Wall clock time and date at job start Tue Mar 31 2020 21:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46988 * 2 1 4 4 O 1.33657 * 125.80697 * 270.00393 * 3 2 1 5 5 C 1.34215 * 110.90781 * 179.97438 * 4 3 2 6 6 C 1.34176 * 109.12518 * 359.75160 * 5 4 3 7 7 C 1.36417 * 125.79867 * 90.00393 * 3 2 1 8 8 C 1.47378 * 127.19359 * 359.96659 * 7 3 2 9 9 O 1.21612 * 119.99826 * 359.97438 * 8 7 3 10 10 N 1.34778 * 120.00296 * 180.02562 * 8 7 3 11 11 C 1.46499 * 120.00004 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47210 * 34.99777 * 11 10 8 13 13 C 1.53000 * 109.46933 * 274.99442 * 11 10 8 14 14 C 1.53004 * 109.46956 * 155.00083 * 11 10 8 15 15 C 1.53008 * 109.46689 * 294.99729 * 14 11 10 16 16 N 1.46902 * 109.46622 * 180.02562 * 15 14 11 17 17 C 1.46906 * 110.99573 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46990 * 180.02562 * 17 16 15 19 19 O 1.21287 * 119.99883 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00013 * 179.97438 * 20 18 17 22 22 H 1.07992 * 119.99812 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99796 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00211 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99595 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47219 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46853 * 120.00096 * 25 23 21 28 28 H 1.48502 * 109.47406 * 239.99902 * 25 23 21 29 29 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47158 * 299.99350 * 1 2 3 31 31 H 1.08991 * 109.47885 * 59.99534 * 1 2 3 32 32 H 1.09008 * 109.46881 * 240.00855 * 2 1 3 33 33 H 1.08991 * 109.47885 * 120.00466 * 2 1 3 34 34 H 1.08001 * 125.43068 * 179.97438 * 5 4 3 35 35 H 1.07999 * 127.02131 * 180.26385 * 6 5 4 36 36 H 0.97003 * 119.99664 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47093 * 60.00613 * 13 11 10 38 38 H 1.09000 * 109.47134 * 179.97438 * 13 11 10 39 39 H 1.08996 * 109.47447 * 300.00190 * 13 11 10 40 40 H 1.09006 * 109.46807 * 175.00088 * 14 11 10 41 41 H 1.08995 * 109.47458 * 54.99705 * 14 11 10 42 42 H 1.08990 * 109.46924 * 60.00331 * 15 14 11 43 43 H 1.09004 * 109.46978 * 300.00208 * 15 14 11 44 44 H 1.00896 * 111.00219 * 303.95583 * 16 15 14 45 45 H 1.09002 * 109.46991 * 299.99841 * 17 16 15 46 46 H 1.09000 * 109.47202 * 60.00133 * 17 16 15 47 47 H 0.97000 * 120.00083 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00198 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2928 2.1581 -1.0839 5 6 2.7246 3.3811 -0.7389 6 6 2.7521 3.4763 0.5992 7 6 2.2983 2.1731 1.1064 8 6 2.1541 1.7669 2.5158 9 8 1.7580 0.6500 2.7891 10 7 2.4600 2.6334 3.5016 11 6 2.3161 2.2297 4.9025 12 1 2.5676 1.1741 5.0041 13 6 0.8713 2.4555 5.3524 14 6 3.2576 3.0645 5.7731 15 6 4.7084 2.7449 5.4068 16 7 5.6123 3.5458 6.2431 17 6 7.0172 3.2642 5.9189 18 6 7.9125 4.1018 6.7951 19 8 7.4280 4.8585 7.6099 20 7 9.2516 4.0093 6.6742 21 6 10.0662 4.7717 7.4711 22 1 9.6347 5.4466 8.1953 23 6 11.4468 4.6767 7.3460 24 7 11.9717 3.8565 6.4636 25 14 12.5566 5.7160 8.4312 26 1 11.7246 6.5511 9.3343 27 1 13.4282 4.8282 9.2420 28 1 13.3992 6.5943 7.5805 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8898 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 3.0019 4.1648 -1.4283 35 1 3.0492 4.3342 1.1842 36 1 2.7756 3.5244 3.2836 37 1 0.2005 1.8608 4.7323 38 1 0.7640 2.1547 6.3946 39 1 0.6198 3.5112 5.2508 40 1 3.0873 2.8272 6.8233 41 1 3.0651 4.1239 5.6041 42 1 4.8786 2.9821 4.3567 43 1 4.9008 1.6853 5.5758 44 1 5.4105 4.5304 6.1535 45 1 7.2252 2.2083 6.0914 46 1 7.2039 3.5051 4.8723 47 1 9.6391 3.4039 6.0229 48 1 12.9355 3.7904 6.3760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716136550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:44 Heat of formation + Delta-G solvation = -100.233398 kcal Electronic energy + Delta-G solvation = -28284.396302 eV Core-core repulsion = 24146.284643 eV Total energy + Delta-G solvation = -4138.111659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.56256 -40.69227 -40.15198 -37.96216 -36.31627 -35.71893 -34.95576 -34.01467 -33.28393 -32.29274 -30.34642 -29.68656 -27.79899 -25.91933 -25.34895 -24.03060 -23.26704 -22.43411 -21.52900 -21.10496 -20.70177 -19.91136 -18.87459 -17.84994 -17.43731 -17.29342 -16.98366 -16.77345 -16.48326 -16.01110 -15.85504 -15.66643 -15.36458 -15.26553 -15.13177 -14.96594 -14.60250 -14.25545 -13.96377 -13.80451 -13.63387 -13.55295 -13.48688 -13.29822 -13.20360 -12.93771 -12.80921 -12.48719 -12.41876 -12.27025 -12.12534 -12.05699 -11.96705 -11.79677 -11.52137 -10.99064 -10.83934 -10.37569 -10.10818 -10.02721 -9.55447 -9.33587 -8.47602 -5.96594 0.32953 1.12435 1.36439 1.41873 1.56285 1.82470 2.03517 2.27455 2.28593 2.33735 2.87587 3.19504 3.48130 3.54880 3.76186 3.86969 3.91433 4.03980 4.14359 4.20013 4.29352 4.29887 4.42941 4.44129 4.45878 4.52046 4.58507 4.62065 4.67606 4.72419 4.82809 4.93739 4.95852 5.01835 5.06232 5.11944 5.18837 5.27103 5.32111 5.37718 5.40530 5.56744 5.87331 6.04105 6.08495 6.42031 6.56030 6.58646 7.11443 7.22986 7.54789 8.09660 8.70029 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.001892 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.451605 B =14797.769095 C =15882.162838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C 0.068 3.932 4 O -0.183 6.183 5 C -0.032 4.032 6 C -0.199 4.199 7 C -0.267 4.267 8 C 0.587 3.413 9 O -0.572 6.572 10 N -0.707 5.707 11 C 0.150 3.850 12 H 0.074 0.926 13 C -0.156 4.156 14 C -0.113 4.113 15 C 0.063 3.937 16 N -0.681 5.681 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.245 0.755 35 H 0.177 0.823 36 H 0.409 0.591 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.066 0.934 44 H 0.347 0.653 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.486 -4.087 -17.103 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C 0.015 3.985 4 O -0.079 6.079 5 C -0.097 4.097 6 C -0.218 4.218 7 C -0.272 4.272 8 C 0.376 3.624 9 O -0.454 6.454 10 N -0.359 5.359 11 C 0.045 3.955 12 H 0.092 0.908 13 C -0.214 4.214 14 C -0.151 4.151 15 C -0.066 4.066 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.261 0.739 35 H 0.195 0.805 36 H 0.246 0.754 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.165 0.835 45 H 0.117 0.883 46 H 0.083 0.917 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.931 -4.935 -16.152 28.480 hybrid contribution 1.346 1.122 -0.508 1.824 sum -21.585 -3.813 -16.660 27.532 Atomic orbital electron populations 1.21635 0.92679 1.03403 1.01682 1.20410 0.97498 0.86002 1.05127 1.23130 0.97037 0.95001 0.83374 1.83789 1.65240 1.23983 1.34869 1.24668 1.02249 0.85783 0.97033 1.23163 1.05924 0.97465 0.95254 1.21307 1.15091 0.97321 0.93450 1.17416 0.76385 0.84128 0.84484 1.90732 1.48432 1.21661 1.84556 1.45851 1.67282 1.17124 1.05613 1.20902 0.95703 0.99470 0.79408 0.90777 1.22096 0.94875 1.02404 1.02006 1.21773 0.91937 1.00742 1.00673 1.22002 0.92241 0.98027 0.94292 1.60051 1.01184 1.12344 1.57826 1.21519 0.88597 0.99979 0.96694 1.20847 0.83020 0.86433 0.87147 1.90485 1.75336 1.43822 1.41182 1.41953 1.04860 1.38864 1.35409 1.19721 0.88402 1.20873 1.17310 0.90207 1.26076 0.98122 0.98547 0.98689 1.69680 1.13452 1.37630 1.35416 0.84847 0.77591 0.77890 0.77861 1.19705 1.19690 1.19514 0.89950 0.93800 0.91885 0.88306 0.88468 0.73877 0.80530 0.75446 0.93603 0.90413 0.91373 0.89246 0.89969 0.94498 0.91538 0.83458 0.88326 0.91673 0.77019 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.05 -0.88 5.94 29.85 0.18 -0.70 16 3 C 0.07 1.30 6.63 25.26 0.17 1.46 16 4 O -0.18 -3.07 10.52 4.42 0.05 -3.03 16 5 C -0.03 -0.38 12.03 66.89 0.80 0.42 16 6 C -0.20 -2.78 10.60 23.65 0.25 -2.53 16 7 C -0.27 -5.29 6.31 -18.99 -0.12 -5.41 16 8 C 0.59 13.13 7.78 86.65 0.67 13.80 16 9 O -0.57 -15.98 14.51 -4.07 -0.06 -16.04 16 10 N -0.71 -12.29 4.53 -445.84 -2.02 -14.31 16 11 C 0.15 2.66 2.57 44.99 0.12 2.78 16 12 H 0.07 1.61 7.58 -2.39 -0.02 1.60 16 13 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 14 C -0.11 -1.99 5.01 30.60 0.15 -1.84 16 15 C 0.06 1.41 5.57 86.31 0.48 1.90 16 16 N -0.68 -20.80 6.12 -517.91 -3.17 -23.98 16 17 C 0.06 2.22 6.17 85.56 0.53 2.75 16 18 C 0.44 20.90 7.82 87.66 0.69 21.58 16 19 O -0.62 -34.38 15.78 -3.05 -0.05 -34.43 16 20 N -0.57 -29.60 5.29 -307.00 -1.62 -31.23 16 21 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -49.83 13.05 21.66 0.28 -49.54 16 25 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.10 1.95 6.49 -2.39 -0.02 1.94 16 34 H 0.25 0.74 8.06 -2.91 -0.02 0.71 16 35 H 0.18 1.56 7.74 -2.91 -0.02 1.53 16 36 H 0.41 5.39 7.77 -92.71 -0.72 4.67 16 37 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.04 0.76 7.75 -2.39 -0.02 0.74 16 43 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.35 10.73 8.43 -89.70 -0.76 9.97 16 45 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.40 19.45 7.90 -92.71 -0.73 18.71 16 48 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -73.89 406.55 0.82 -73.07 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -1.21 Total: 41.90 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.59 Total: 12.64 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -6.53 Total: -119.06 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.06 Total: -53.49 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.89 0.82 -73.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716136550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.160 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds