Wall clock time and date at job start Tue Mar 31 2020 19:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34335 * 126.44380 * 2 1 4 4 N 1.34473 * 107.66684 * 179.72255 * 3 2 1 5 5 C 1.30258 * 108.70449 * 0.42637 * 4 3 2 6 6 C 1.50696 * 125.62189 * 179.83619 * 5 4 3 7 7 O 1.42898 * 109.46983 * 89.69121 * 6 5 4 8 8 C 1.42905 * 114.00017 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47167 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00097 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.47020 * 125.65281 * 359.95767 * 11 9 8 13 13 C 1.54316 * 107.27568 * 178.97789 * 12 11 9 14 14 C 1.55158 * 102.94139 * 337.80546 * 13 12 11 15 15 H 1.08998 * 111.00511 * 277.42784 * 14 13 12 16 16 C 1.52997 * 111.03856 * 153.58832 * 14 13 12 17 17 C 1.53000 * 109.47309 * 181.33193 * 16 14 13 18 18 N 1.46504 * 109.47503 * 180.02562 * 17 16 14 19 19 C 1.36936 * 119.99990 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99453 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00371 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99591 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47094 * 90.00262 * 23 21 19 25 25 H 1.48500 * 109.46969 * 210.00135 * 23 21 19 26 26 H 1.48498 * 109.47140 * 330.00031 * 23 21 19 27 27 C 1.47422 * 125.64527 * 180.02562 * 11 9 8 28 28 O 1.33970 * 108.75849 * 359.57218 * 5 4 3 29 29 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47367 * 300.00370 * 1 2 3 31 31 H 1.09004 * 109.47211 * 60.00088 * 1 2 3 32 32 H 1.08000 * 126.16517 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.47148 * 329.69334 * 6 5 4 34 34 H 1.08997 * 109.47506 * 209.68946 * 6 5 4 35 35 H 1.09004 * 109.47096 * 60.00009 * 8 7 6 36 36 H 1.09000 * 109.46936 * 299.99794 * 8 7 6 37 37 H 1.09000 * 109.88493 * 59.55540 * 12 11 9 38 38 H 1.09005 * 110.00581 * 298.46850 * 12 11 9 39 39 H 1.09003 * 110.72312 * 219.44382 * 13 12 11 40 40 H 1.08999 * 110.87697 * 96.23821 * 13 12 11 41 41 H 1.08994 * 109.47315 * 301.33056 * 16 14 13 42 42 H 1.09007 * 109.46954 * 61.33678 * 16 14 13 43 43 H 1.09003 * 109.46990 * 300.00329 * 17 16 14 44 44 H 1.08998 * 109.47099 * 59.99888 * 17 16 14 45 45 H 0.97001 * 119.99341 * 359.97438 * 18 17 16 46 46 H 0.97000 * 120.00347 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36873 * 85.25268 * 27 11 9 48 48 H 1.09005 * 110.36491 * 322.92676 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0062 5 6 3.5765 -0.6548 0.0008 6 6 4.8004 -1.5340 0.0013 7 8 5.1868 -1.8116 1.3487 8 6 6.3434 -2.6432 1.4621 9 6 6.6582 -2.8701 2.9183 10 8 5.9611 -2.3686 3.7747 11 7 7.7151 -3.6294 3.2689 12 6 8.6392 -4.2939 2.3383 13 6 9.7001 -5.0236 3.1888 14 6 9.6448 -4.2636 4.5403 15 1 10.2429 -3.3532 4.5014 16 6 10.0934 -5.1621 5.6945 17 6 9.9936 -4.3892 7.0112 18 7 10.4238 -5.2494 8.1163 19 6 10.4191 -4.7699 9.3990 20 1 10.0979 -3.7578 9.5960 21 6 10.8262 -5.5852 10.4461 22 7 11.2172 -6.8189 10.2060 23 14 10.8205 -4.9310 12.1958 24 1 9.5026 -5.2055 12.8226 25 1 11.8900 -5.6011 12.9783 26 1 11.0645 -3.4663 12.1773 27 6 8.1351 -3.9325 4.6491 28 8 2.3074 -1.0840 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.9821 2.1113 -0.0004 33 1 5.6149 -1.0232 -0.5124 34 1 4.5764 -2.4689 -0.5124 35 1 7.1901 -2.1559 0.9786 36 1 6.1509 -3.6011 0.9789 37 1 9.1209 -3.5520 1.7013 38 1 8.0971 -5.0133 1.7245 39 1 10.6872 -4.9326 2.7354 40 1 9.4349 -6.0720 3.3248 41 1 9.4520 -6.0422 5.7403 42 1 11.1257 -5.4728 5.5330 43 1 10.6350 -3.5091 6.9653 44 1 8.9614 -4.0785 7.1727 45 1 10.7112 -6.1588 7.9394 46 1 11.5020 -7.3885 10.9377 47 1 7.5849 -4.7915 5.0332 48 1 7.9823 -3.0650 5.2913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717090773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:27 Heat of formation + Delta-G solvation = -71.722855 kcal Electronic energy + Delta-G solvation = -27714.103758 eV Core-core repulsion = 23577.228409 eV Total energy + Delta-G solvation = -4136.875349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41854 -41.22966 -39.39401 -38.39390 -36.85034 -35.86782 -34.59404 -33.73907 -32.78316 -30.81674 -30.67592 -29.26862 -27.72787 -26.19864 -25.59786 -24.34925 -23.40922 -22.71315 -22.19433 -21.26965 -20.48198 -19.17402 -18.75752 -18.24266 -17.92919 -17.60989 -17.25718 -16.77099 -16.64155 -16.46278 -15.95245 -15.47892 -15.39847 -15.21618 -15.15629 -14.88875 -14.37066 -14.24368 -13.99930 -13.89556 -13.78299 -13.37874 -13.31512 -13.19004 -13.04308 -12.98229 -12.94109 -12.82755 -12.47480 -12.31168 -12.19013 -12.00663 -11.70287 -11.67009 -11.52810 -11.41522 -10.97126 -10.94668 -10.92806 -9.78444 -9.71686 -9.02223 -7.98070 -5.26865 0.21061 1.30519 1.45100 1.47032 1.49638 1.55566 1.62037 1.79816 2.53852 2.75242 3.18033 3.35265 3.43710 3.65037 3.71633 3.76270 3.81130 3.98618 4.05797 4.13669 4.16790 4.19131 4.23873 4.33016 4.39172 4.45749 4.50161 4.55917 4.60448 4.66030 4.66571 4.76856 4.86554 4.92286 4.97072 4.99797 5.12892 5.13404 5.19916 5.24110 5.30000 5.37603 5.46476 5.48901 5.81979 6.25206 6.46210 6.60541 7.06919 7.31250 8.07348 8.31358 9.25293 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.001603 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.874809 B =17459.164415 C =18648.237562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.491 5.491 5 C 0.164 3.836 6 C 0.161 3.839 7 O -0.401 6.401 8 C 0.058 3.942 9 C 0.515 3.485 10 O -0.588 6.588 11 N -0.615 5.615 12 C 0.093 3.907 13 C -0.119 4.119 14 C -0.085 4.085 15 H 0.089 0.911 16 C -0.100 4.100 17 C 0.147 3.853 18 N -0.747 5.747 19 C -0.252 4.252 20 H 0.070 0.930 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.272 1.272 27 C 0.108 3.892 28 O -0.210 6.210 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.209 0.791 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.017 0.983 44 H 0.010 0.990 45 H 0.376 0.624 46 H 0.253 0.747 47 H 0.060 0.940 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 8.864 -33.611 37.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.206 4.206 4 N -0.222 5.222 5 C -0.042 4.042 6 C 0.084 3.916 7 O -0.320 6.320 8 C -0.020 4.020 9 C 0.304 3.696 10 O -0.468 6.468 11 N -0.350 5.350 12 C -0.028 4.028 13 C -0.157 4.157 14 C -0.105 4.105 15 H 0.108 0.892 16 C -0.138 4.138 17 C 0.020 3.980 18 N -0.390 5.390 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.197 1.197 27 C -0.014 4.014 28 O -0.097 6.097 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.226 0.774 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.035 0.965 44 H 0.028 0.972 45 H 0.208 0.792 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.779 9.679 -32.919 37.360 hybrid contribution -0.448 -0.380 1.565 1.672 sum -15.227 9.299 -31.354 36.075 Atomic orbital electron populations 1.20559 0.80675 1.05417 1.05866 1.24431 0.96858 0.83811 1.04121 1.23606 0.87085 1.02078 1.07879 1.70382 1.24878 1.09989 1.16939 1.26205 0.84781 0.90272 1.02913 1.20827 0.88685 0.97857 0.84195 1.88015 1.46893 1.70663 1.26428 1.22380 0.89953 0.97927 0.91731 1.20750 0.79273 0.77541 0.92013 1.90743 1.50733 1.51200 1.54097 1.48560 1.28166 1.49498 1.08779 1.22476 0.90642 0.97518 0.92193 1.22740 1.00420 0.99646 0.92903 1.22214 0.93188 0.99560 0.95553 0.89242 1.21524 1.02206 0.97927 0.92121 1.20878 0.95937 0.93425 0.87736 1.42574 1.79492 1.14024 1.02865 1.19635 1.35925 0.97293 0.85543 0.91184 1.25554 1.02484 0.96503 1.01966 1.69800 1.52019 1.07979 1.31919 0.85151 0.77003 0.77740 0.79936 1.21474 1.21612 1.19662 1.22276 0.95832 0.99866 0.83475 1.84400 1.18114 1.37615 1.69530 0.89821 0.87675 0.86688 0.77400 0.86069 0.86531 0.85910 0.85728 0.88183 0.88230 0.87202 0.89788 0.91855 0.90542 0.96492 0.97219 0.79241 0.93853 0.92191 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.23 0.74 0.29 16 2 C -0.04 -0.65 7.39 24.79 0.18 -0.47 16 3 C -0.07 -1.26 11.80 83.40 0.98 -0.28 16 4 N -0.49 -11.81 11.29 -303.83 -3.43 -15.24 16 5 C 0.16 3.55 7.97 88.34 0.70 4.25 16 6 C 0.16 2.22 6.56 71.23 0.47 2.69 16 7 O -0.40 -8.85 9.86 -129.94 -1.28 -10.13 16 8 C 0.06 0.83 5.61 71.24 0.40 1.23 16 9 C 0.51 13.27 7.93 87.66 0.69 13.96 16 10 O -0.59 -23.00 16.75 16.01 0.27 -22.73 16 11 N -0.62 -13.11 3.33 -811.75 -2.70 -15.81 16 12 C 0.09 0.95 6.49 86.73 0.56 1.52 16 13 C -0.12 -1.53 6.42 31.78 0.20 -1.32 16 14 C -0.09 -1.88 3.07 -9.39 -0.03 -1.91 16 15 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 16 C -0.10 -2.94 4.85 30.59 0.15 -2.79 16 17 C 0.15 6.02 6.11 86.38 0.53 6.55 16 18 N -0.75 -39.32 5.60 -343.44 -1.92 -41.24 16 19 C -0.25 -14.73 9.99 84.03 0.84 -13.89 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.97 -60.00 13.06 21.65 0.28 -59.71 16 23 Si 0.97 47.47 29.55 68.60 2.03 49.50 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 27 C 0.11 2.92 5.57 86.87 0.48 3.41 16 28 O -0.21 -4.46 10.78 -3.77 -0.04 -4.50 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 41 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 42 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.01 0.42 7.45 -2.39 -0.02 0.41 16 45 H 0.38 20.55 7.67 -92.71 -0.71 19.84 16 46 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 47 H 0.06 1.75 8.00 -2.39 -0.02 1.73 16 48 H 0.05 1.64 7.96 -2.38 -0.02 1.62 16 Total: -1.00 -91.34 404.50 0.83 -90.51 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.25 Total: 19.94 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 7.38 Total: 9.42 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -7.77 Total: -132.00 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.05 Total: -37.37 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -91.34 0.83 -90.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717090773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.789 kcal (2) G-P(sol) polarization free energy of solvation -91.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds