Wall clock time and date at job start Tue Mar 31 2020 19:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34328 * 126.44651 * 2 1 4 4 N 1.34477 * 107.67295 * 179.72582 * 3 2 1 5 5 C 1.30260 * 108.69507 * 0.41683 * 4 3 2 6 6 C 1.50701 * 125.61558 * 179.84061 * 5 4 3 7 7 O 1.42903 * 109.46878 * 89.69499 * 6 5 4 8 8 C 1.42899 * 113.99629 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47140 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00000 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00301 * 180.02562 * 9 8 7 12 12 C 1.47019 * 125.64472 * 0.02562 * 11 9 8 13 13 C 1.54332 * 107.26762 * 181.02496 * 12 11 9 14 14 C 1.55152 * 102.94038 * 22.20011 * 13 12 11 15 15 H 1.08999 * 111.00618 * 82.61145 * 14 13 12 16 16 C 1.53006 * 111.00298 * 206.41944 * 14 13 12 17 17 C 1.52997 * 109.47100 * 184.99924 * 16 14 13 18 18 N 1.46502 * 109.46949 * 180.02562 * 17 16 14 19 19 C 1.36935 * 120.00119 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00269 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99544 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00036 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47171 * 60.00068 * 23 21 19 25 25 H 1.48505 * 109.46897 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47198 * 300.00067 * 23 21 19 27 27 C 1.47419 * 125.64861 * 179.71564 * 11 9 8 28 28 O 1.33962 * 108.76467 * 359.58084 * 5 4 3 29 29 H 1.08997 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47166 * 300.01007 * 1 2 3 31 31 H 1.09001 * 109.46748 * 60.00088 * 1 2 3 32 32 H 1.08006 * 126.16596 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47060 * 209.69630 * 6 5 4 34 34 H 1.09001 * 109.47380 * 329.69717 * 6 5 4 35 35 H 1.09007 * 109.47484 * 299.99646 * 8 7 6 36 36 H 1.09004 * 109.47459 * 59.99983 * 8 7 6 37 37 H 1.08994 * 109.88637 * 300.44582 * 12 11 9 38 38 H 1.09005 * 109.88335 * 61.61808 * 12 11 9 39 39 H 1.09009 * 110.71550 * 140.56243 * 13 12 11 40 40 H 1.08996 * 110.71996 * 263.65131 * 13 12 11 41 41 H 1.09003 * 109.46894 * 305.00465 * 16 14 13 42 42 H 1.09004 * 109.46640 * 64.99978 * 16 14 13 43 43 H 1.08998 * 109.47241 * 299.99918 * 17 16 14 44 44 H 1.08990 * 109.47105 * 60.00553 * 17 16 14 45 45 H 0.97007 * 120.00026 * 359.97438 * 18 17 16 46 46 H 0.97003 * 119.99951 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36840 * 274.74262 * 27 11 9 48 48 H 1.09006 * 110.36927 * 37.06431 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6478 0.0061 5 6 3.5765 -0.6548 0.0009 6 6 4.8004 -1.5341 0.0015 7 8 5.1868 -1.8116 1.3490 8 6 6.3434 -2.6432 1.4624 9 6 6.6582 -2.8700 2.9185 10 8 5.9611 -2.3684 3.7749 11 7 7.7151 -3.6293 3.2693 12 6 8.6400 -4.2926 2.3386 13 6 9.6699 -5.0655 3.1893 14 6 8.9314 -5.2562 4.5404 15 1 8.2601 -6.1141 4.5011 16 6 9.9264 -5.3948 5.6945 17 6 9.1685 -5.7048 6.9868 18 7 10.1212 -5.8369 8.0919 19 6 9.6708 -6.1162 9.3545 20 1 8.6132 -6.2388 9.5358 21 6 10.5735 -6.2419 10.4016 22 7 11.8624 -6.0931 10.1805 23 14 9.9590 -6.6223 12.1240 24 1 9.2357 -7.9191 12.1164 25 1 11.1134 -6.7042 13.0546 26 1 9.0394 -5.5452 12.5706 27 6 8.1389 -3.9270 4.6495 28 8 2.3075 -1.0840 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9822 2.1113 -0.0004 33 1 4.5764 -2.4690 -0.5122 34 1 5.6149 -1.0234 -0.5122 35 1 6.1510 -3.6012 0.9792 36 1 7.1901 -2.1559 0.9788 37 1 8.0909 -4.9855 1.7011 38 1 9.1489 -3.5471 1.7274 39 1 9.8989 -6.0298 2.7354 40 1 10.5783 -4.4782 3.3227 41 1 10.6229 -6.2049 5.4783 42 1 10.4787 -4.4624 5.8118 43 1 8.4720 -4.8947 7.2029 44 1 8.6163 -6.6371 6.8694 45 1 11.0712 -5.7272 7.9291 46 1 12.4933 -6.1805 10.9122 47 1 8.7790 -3.1310 5.0298 48 1 7.2692 -4.0561 5.2939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717090772.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:23 Heat of formation + Delta-G solvation = -71.544495 kcal Electronic energy + Delta-G solvation = -27687.960818 eV Core-core repulsion = 23551.093203 eV Total energy + Delta-G solvation = -4136.867615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41915 -41.22521 -39.38544 -38.38935 -36.84934 -35.86778 -34.58755 -33.73916 -32.78176 -30.81722 -30.66523 -29.27763 -27.73790 -26.19487 -25.58446 -24.31593 -23.40952 -22.70814 -22.19440 -21.29845 -20.49063 -19.17024 -18.76210 -18.25541 -17.84435 -17.61070 -17.36221 -16.75530 -16.63204 -16.31450 -16.03750 -15.49944 -15.36345 -15.29820 -15.15345 -14.83226 -14.34815 -14.28027 -13.98795 -13.89399 -13.79819 -13.38473 -13.28698 -13.17014 -13.08319 -12.96514 -12.93043 -12.78826 -12.47482 -12.31321 -12.23360 -12.00267 -11.69619 -11.67081 -11.53573 -11.41329 -10.97206 -10.93141 -10.92808 -9.78488 -9.71821 -9.01903 -7.97471 -5.26361 0.21088 1.30504 1.45337 1.48677 1.49559 1.54893 1.61996 1.79819 2.54425 2.75229 3.17997 3.35718 3.43820 3.64939 3.71819 3.76466 3.80707 3.98600 4.05658 4.14427 4.16289 4.19224 4.23866 4.32939 4.38867 4.45721 4.50629 4.55807 4.60449 4.66087 4.66449 4.77269 4.86811 4.92249 4.97093 5.00191 5.12918 5.13359 5.19765 5.24079 5.29744 5.38126 5.46369 5.49325 5.81912 6.25538 6.46081 6.60510 7.06818 7.31565 8.07911 8.31687 9.25702 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.001586 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.715963 B =17647.484882 C =18813.453322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.491 5.491 5 C 0.165 3.835 6 C 0.161 3.839 7 O -0.401 6.401 8 C 0.058 3.942 9 C 0.515 3.485 10 O -0.588 6.588 11 N -0.615 5.615 12 C 0.093 3.907 13 C -0.120 4.120 14 C -0.085 4.085 15 H 0.090 0.910 16 C -0.100 4.100 17 C 0.147 3.853 18 N -0.747 5.747 19 C -0.253 4.253 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.276 1.276 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.108 3.892 28 O -0.210 6.210 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.209 0.791 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.009 0.991 44 H 0.019 0.981 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.060 0.940 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.017 7.869 -33.461 37.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.207 4.207 4 N -0.222 5.222 5 C -0.042 4.042 6 C 0.084 3.916 7 O -0.320 6.320 8 C -0.020 4.020 9 C 0.304 3.696 10 O -0.468 6.468 11 N -0.350 5.350 12 C -0.028 4.028 13 C -0.158 4.158 14 C -0.104 4.104 15 H 0.108 0.892 16 C -0.138 4.138 17 C 0.021 3.979 18 N -0.390 5.390 19 C -0.385 4.385 20 H 0.089 0.911 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.015 4.015 28 O -0.096 6.096 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.226 0.774 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.207 0.793 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.138 8.509 -32.770 37.506 hybrid contribution -0.354 -0.306 1.547 1.616 sum -16.492 8.204 -31.223 36.251 Atomic orbital electron populations 1.20559 0.80670 1.05420 1.05865 1.24431 0.96859 0.83805 1.04117 1.23606 0.87088 1.02081 1.07884 1.70387 1.24876 1.09991 1.16950 1.26204 0.84785 0.90273 1.02905 1.20829 0.88678 0.97864 0.84194 1.88015 1.46888 1.70665 1.26422 1.22379 0.89939 0.97940 0.91745 1.20748 0.79178 0.77633 0.92008 1.90743 1.50908 1.51028 1.54094 1.48562 1.28016 1.49643 1.08791 1.22487 0.90816 0.97319 0.92196 1.22743 0.97683 1.02372 0.92962 1.22247 0.96751 0.95962 0.95482 0.89162 1.21530 0.97703 1.02180 0.92419 1.20874 0.92332 0.96975 0.87735 1.42573 1.05816 1.85864 1.04735 1.19608 0.92687 1.39389 0.86843 0.91129 1.25564 0.95576 1.03403 1.01986 1.69799 1.01413 1.58228 1.32292 0.85213 0.76731 0.78246 0.79581 1.20233 1.21668 1.20752 1.22332 0.98198 0.97458 0.83491 1.84399 1.18107 1.37611 1.69527 0.89814 0.87674 0.86694 0.77405 0.86512 0.86092 0.85685 0.85967 0.88075 0.88353 0.87217 0.89835 0.90494 0.92026 0.97316 0.96310 0.79270 0.93866 0.92155 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.43 71.24 0.74 0.29 16 2 C -0.04 -0.64 7.39 24.79 0.18 -0.46 16 3 C -0.07 -1.26 11.80 83.39 0.98 -0.27 16 4 N -0.49 -11.79 11.29 -303.83 -3.43 -15.22 16 5 C 0.16 3.54 7.97 88.34 0.70 4.24 16 6 C 0.16 2.21 6.56 71.24 0.47 2.68 16 7 O -0.40 -8.82 9.86 -129.94 -1.28 -10.10 16 8 C 0.06 0.83 5.61 71.24 0.40 1.23 16 9 C 0.51 13.21 7.93 87.66 0.69 13.90 16 10 O -0.59 -22.90 16.75 16.00 0.27 -22.63 16 11 N -0.62 -13.03 3.32 -811.33 -2.70 -15.73 16 12 C 0.09 0.95 6.48 86.73 0.56 1.51 16 13 C -0.12 -1.54 6.41 31.78 0.20 -1.33 16 14 C -0.08 -1.85 3.02 -9.32 -0.03 -1.88 16 15 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 16 C -0.10 -2.95 4.84 30.60 0.15 -2.81 16 17 C 0.15 6.02 6.16 86.38 0.53 6.55 16 18 N -0.75 -39.29 5.60 -343.46 -1.92 -41.21 16 19 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 22 N -0.97 -60.02 13.06 21.65 0.28 -59.73 16 23 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 27 C 0.11 2.89 5.86 86.94 0.51 3.40 16 28 O -0.21 -4.44 10.78 -3.72 -0.04 -4.48 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.11 0.93 8.14 -2.38 -0.02 0.92 16 40 H 0.08 1.08 8.04 -2.39 -0.02 1.06 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.06 1.88 7.96 -2.39 -0.02 1.86 16 43 H 0.01 0.38 7.75 -2.39 -0.02 0.36 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.38 20.56 7.67 -92.70 -0.71 19.85 16 46 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 47 H 0.06 1.75 7.91 -2.39 -0.02 1.73 16 48 H 0.05 1.63 8.04 -2.38 -0.02 1.62 16 Total: -1.00 -91.16 404.93 0.86 -90.30 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.25 Total: 20.16 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 7.41 Total: 9.29 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -7.77 Total: -131.90 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.05 Total: -37.22 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -91.16 0.86 -90.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717090772.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.756 kcal (2) G-P(sol) polarization free energy of solvation -91.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds