Wall clock time and date at job start Tue Mar 31 2020 19:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34328 * 126.44651 * 2 1 4 4 N 1.34477 * 107.67295 * 179.72582 * 3 2 1 5 5 C 1.30260 * 108.69507 * 0.41683 * 4 3 2 6 6 C 1.50701 * 125.61558 * 179.84061 * 5 4 3 7 7 O 1.42903 * 109.46878 * 89.69499 * 6 5 4 8 8 C 1.42899 * 113.99629 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47140 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00000 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00301 * 180.02562 * 9 8 7 12 12 C 1.47019 * 125.64472 * 0.02562 * 11 9 8 13 13 C 1.54332 * 107.26762 * 181.02496 * 12 11 9 14 14 C 1.55152 * 102.94038 * 22.20011 * 13 12 11 15 15 H 1.08999 * 111.00618 * 82.61145 * 14 13 12 16 16 C 1.53006 * 111.00298 * 206.41944 * 14 13 12 17 17 C 1.52997 * 109.47100 * 184.99924 * 16 14 13 18 18 N 1.46502 * 109.46949 * 180.02562 * 17 16 14 19 19 C 1.36935 * 120.00119 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00269 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99544 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00036 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47171 * 60.00068 * 23 21 19 25 25 H 1.48505 * 109.46897 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47198 * 300.00067 * 23 21 19 27 27 C 1.47419 * 125.64861 * 179.71564 * 11 9 8 28 28 O 1.33962 * 108.76467 * 359.58084 * 5 4 3 29 29 H 1.08997 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47166 * 300.01007 * 1 2 3 31 31 H 1.09001 * 109.46748 * 60.00088 * 1 2 3 32 32 H 1.08006 * 126.16596 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47060 * 209.69630 * 6 5 4 34 34 H 1.09001 * 109.47380 * 329.69717 * 6 5 4 35 35 H 1.09007 * 109.47484 * 299.99646 * 8 7 6 36 36 H 1.09004 * 109.47459 * 59.99983 * 8 7 6 37 37 H 1.08994 * 109.88637 * 300.44582 * 12 11 9 38 38 H 1.09005 * 109.88335 * 61.61808 * 12 11 9 39 39 H 1.09009 * 110.71550 * 140.56243 * 13 12 11 40 40 H 1.08996 * 110.71996 * 263.65131 * 13 12 11 41 41 H 1.09003 * 109.46894 * 305.00465 * 16 14 13 42 42 H 1.09004 * 109.46640 * 64.99978 * 16 14 13 43 43 H 1.08998 * 109.47241 * 299.99918 * 17 16 14 44 44 H 1.08990 * 109.47105 * 60.00553 * 17 16 14 45 45 H 0.97007 * 120.00026 * 359.97438 * 18 17 16 46 46 H 0.97003 * 119.99951 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36840 * 274.74262 * 27 11 9 48 48 H 1.09006 * 110.36927 * 37.06431 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6478 0.0061 5 6 3.5765 -0.6548 0.0009 6 6 4.8004 -1.5341 0.0015 7 8 5.1868 -1.8116 1.3490 8 6 6.3434 -2.6432 1.4624 9 6 6.6582 -2.8700 2.9185 10 8 5.9611 -2.3684 3.7749 11 7 7.7151 -3.6293 3.2693 12 6 8.6400 -4.2926 2.3386 13 6 9.6699 -5.0655 3.1893 14 6 8.9314 -5.2562 4.5404 15 1 8.2601 -6.1141 4.5011 16 6 9.9264 -5.3948 5.6945 17 6 9.1685 -5.7048 6.9868 18 7 10.1212 -5.8369 8.0919 19 6 9.6708 -6.1162 9.3545 20 1 8.6132 -6.2388 9.5358 21 6 10.5735 -6.2419 10.4016 22 7 11.8624 -6.0931 10.1805 23 14 9.9590 -6.6223 12.1240 24 1 9.2357 -7.9191 12.1164 25 1 11.1134 -6.7042 13.0546 26 1 9.0394 -5.5452 12.5706 27 6 8.1389 -3.9270 4.6495 28 8 2.3075 -1.0840 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9822 2.1113 -0.0004 33 1 4.5764 -2.4690 -0.5122 34 1 5.6149 -1.0234 -0.5122 35 1 6.1510 -3.6012 0.9792 36 1 7.1901 -2.1559 0.9788 37 1 8.0909 -4.9855 1.7011 38 1 9.1489 -3.5471 1.7274 39 1 9.8989 -6.0298 2.7354 40 1 10.5783 -4.4782 3.3227 41 1 10.6229 -6.2049 5.4783 42 1 10.4787 -4.4624 5.8118 43 1 8.4720 -4.8947 7.2029 44 1 8.6163 -6.6371 6.8694 45 1 11.0712 -5.7272 7.9291 46 1 12.4933 -6.1805 10.9122 47 1 8.7790 -3.1310 5.0298 48 1 7.2692 -4.0561 5.2939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717090772.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:24 Heat of formation + Delta-G solvation = -41.544598 kcal Electronic energy + Delta-G solvation = -27686.659924 eV Core-core repulsion = 23551.093203 eV Total energy + Delta-G solvation = -4135.566722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.73933 -40.31693 -38.59962 -37.43063 -35.14706 -35.14054 -33.23271 -33.02768 -31.15186 -30.19011 -29.56445 -28.34776 -26.57790 -25.54385 -24.07784 -23.06409 -22.74023 -21.52999 -21.27557 -20.24762 -19.63430 -18.04038 -17.56258 -17.14751 -17.05333 -16.81367 -16.62155 -15.88665 -15.54211 -15.13816 -14.86422 -14.64359 -14.34947 -14.01161 -13.77113 -13.61641 -13.60371 -13.35244 -13.11593 -12.98297 -12.91814 -12.83532 -12.49253 -12.38547 -12.21248 -11.71972 -11.68248 -11.37378 -11.07618 -10.94457 -10.80586 -10.67450 -10.49273 -10.35839 -10.34906 -10.00500 -9.94811 -9.64662 -9.15791 -8.83505 -8.80622 -6.88956 -5.73518 -3.01939 0.87721 1.94929 2.24761 2.42225 2.58490 3.35844 3.47267 3.51210 3.52568 3.81444 4.18931 4.26294 4.40630 4.47201 4.51299 4.57380 4.60623 4.64915 4.66794 4.68124 4.81577 4.88762 4.93202 5.03643 5.08094 5.20753 5.35296 5.41119 5.52712 5.59020 5.61246 5.65204 5.77044 5.79978 5.85377 5.90629 6.02281 6.08009 6.25007 6.35498 6.38100 6.42347 6.86138 6.89976 7.29613 7.30530 7.73262 7.99149 8.45787 9.56706 10.14923 10.49420 11.49438 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.001586 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.715963 B =17647.484882 C =18813.453322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.037 4.037 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.185 3.815 6 C 0.162 3.838 7 O -0.357 6.357 8 C 0.052 3.948 9 C 0.527 3.473 10 O -0.515 6.515 11 N -0.619 5.619 12 C 0.097 3.903 13 C -0.128 4.128 14 C -0.094 4.094 15 H 0.086 0.914 16 C -0.115 4.115 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.112 3.888 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.187 0.813 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.074 0.926 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.657 8.703 -30.717 35.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.185 4.185 4 N -0.188 5.188 5 C -0.021 4.021 6 C 0.085 3.915 7 O -0.274 6.274 8 C -0.028 4.028 9 C 0.314 3.686 10 O -0.390 6.390 11 N -0.356 5.356 12 C -0.026 4.026 13 C -0.166 4.166 14 C -0.114 4.114 15 H 0.105 0.895 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.010 4.010 28 O -0.080 6.080 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.777 9.369 -29.961 35.134 hybrid contribution -0.412 -0.597 0.710 1.015 sum -16.190 8.771 -29.251 34.564 Atomic orbital electron populations 1.20330 0.83668 1.04611 1.04112 1.23603 0.95225 0.84480 1.05782 1.23122 0.87547 1.00607 1.07174 1.70418 1.23368 1.09028 1.15941 1.25474 0.83886 0.89945 1.02802 1.20472 0.89152 0.96474 0.85443 1.88084 1.45588 1.69725 1.24037 1.22224 0.89417 0.95882 0.95287 1.19715 0.79897 0.78742 0.90261 1.90782 1.48367 1.48041 1.51780 1.48462 1.27910 1.50228 1.08955 1.22134 0.91423 0.96243 0.92817 1.22723 0.97790 1.00718 0.95392 1.22395 0.97339 0.96984 0.94637 0.89540 1.21688 0.97468 1.02335 0.93802 1.20684 0.92735 0.97475 0.86793 1.42351 1.05363 1.85975 1.04116 1.19211 0.92482 1.40101 0.85316 0.91242 1.24735 0.95333 1.02856 0.98102 1.69650 1.00402 1.56900 1.31408 0.86257 0.77293 0.78176 0.84417 1.21284 1.21673 1.21260 1.22489 0.99500 0.96787 0.82212 1.84394 1.17689 1.36642 1.69311 0.90182 0.88965 0.89125 0.79633 0.89832 0.88344 0.89712 0.89596 0.91308 0.91299 0.89779 0.90078 0.91237 0.91531 0.96288 0.96450 0.78332 0.93511 0.90782 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.43 36.01 0.38 0.09 16 2 C -0.04 -0.32 7.39 -35.69 -0.26 -0.58 16 3 C -0.05 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.46 -5.43 11.29 -11.10 -0.13 -5.56 16 5 C 0.19 2.01 7.97 -12.94 -0.10 1.91 16 6 C 0.16 1.26 6.56 36.01 0.24 1.50 16 7 O -0.36 -4.11 9.86 -55.14 -0.54 -4.65 16 8 C 0.05 0.44 5.61 36.01 0.20 0.64 16 9 C 0.53 6.90 7.93 -10.98 -0.09 6.81 16 10 O -0.52 -9.51 16.75 -14.35 -0.24 -9.75 16 11 N -0.62 -6.99 3.32 -170.37 -0.57 -7.56 16 12 C 0.10 0.70 6.48 -3.06 -0.02 0.68 16 13 C -0.13 -1.06 6.41 -24.89 -0.16 -1.22 16 14 C -0.09 -1.09 3.02 -88.35 -0.27 -1.35 16 15 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.11 -1.71 4.84 -26.73 -0.13 -1.84 16 17 C 0.15 3.02 6.16 -4.04 -0.02 2.99 16 18 N -0.73 -18.91 5.60 -59.91 -0.34 -19.25 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 23 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 C 0.11 1.46 5.86 -2.41 -0.01 1.45 16 28 O -0.19 -2.07 10.78 5.36 0.06 -2.01 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.19 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 43 H 0.02 0.40 7.75 -51.93 -0.40 -0.01 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 10.26 7.67 -40.82 -0.31 9.94 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 48 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -39.17 404.93 -8.50 -47.67 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.84 Total: 2.17 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.71 Total: 2.89 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.30 Total: -60.25 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.73 Total: -16.41 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.17 -8.50 -47.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717090772.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.129 kcal (2) G-P(sol) polarization free energy of solvation -39.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds