Wall clock time and date at job start Tue Mar 31 2020 21:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46762 * 2 1 4 4 N 1.46499 * 109.45965 * 298.52142 * 3 2 1 5 5 C 1.36940 * 120.00126 * 304.54439 * 4 3 2 6 6 H 1.07999 * 119.99699 * 354.94602 * 5 4 3 7 7 C 1.38814 * 119.99733 * 174.94562 * 5 4 3 8 8 N 1.31614 * 120.00298 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99645 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47034 * 89.99975 * 9 7 5 11 11 H 1.48495 * 109.47368 * 209.99888 * 9 7 5 12 12 H 1.48502 * 109.47302 * 330.00292 * 9 7 5 13 13 C 1.53043 * 109.45816 * 178.55507 * 3 2 1 14 14 C 1.53193 * 109.31515 * 178.59930 * 13 3 2 15 15 N 1.46932 * 108.76297 * 54.65079 * 14 13 3 16 16 C 1.34774 * 120.62933 * 126.41030 * 15 14 13 17 17 O 1.21282 * 119.99976 * 5.61344 * 16 15 14 18 18 C 1.50700 * 120.00080 * 185.61339 * 16 15 14 19 19 C 1.53247 * 109.61949 * 291.97702 * 18 16 15 20 20 C 1.50626 * 109.14558 * 184.86449 * 19 18 16 21 21 O 1.21228 * 119.26632 * 208.91331 * 20 19 18 22 22 N 1.34145 * 121.37059 * 28.73834 * 20 19 18 23 23 C 1.34132 * 122.58926 * 359.63041 * 22 20 19 24 24 O 1.21226 * 119.36124 * 180.54873 * 23 22 20 25 25 C 1.50587 * 121.28026 * 0.57060 * 23 22 20 26 26 C 1.46923 * 118.73953 * 306.38549 * 15 14 13 27 27 C 1.53035 * 109.46468 * 58.49575 * 3 2 1 28 28 H 1.08995 * 109.47547 * 294.84818 * 1 2 3 29 29 H 1.09004 * 109.47070 * 54.85510 * 1 2 3 30 30 H 1.09000 * 109.46764 * 174.84708 * 1 2 3 31 31 H 1.08999 * 109.46978 * 119.99423 * 2 1 3 32 32 H 1.08991 * 109.47397 * 239.99631 * 2 1 3 33 33 H 0.97005 * 119.99893 * 124.54482 * 4 3 2 34 34 H 0.97003 * 119.99978 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.49831 * 298.56175 * 13 3 2 36 36 H 1.09003 * 109.49982 * 58.65739 * 13 3 2 37 37 H 1.09004 * 109.59794 * 294.86735 * 14 13 3 38 38 H 1.08997 * 109.58828 * 174.42998 * 14 13 3 39 39 H 1.08995 * 109.61518 * 52.34503 * 18 16 15 40 40 H 1.09001 * 109.52174 * 304.56678 * 19 18 16 41 41 H 1.08992 * 109.51958 * 64.75852 * 19 18 16 42 42 H 0.97001 * 118.69706 * 179.61109 * 22 20 19 43 43 H 1.09009 * 109.52158 * 210.97429 * 25 23 22 44 44 H 1.09002 * 109.57709 * 90.82390 * 25 23 22 45 45 H 1.09001 * 109.58708 * 293.82204 * 26 15 14 46 46 H 1.09003 * 109.58395 * 173.40161 * 26 15 14 47 47 H 1.08993 * 109.50044 * 301.33828 * 27 3 2 48 48 H 1.09006 * 109.49465 * 61.43458 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5807 2.1225 -1.2137 5 6 1.8632 1.5921 -2.4442 6 1 2.4929 0.7183 -2.5239 7 6 1.3400 2.1775 -3.5890 8 7 0.5730 3.2426 -3.4917 9 14 1.7247 1.4536 -5.2674 10 1 0.6973 0.4397 -5.6165 11 1 1.7195 2.5344 -6.2857 12 1 3.0630 0.8109 -5.2345 13 6 3.5699 1.4424 0.0364 14 6 4.0777 2.8873 0.0010 15 7 3.4483 3.6365 1.0971 16 6 4.2004 4.3190 1.9829 17 8 5.3996 4.4036 1.8222 18 6 3.5514 4.9773 3.1731 19 6 2.6729 6.1411 2.7020 20 6 2.1252 6.8649 3.9041 21 8 1.0568 7.4313 3.8189 22 7 2.7935 6.8925 5.0669 23 6 3.9745 6.2794 5.2362 24 8 4.5230 6.3338 6.3158 25 6 4.6323 5.5253 4.1109 26 6 1.9833 3.6278 1.2087 27 6 1.4990 2.1746 1.2302 28 1 -0.3634 0.4318 0.9325 29 1 -0.3633 0.5916 -0.8404 30 1 -0.3633 -1.0235 -0.0923 31 1 1.8933 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.0766 2.9484 -1.1456 34 1 0.2072 3.6515 -4.2917 35 1 3.9121 0.9587 0.9514 36 1 3.9544 0.9005 -0.8278 37 1 3.8138 3.3443 -0.9528 38 1 5.1604 2.8973 0.1261 39 1 2.9397 4.2491 3.7056 40 1 3.2707 6.8309 2.1062 41 1 1.8507 5.7559 2.0990 42 1 2.4075 7.3750 5.8146 43 1 5.2148 4.6986 4.5180 44 1 5.2895 6.1957 3.5571 45 1 1.5486 4.1451 0.3534 46 1 1.6842 4.1264 2.1306 47 1 0.4094 2.1540 1.2159 48 1 1.8608 1.6839 2.1338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717240907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:31 Heat of formation + Delta-G solvation = -95.415786 kcal Electronic energy + Delta-G solvation = -31073.040383 eV Core-core repulsion = 26935.137632 eV Total energy + Delta-G solvation = -4137.902752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95146 -40.22257 -39.15542 -38.28693 -35.76874 -35.01602 -34.14610 -32.65743 -30.98750 -30.18663 -29.30436 -29.05483 -26.09424 -24.43120 -23.81812 -23.54814 -22.98277 -21.41982 -19.76816 -19.57871 -18.23768 -18.11775 -17.77346 -17.13562 -17.10907 -16.23686 -15.66749 -15.55162 -15.06342 -14.89480 -14.67727 -14.60639 -14.19923 -14.04697 -13.94574 -13.80752 -13.35743 -13.22379 -12.92616 -12.64627 -12.43888 -12.06133 -11.98178 -11.68911 -11.59695 -11.33905 -11.21904 -11.11455 -10.93146 -10.85024 -10.71649 -10.61421 -10.56177 -10.35997 -10.30188 -10.06839 -9.80307 -9.69914 -9.49010 -8.94814 -8.39937 -7.01886 -5.84038 -3.12368 1.13043 2.34852 2.39717 2.51229 3.02414 3.38337 3.44618 3.46164 3.57965 3.98225 4.09265 4.22691 4.52629 4.54762 4.69355 4.88843 4.96896 5.11389 5.19162 5.28848 5.36439 5.45753 5.48763 5.50934 5.59792 5.63544 5.70981 5.79440 5.89167 5.94969 6.06531 6.09074 6.18097 6.28436 6.40709 6.44383 6.50407 6.57976 6.69747 6.77745 6.85473 6.97622 7.00039 7.10691 7.44342 7.52256 7.66553 8.12943 8.34559 9.46619 10.01482 10.36951 11.38190 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003132 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.354572 B = 8938.514088 C = 9062.187457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.009 4.009 8 N -0.931 5.931 9 Si 0.900 3.100 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 C -0.136 4.136 14 C 0.121 3.879 15 N -0.592 5.592 16 C 0.520 3.480 17 O -0.543 6.543 18 C -0.114 4.114 19 C -0.146 4.146 20 C 0.530 3.470 21 O -0.495 6.495 22 N -0.676 5.676 23 C 0.529 3.471 24 O -0.501 6.501 25 C -0.122 4.122 26 C 0.099 3.901 27 C -0.134 4.134 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.412 0.588 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 2.464 14.922 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.111 3.889 4 N -0.354 5.354 5 C -0.362 4.362 6 H 0.087 0.913 7 C -0.205 4.205 8 N -0.579 5.579 9 Si 0.731 3.269 10 H -0.219 1.219 11 H -0.220 1.220 12 H -0.209 1.209 13 C -0.177 4.177 14 C 0.000 4.000 15 N -0.324 5.324 16 C 0.307 3.693 17 O -0.421 6.421 18 C -0.136 4.136 19 C -0.185 4.185 20 C 0.318 3.682 21 O -0.367 6.367 22 N -0.342 5.342 23 C 0.318 3.682 24 O -0.374 6.374 25 C -0.162 4.162 26 C -0.024 4.024 27 C -0.172 4.172 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.252 0.748 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.004 2.619 14.991 15.736 hybrid contribution -0.323 -0.026 -0.746 0.813 sum 3.681 2.593 14.246 14.940 Atomic orbital electron populations 1.21679 0.96159 1.00229 1.01838 1.21851 0.96265 0.97826 1.00190 1.19534 0.91085 0.91451 0.86879 1.42450 1.65754 1.27471 0.99771 1.19068 1.24170 1.09370 0.83622 0.91266 1.24671 1.00050 0.98241 0.97559 1.69632 1.37722 1.22625 1.27968 0.86309 0.77759 0.78006 0.84811 1.21890 1.21960 1.20859 1.22354 0.98926 0.95472 1.00939 1.21636 0.97155 0.91841 0.89354 1.48112 1.07087 1.48772 1.28422 1.19917 0.86978 0.79283 0.83151 1.90710 1.14528 1.61094 1.75732 1.21498 0.97525 0.98148 0.96382 1.22255 1.02655 0.97600 0.96009 1.20820 0.84041 0.79351 0.83950 1.90828 1.20578 1.42176 1.83133 1.44901 1.22190 1.51095 1.16026 1.20974 0.79622 0.77532 0.90097 1.90800 1.61544 1.58274 1.26773 1.21778 0.98165 1.02333 0.93930 1.22036 0.79422 0.98547 1.02373 1.22166 1.01607 0.94622 0.98803 0.94205 0.90602 0.94682 0.94182 0.91815 0.78238 0.93577 0.93396 0.90661 0.89401 0.90393 0.87060 0.86056 0.85123 0.74803 0.86045 0.85792 0.89582 0.90433 0.90097 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.29 37.16 0.35 -1.90 16 2 C -0.12 -1.94 4.78 -26.73 -0.13 -2.07 16 3 C 0.20 3.23 0.44 -131.78 -0.06 3.17 16 4 N -0.71 -14.46 3.38 -47.20 -0.16 -14.62 16 5 C -0.23 -5.50 8.66 -15.06 -0.13 -5.63 16 6 H 0.07 1.65 6.71 -52.49 -0.35 1.30 16 7 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 8 N -0.93 -25.55 13.06 55.49 0.72 -24.82 16 9 Si 0.90 21.01 29.55 -169.99 -5.02 15.99 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C -0.14 -2.11 4.77 -26.61 -0.13 -2.24 16 14 C 0.12 1.88 6.16 -3.71 -0.02 1.86 16 15 N -0.59 -7.66 2.97 -172.76 -0.51 -8.17 16 16 C 0.52 6.26 7.03 -10.99 -0.08 6.18 16 17 O -0.54 -8.23 15.34 5.56 0.09 -8.15 16 18 C -0.11 -0.93 1.80 -91.52 -0.16 -1.10 16 19 C -0.15 -1.13 4.93 -27.79 -0.14 -1.27 16 20 C 0.53 4.71 7.75 -11.30 -0.09 4.62 16 21 O -0.50 -6.11 17.87 5.60 0.10 -6.01 16 22 N -0.68 -5.34 5.09 -11.74 -0.06 -5.40 16 23 C 0.53 4.67 7.74 -11.33 -0.09 4.58 16 24 O -0.50 -6.07 17.88 5.60 0.10 -5.97 16 25 C -0.12 -0.97 4.78 -27.81 -0.13 -1.11 16 26 C 0.10 1.16 5.00 -3.71 -0.02 1.14 16 27 C -0.13 -1.71 4.62 -26.61 -0.12 -1.84 16 28 H 0.04 0.55 6.66 -51.93 -0.35 0.20 16 29 H 0.07 1.46 7.50 -51.93 -0.39 1.07 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.14 7.08 -51.93 -0.37 0.77 16 33 H 0.38 8.40 6.35 -40.82 -0.26 8.15 16 34 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.28 7.48 -51.93 -0.39 0.89 16 37 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16 38 H 0.08 1.23 7.04 -51.93 -0.37 0.86 16 39 H 0.11 0.75 7.56 -51.93 -0.39 0.35 16 40 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.13 1.03 5.40 -51.93 -0.28 0.75 16 42 H 0.41 2.92 8.79 -40.82 -0.36 2.56 16 43 H 0.12 0.98 8.14 -51.92 -0.42 0.55 16 44 H 0.12 0.97 7.88 -51.93 -0.41 0.56 16 45 H 0.09 1.18 6.85 -51.93 -0.36 0.83 16 46 H 0.08 0.67 4.37 -51.93 -0.23 0.44 16 47 H 0.08 1.04 6.44 -51.93 -0.33 0.71 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -30.54 370.72 -7.10 -37.64 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.90 Total: 9.83 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.05 Total: 4.09 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.01 Total: -53.01 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.29 Total: -20.12 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.54 -7.10 -37.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717240907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.772 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds