Wall clock time and date at job start Tue Mar 31 2020 21:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46762 * 2 1 4 4 N 1.46499 * 109.45965 * 298.52142 * 3 2 1 5 5 C 1.36940 * 120.00126 * 304.54439 * 4 3 2 6 6 H 1.07999 * 119.99699 * 354.94602 * 5 4 3 7 7 C 1.38814 * 119.99733 * 174.94562 * 5 4 3 8 8 N 1.31614 * 120.00298 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99645 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47034 * 89.99975 * 9 7 5 11 11 H 1.48495 * 109.47368 * 209.99888 * 9 7 5 12 12 H 1.48502 * 109.47302 * 330.00292 * 9 7 5 13 13 C 1.53043 * 109.45816 * 178.55507 * 3 2 1 14 14 C 1.53193 * 109.31515 * 178.59930 * 13 3 2 15 15 N 1.46932 * 108.76297 * 54.65079 * 14 13 3 16 16 C 1.34774 * 120.62933 * 126.41030 * 15 14 13 17 17 O 1.21282 * 119.99976 * 5.61344 * 16 15 14 18 18 C 1.50700 * 120.00080 * 185.61339 * 16 15 14 19 19 C 1.53247 * 109.61949 * 291.97702 * 18 16 15 20 20 C 1.50626 * 109.14558 * 184.86449 * 19 18 16 21 21 O 1.21228 * 119.26632 * 208.91331 * 20 19 18 22 22 N 1.34145 * 121.37059 * 28.73834 * 20 19 18 23 23 C 1.34132 * 122.58926 * 359.63041 * 22 20 19 24 24 O 1.21226 * 119.36124 * 180.54873 * 23 22 20 25 25 C 1.50587 * 121.28026 * 0.57060 * 23 22 20 26 26 C 1.46923 * 118.73953 * 306.38549 * 15 14 13 27 27 C 1.53035 * 109.46468 * 58.49575 * 3 2 1 28 28 H 1.08995 * 109.47547 * 294.84818 * 1 2 3 29 29 H 1.09004 * 109.47070 * 54.85510 * 1 2 3 30 30 H 1.09000 * 109.46764 * 174.84708 * 1 2 3 31 31 H 1.08999 * 109.46978 * 119.99423 * 2 1 3 32 32 H 1.08991 * 109.47397 * 239.99631 * 2 1 3 33 33 H 0.97005 * 119.99893 * 124.54482 * 4 3 2 34 34 H 0.97003 * 119.99978 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.49831 * 298.56175 * 13 3 2 36 36 H 1.09003 * 109.49982 * 58.65739 * 13 3 2 37 37 H 1.09004 * 109.59794 * 294.86735 * 14 13 3 38 38 H 1.08997 * 109.58828 * 174.42998 * 14 13 3 39 39 H 1.08995 * 109.61518 * 52.34503 * 18 16 15 40 40 H 1.09001 * 109.52174 * 304.56678 * 19 18 16 41 41 H 1.08992 * 109.51958 * 64.75852 * 19 18 16 42 42 H 0.97001 * 118.69706 * 179.61109 * 22 20 19 43 43 H 1.09009 * 109.52158 * 210.97429 * 25 23 22 44 44 H 1.09002 * 109.57709 * 90.82390 * 25 23 22 45 45 H 1.09001 * 109.58708 * 293.82204 * 26 15 14 46 46 H 1.09003 * 109.58395 * 173.40161 * 26 15 14 47 47 H 1.08993 * 109.50044 * 301.33828 * 27 3 2 48 48 H 1.09006 * 109.49465 * 61.43458 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5807 2.1225 -1.2137 5 6 1.8632 1.5921 -2.4442 6 1 2.4929 0.7183 -2.5239 7 6 1.3400 2.1775 -3.5890 8 7 0.5730 3.2426 -3.4917 9 14 1.7247 1.4536 -5.2674 10 1 0.6973 0.4397 -5.6165 11 1 1.7195 2.5344 -6.2857 12 1 3.0630 0.8109 -5.2345 13 6 3.5699 1.4424 0.0364 14 6 4.0777 2.8873 0.0010 15 7 3.4483 3.6365 1.0971 16 6 4.2004 4.3190 1.9829 17 8 5.3996 4.4036 1.8222 18 6 3.5514 4.9773 3.1731 19 6 2.6729 6.1411 2.7020 20 6 2.1252 6.8649 3.9041 21 8 1.0568 7.4313 3.8189 22 7 2.7935 6.8925 5.0669 23 6 3.9745 6.2794 5.2362 24 8 4.5230 6.3338 6.3158 25 6 4.6323 5.5253 4.1109 26 6 1.9833 3.6278 1.2087 27 6 1.4990 2.1746 1.2302 28 1 -0.3634 0.4318 0.9325 29 1 -0.3633 0.5916 -0.8404 30 1 -0.3633 -1.0235 -0.0923 31 1 1.8933 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.0766 2.9484 -1.1456 34 1 0.2072 3.6515 -4.2917 35 1 3.9121 0.9587 0.9514 36 1 3.9544 0.9005 -0.8278 37 1 3.8138 3.3443 -0.9528 38 1 5.1604 2.8973 0.1261 39 1 2.9397 4.2491 3.7056 40 1 3.2707 6.8309 2.1062 41 1 1.8507 5.7559 2.0990 42 1 2.4075 7.3750 5.8146 43 1 5.2148 4.6986 4.5180 44 1 5.2895 6.1957 3.5571 45 1 1.5486 4.1451 0.3534 46 1 1.6842 4.1264 2.1306 47 1 0.4094 2.1540 1.2159 48 1 1.8608 1.6839 2.1338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717240907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:30 Heat of formation + Delta-G solvation = -116.747374 kcal Electronic energy + Delta-G solvation = -31073.965390 eV Core-core repulsion = 26935.137632 eV Total energy + Delta-G solvation = -4138.827759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72688 -41.26899 -39.96952 -39.49086 -36.60725 -36.25032 -34.94141 -34.38151 -32.17086 -31.47915 -30.74937 -29.88780 -27.13507 -25.85249 -25.13935 -24.43488 -24.04698 -22.59419 -20.78064 -20.35706 -19.50792 -18.88474 -18.85668 -18.64341 -17.99413 -17.16908 -16.65896 -16.49590 -16.36463 -15.83692 -15.70132 -15.57027 -15.49397 -15.38212 -15.17057 -14.91354 -14.47666 -14.38455 -14.17186 -13.87346 -13.55047 -13.24397 -12.98017 -12.89266 -12.82905 -12.54872 -12.41089 -12.33334 -12.25131 -12.11409 -12.04165 -11.90399 -11.70283 -11.45616 -11.41200 -11.39580 -11.35990 -10.95830 -10.72277 -10.64478 -9.55925 -8.79412 -7.82020 -5.04641 0.39169 1.49131 1.52046 1.52178 1.56881 1.65133 1.69841 2.04573 2.64039 2.86908 3.18739 3.37525 3.51526 3.53438 3.83073 3.88761 3.95398 3.98076 4.17313 4.20866 4.31638 4.36294 4.49640 4.54509 4.60978 4.63445 4.75136 4.79127 4.82401 4.85772 4.88611 4.96419 5.00233 5.13540 5.19069 5.24132 5.34450 5.43616 5.44433 5.59373 5.67996 5.73158 5.73987 5.79724 6.26760 6.41991 6.50664 6.74493 7.13016 7.50266 8.27994 8.50707 9.41098 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003132 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.354572 B = 8938.514088 C = 9062.187457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.193 3.807 4 N -0.714 5.714 5 C -0.202 4.202 6 H 0.068 0.932 7 C -0.070 4.070 8 N -0.964 5.964 9 Si 0.945 3.055 10 H -0.296 1.296 11 H -0.305 1.305 12 H -0.276 1.276 13 C -0.129 4.129 14 C 0.130 3.870 15 N -0.593 5.593 16 C 0.524 3.476 17 O -0.573 6.573 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.544 3.456 21 O -0.528 6.528 22 N -0.668 5.668 23 C 0.543 3.457 24 O -0.532 6.532 25 C -0.117 4.117 26 C 0.101 3.899 27 C -0.129 4.129 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.374 0.626 34 H 0.244 0.756 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.417 0.583 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.063 0.937 46 H 0.118 0.882 47 H 0.084 0.916 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 1.788 17.517 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.103 3.897 4 N -0.355 5.355 5 C -0.335 4.335 6 H 0.086 0.914 7 C -0.262 4.262 8 N -0.616 5.616 9 Si 0.778 3.222 10 H -0.224 1.224 11 H -0.232 1.232 12 H -0.201 1.201 13 C -0.169 4.169 14 C 0.007 3.993 15 N -0.324 5.324 16 C 0.312 3.688 17 O -0.453 6.453 18 C -0.122 4.122 19 C -0.182 4.182 20 C 0.334 3.666 21 O -0.402 6.402 22 N -0.333 5.333 23 C 0.333 3.667 24 O -0.407 6.407 25 C -0.156 4.156 26 C -0.021 4.021 27 C -0.167 4.167 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.208 0.792 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.258 0.742 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.135 0.865 47 H 0.103 0.897 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.223 1.907 17.625 18.224 hybrid contribution -0.302 0.145 -1.470 1.507 sum 3.921 2.051 16.156 16.751 Atomic orbital electron populations 1.21594 0.95991 1.00286 1.01380 1.21824 0.96321 0.97392 1.00364 1.19841 0.91385 0.91818 0.86614 1.42553 1.65313 1.27323 1.00291 1.19288 1.21425 1.07834 0.84929 0.91368 1.25171 1.01673 0.99376 0.99966 1.69747 1.40012 1.24298 1.27593 0.85542 0.77615 0.76846 0.82210 1.22438 1.23249 1.20098 1.22249 0.98238 0.95282 1.01124 1.21292 0.97080 0.92010 0.88910 1.48087 1.07637 1.48769 1.27924 1.20438 0.86508 0.78376 0.83445 1.90708 1.16130 1.61991 1.76505 1.21445 0.97592 0.98504 0.94648 1.22250 1.02716 0.97586 0.95608 1.20836 0.83244 0.78503 0.84020 1.90834 1.22099 1.43745 1.83536 1.44808 1.21815 1.50626 1.16040 1.20983 0.79260 0.76846 0.89581 1.90805 1.62309 1.59517 1.28061 1.21746 0.98027 1.02451 0.93422 1.22094 0.78367 0.98221 1.03426 1.22147 1.01809 0.94882 0.97884 0.91728 0.94594 0.93738 0.91163 0.94451 0.79213 0.94698 0.91055 0.92810 0.93044 0.90826 0.84335 0.85208 0.84778 0.74231 0.85636 0.85497 0.91872 0.86471 0.89745 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.29 71.98 0.67 -3.35 16 2 C -0.12 -3.56 4.78 30.59 0.15 -3.41 16 3 C 0.19 5.86 0.44 3.63 0.00 5.86 16 4 N -0.71 -29.08 3.38 -303.23 -1.02 -30.10 16 5 C -0.20 -9.77 8.66 84.03 0.73 -9.04 16 6 H 0.07 3.28 6.71 -2.91 -0.02 3.26 16 7 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 8 N -0.96 -54.59 13.06 21.65 0.28 -54.31 16 9 Si 0.95 44.30 29.55 68.60 2.03 46.33 16 10 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 11 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 C -0.13 -3.79 4.77 30.67 0.15 -3.64 16 14 C 0.13 3.95 6.16 86.36 0.53 4.48 16 15 N -0.59 -14.06 2.97 -818.89 -2.43 -16.49 16 16 C 0.52 11.22 7.03 87.66 0.62 11.83 16 17 O -0.57 -16.34 15.34 -3.04 -0.05 -16.39 16 18 C -0.10 -1.28 1.80 -11.38 -0.02 -1.30 16 19 C -0.14 -1.78 4.93 29.91 0.15 -1.63 16 20 C 0.54 8.20 7.75 87.73 0.68 8.88 16 21 O -0.53 -11.94 17.87 -2.87 -0.05 -11.99 16 22 N -0.67 -8.83 5.09 -428.60 -2.18 -11.01 16 23 C 0.54 8.16 7.74 87.72 0.68 8.83 16 24 O -0.53 -11.80 17.88 -2.86 -0.05 -11.85 16 25 C -0.12 -1.51 4.78 29.89 0.14 -1.37 16 26 C 0.10 2.09 5.00 86.36 0.43 2.52 16 27 C -0.13 -2.87 4.62 30.67 0.14 -2.72 16 28 H 0.06 1.58 6.66 -2.39 -0.02 1.57 16 29 H 0.03 1.35 7.50 -2.38 -0.02 1.33 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.29 7.08 -2.39 -0.02 1.28 16 33 H 0.37 16.65 6.35 -92.70 -0.59 16.06 16 34 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.05 1.80 7.48 -2.39 -0.02 1.78 16 37 H 0.05 1.94 7.74 -2.38 -0.02 1.92 16 38 H 0.07 2.29 7.04 -2.39 -0.02 2.28 16 39 H 0.14 1.12 7.56 -2.39 -0.02 1.10 16 40 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.13 1.68 5.40 -2.39 -0.01 1.66 16 42 H 0.42 5.01 8.79 -92.71 -0.81 4.20 16 43 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.13 1.66 7.88 -2.39 -0.02 1.64 16 45 H 0.06 1.66 6.85 -2.39 -0.02 1.64 16 46 H 0.12 1.51 4.37 -2.39 -0.01 1.50 16 47 H 0.08 1.88 6.44 -2.39 -0.02 1.86 16 48 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -68.26 370.72 1.64 -66.61 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.38 Total: 26.48 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.51 Total: 12.72 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -5.36 Total: -111.91 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.15 Total: -40.23 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -68.26 1.64 -66.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717240907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.133 kcal (2) G-P(sol) polarization free energy of solvation -68.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds