Wall clock time and date at job start Tue Mar 31 2020 19:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34335 * 126.44380 * 2 1 4 4 N 1.34473 * 107.66684 * 179.72255 * 3 2 1 5 5 C 1.30258 * 108.70449 * 0.42637 * 4 3 2 6 6 C 1.50696 * 125.62189 * 179.83619 * 5 4 3 7 7 O 1.42898 * 109.46983 * 89.69121 * 6 5 4 8 8 C 1.42905 * 114.00017 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47167 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00097 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.47020 * 125.65281 * 359.95767 * 11 9 8 13 13 C 1.54316 * 107.27568 * 178.97789 * 12 11 9 14 14 C 1.55158 * 102.94139 * 337.80546 * 13 12 11 15 15 H 1.08998 * 111.00511 * 277.42784 * 14 13 12 16 16 C 1.52997 * 111.03856 * 153.58832 * 14 13 12 17 17 C 1.53000 * 109.47309 * 181.33193 * 16 14 13 18 18 N 1.46504 * 109.47503 * 180.02562 * 17 16 14 19 19 C 1.36936 * 119.99990 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99453 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00371 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99591 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47094 * 90.00262 * 23 21 19 25 25 H 1.48500 * 109.46969 * 210.00135 * 23 21 19 26 26 H 1.48498 * 109.47140 * 330.00031 * 23 21 19 27 27 C 1.47422 * 125.64527 * 180.02562 * 11 9 8 28 28 O 1.33970 * 108.75849 * 359.57218 * 5 4 3 29 29 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47367 * 300.00370 * 1 2 3 31 31 H 1.09004 * 109.47211 * 60.00088 * 1 2 3 32 32 H 1.08000 * 126.16517 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.47148 * 329.69334 * 6 5 4 34 34 H 1.08997 * 109.47506 * 209.68946 * 6 5 4 35 35 H 1.09004 * 109.47096 * 60.00009 * 8 7 6 36 36 H 1.09000 * 109.46936 * 299.99794 * 8 7 6 37 37 H 1.09000 * 109.88493 * 59.55540 * 12 11 9 38 38 H 1.09005 * 110.00581 * 298.46850 * 12 11 9 39 39 H 1.09003 * 110.72312 * 219.44382 * 13 12 11 40 40 H 1.08999 * 110.87697 * 96.23821 * 13 12 11 41 41 H 1.08994 * 109.47315 * 301.33056 * 16 14 13 42 42 H 1.09007 * 109.46954 * 61.33678 * 16 14 13 43 43 H 1.09003 * 109.46990 * 300.00329 * 17 16 14 44 44 H 1.08998 * 109.47099 * 59.99888 * 17 16 14 45 45 H 0.97001 * 119.99341 * 359.97438 * 18 17 16 46 46 H 0.97000 * 120.00347 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36873 * 85.25268 * 27 11 9 48 48 H 1.09005 * 110.36491 * 322.92676 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0062 5 6 3.5765 -0.6548 0.0008 6 6 4.8004 -1.5340 0.0013 7 8 5.1868 -1.8116 1.3487 8 6 6.3434 -2.6432 1.4621 9 6 6.6582 -2.8701 2.9183 10 8 5.9611 -2.3686 3.7747 11 7 7.7151 -3.6294 3.2689 12 6 8.6392 -4.2939 2.3383 13 6 9.7001 -5.0236 3.1888 14 6 9.6448 -4.2636 4.5403 15 1 10.2429 -3.3532 4.5014 16 6 10.0934 -5.1621 5.6945 17 6 9.9936 -4.3892 7.0112 18 7 10.4238 -5.2494 8.1163 19 6 10.4191 -4.7699 9.3990 20 1 10.0979 -3.7578 9.5960 21 6 10.8262 -5.5852 10.4461 22 7 11.2172 -6.8189 10.2060 23 14 10.8205 -4.9310 12.1958 24 1 9.5026 -5.2055 12.8226 25 1 11.8900 -5.6011 12.9783 26 1 11.0645 -3.4663 12.1773 27 6 8.1351 -3.9325 4.6491 28 8 2.3074 -1.0840 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.9821 2.1113 -0.0004 33 1 5.6149 -1.0232 -0.5124 34 1 4.5764 -2.4689 -0.5124 35 1 7.1901 -2.1559 0.9786 36 1 6.1509 -3.6011 0.9789 37 1 9.1209 -3.5520 1.7013 38 1 8.0971 -5.0133 1.7245 39 1 10.6872 -4.9326 2.7354 40 1 9.4349 -6.0720 3.3248 41 1 9.4520 -6.0422 5.7403 42 1 11.1257 -5.4728 5.5330 43 1 10.6350 -3.5091 6.9653 44 1 8.9614 -4.0785 7.1727 45 1 10.7112 -6.1588 7.9394 46 1 11.5020 -7.3885 10.9377 47 1 7.5849 -4.7915 5.0332 48 1 7.9823 -3.0650 5.2913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717090773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:28 Heat of formation + Delta-G solvation = -41.629770 kcal Electronic energy + Delta-G solvation = -27712.798824 eV Core-core repulsion = 23577.228409 eV Total energy + Delta-G solvation = -4135.570415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.73630 -40.31685 -38.60263 -37.43223 -35.14617 -35.13842 -33.23084 -33.02927 -31.15106 -30.18907 -29.56495 -28.34140 -26.56078 -25.54117 -24.10785 -23.06827 -22.73759 -21.52821 -21.29923 -20.21261 -19.60939 -18.03428 -17.54341 -17.20249 -17.09685 -16.76614 -16.54063 -15.91690 -15.65001 -15.13425 -14.69903 -14.58503 -14.52928 -13.98484 -13.77519 -13.61058 -13.57431 -13.34250 -13.12925 -12.97557 -12.91103 -12.80750 -12.54793 -12.34233 -12.22481 -11.71938 -11.68725 -11.38249 -11.07988 -10.94126 -10.81471 -10.66869 -10.48303 -10.35374 -10.34110 -9.98568 -9.94170 -9.65009 -9.15508 -8.83723 -8.80157 -6.88855 -5.73677 -3.02037 0.87940 1.95204 2.25032 2.42755 2.58844 3.36128 3.46757 3.51820 3.53471 3.81741 4.19263 4.26555 4.40803 4.47632 4.51128 4.57282 4.60911 4.65583 4.66631 4.68749 4.81434 4.88939 4.93414 5.04315 5.08293 5.21091 5.35846 5.41342 5.52581 5.58976 5.61474 5.65370 5.77391 5.80408 5.85663 5.90616 6.02598 6.09162 6.24296 6.35546 6.37869 6.42811 6.86190 6.90058 7.29899 7.31067 7.74015 7.99699 8.45622 9.56703 10.14815 10.49334 11.49353 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.001603 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.874809 B =17459.164415 C =18648.237562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.037 4.037 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.185 3.815 6 C 0.162 3.838 7 O -0.357 6.357 8 C 0.052 3.948 9 C 0.527 3.473 10 O -0.515 6.515 11 N -0.619 5.619 12 C 0.097 3.903 13 C -0.128 4.128 14 C -0.094 4.094 15 H 0.086 0.914 16 C -0.114 4.114 17 C 0.150 3.850 18 N -0.734 5.734 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.112 3.888 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.187 0.813 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.074 0.926 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.951 8.936 -30.856 35.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.184 4.184 4 N -0.187 5.187 5 C -0.021 4.021 6 C 0.085 3.915 7 O -0.274 6.274 8 C -0.028 4.028 9 C 0.314 3.686 10 O -0.389 6.389 11 N -0.355 5.355 12 C -0.026 4.026 13 C -0.166 4.166 14 C -0.114 4.114 15 H 0.104 0.896 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.010 4.010 28 O -0.080 6.080 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.983 9.747 -30.101 35.008 hybrid contribution -0.343 -0.441 0.725 0.915 sum -15.327 9.306 -29.377 34.417 Atomic orbital electron populations 1.20330 0.83671 1.04609 1.04112 1.23602 0.95224 0.84484 1.05783 1.23123 0.87544 1.00605 1.07173 1.70412 1.23373 1.09031 1.15931 1.25474 0.83882 0.89942 1.02808 1.20469 0.89153 0.96468 0.85447 1.88084 1.45589 1.69726 1.24035 1.22225 0.89415 0.95873 0.95293 1.19711 0.80012 0.78635 0.90257 1.90783 1.48189 1.48198 1.51774 1.48460 1.28084 1.50050 1.08950 1.22119 0.91355 0.96317 0.92811 1.22718 0.98525 0.99985 0.95381 1.22356 0.94854 0.99524 0.94655 0.89594 1.21682 1.01703 0.98168 0.93702 1.20692 0.97036 0.93415 0.86605 1.42359 1.79412 1.13733 1.02307 1.19258 1.36600 0.97199 0.83939 0.91172 1.24735 1.02197 0.96124 0.98004 1.69657 1.50857 1.06882 1.30975 0.86185 0.77208 0.77903 0.84894 1.21720 1.21770 1.20757 1.22440 0.94501 1.01856 0.82183 1.84395 1.17693 1.36642 1.69313 0.90186 0.88964 0.89125 0.79633 0.88341 0.89841 0.89585 0.89731 0.91303 0.91325 0.89778 0.90081 0.91563 0.91235 0.96417 0.96239 0.78343 0.93568 0.90789 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.00 0.38 0.09 16 2 C -0.04 -0.32 7.39 -35.69 -0.26 -0.58 16 3 C -0.05 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.46 -5.44 11.29 -11.10 -0.13 -5.57 16 5 C 0.19 2.02 7.97 -12.95 -0.10 1.91 16 6 C 0.16 1.27 6.56 36.00 0.24 1.50 16 7 O -0.36 -4.12 9.86 -55.14 -0.54 -4.66 16 8 C 0.05 0.44 5.61 36.01 0.20 0.64 16 9 C 0.53 6.93 7.93 -10.98 -0.09 6.84 16 10 O -0.52 -9.54 16.75 -14.35 -0.24 -9.78 16 11 N -0.62 -7.02 3.33 -170.51 -0.57 -7.59 16 12 C 0.10 0.71 6.49 -3.07 -0.02 0.69 16 13 C -0.13 -1.05 6.42 -24.90 -0.16 -1.21 16 14 C -0.09 -1.09 3.07 -88.46 -0.27 -1.36 16 15 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 16 C -0.11 -1.71 4.85 -26.73 -0.13 -1.84 16 17 C 0.15 3.01 6.11 -4.04 -0.02 2.99 16 18 N -0.73 -18.92 5.60 -59.91 -0.34 -19.26 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 23 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.11 1.47 5.57 -2.52 -0.01 1.46 16 28 O -0.19 -2.07 10.78 5.35 0.06 -2.02 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.19 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 41 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.41 7.45 -51.93 -0.39 0.02 16 45 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 48 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16 LS Contribution 404.50 15.07 6.10 6.10 Total: -1.00 -39.23 404.50 -8.51 -47.73 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.83 Total: 2.15 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.72 Total: 2.94 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.30 Total: -60.32 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.73 Total: -16.46 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.23 -8.51 -47.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717090773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.101 kcal (2) G-P(sol) polarization free energy of solvation -39.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds