0.97654 1.69621 1.12747 1.37126 1.34817 0.85793 0.79619 0.79354 0.79533 1.19208 1.20731 1.20785 0.91287 0.91896 0.92690 0.89993 0.86721 0.77529 0.82572 0.76634 0.92164 0.91313 0.92488 0.89017 0.91369 0.95634 0.91063 0.83323 0.89633 0.93996 0.77461 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.05 -0.44 5.94 -27.89 -0.17 -0.60 16 3 C 0.08 0.79 6.63 -34.97 -0.23 0.56 16 4 O -0.18 -1.59 10.52 7.64 0.08 -1.51 16 5 C -0.04 -0.26 12.03 29.30 0.35 0.09 16 6 C -0.19 -1.49 10.60 -37.46 -0.40 -1.89 16 7 C -0.25 -2.49 6.31 -103.28 -0.65 -3.14 16 8 C 0.59 6.63 7.78 -12.54 -0.10 6.53 16 9 O -0.54 -7.32 14.51 5.27 0.08 -7.24 16 10 N -0.72 -6.58 4.53 -54.90 -0.25 -6.83 16 11 C 0.14 1.34 2.57 -67.93 -0.17 1.17 16 12 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16 13 C -0.16 -1.37 9.48 37.16 0.35 -1.01 16 14 C -0.12 -1.20 5.01 -26.72 -0.13 -1.34 16 15 C 0.06 0.72 5.57 -3.82 -0.02 0.69 16 16 N -0.67 -10.67 6.12 -115.05 -0.70 -11.38 16 17 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 18 C 0.44 10.50 7.82 -10.99 -0.09 10.41 16 19 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 20 N -0.56 -14.43 5.29 -10.97 -0.06 -14.49 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 25 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.11 1.09 6.49 -51.93 -0.34 0.76 16 34 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.16 0.89 7.74 -52.49 -0.41 0.48 16 36 H 0.40 2.99 7.77 -40.82 -0.32 2.67 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.29 7.75 -51.93 -0.40 -0.11 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 406.55 15.07 6.13 6.13 Total: -1.00 -33.83 406.55 -7.61 -41.44 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -7.52 Total: 13.94 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.16 Total: 3.62 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.29 Total: -56.63 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.24 Total: -24.58 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.83 -7.61 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716136550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.214 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds