Wall clock time and date at job start Tue Mar 31 2020 21:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47007 * 2 1 4 4 N 1.46499 * 109.46277 * 54.63780 * 3 2 1 5 5 C 1.36935 * 119.99727 * 64.78742 * 4 3 2 6 6 H 1.08002 * 120.00184 * 354.79091 * 5 4 3 7 7 C 1.38811 * 120.00076 * 174.78308 * 5 4 3 8 8 N 1.31618 * 120.00360 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99674 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47287 * 89.99966 * 9 7 5 11 11 H 1.48504 * 109.47088 * 209.99302 * 9 7 5 12 12 H 1.48499 * 109.47464 * 329.99673 * 9 7 5 13 13 C 1.53040 * 109.45737 * 294.66568 * 3 2 1 14 14 C 1.53202 * 109.31243 * 178.61653 * 13 3 2 15 15 N 1.46921 * 108.77261 * 54.63573 * 14 13 3 16 16 C 1.34771 * 120.63024 * 126.37499 * 15 14 13 17 17 O 1.21280 * 119.99952 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00135 * 179.97438 * 16 15 14 19 19 C 1.52995 * 109.47106 * 179.97438 * 18 16 15 20 20 H 1.09005 * 110.66270 * 307.92838 * 19 18 16 21 21 C 1.54229 * 110.60443 * 184.99982 * 19 18 16 22 22 C 1.51321 * 103.55185 * 241.47642 * 21 19 18 23 23 O 1.21232 * 125.39207 * 179.97438 * 22 21 19 24 24 N 1.33875 * 109.20579 * 0.02562 * 22 21 19 25 25 C 1.33870 * 114.47896 * 359.97438 * 24 22 21 26 26 O 1.21226 * 125.39798 * 180.02562 * 25 24 22 27 27 C 1.46928 * 118.74057 * 306.63964 * 15 14 13 28 28 C 1.52766 * 109.00537 * 53.31576 * 27 15 14 29 29 H 1.09003 * 109.47017 * 305.19680 * 1 2 3 30 30 H 1.08997 * 109.47454 * 65.19769 * 1 2 3 31 31 H 1.08999 * 109.47160 * 185.19617 * 1 2 3 32 32 H 1.09003 * 109.46958 * 239.99848 * 2 1 3 33 33 H 1.09000 * 109.46998 * 119.99505 * 2 1 3 34 34 H 0.96998 * 120.00061 * 244.79337 * 4 3 2 35 35 H 0.96998 * 120.00361 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.49668 * 58.66608 * 13 3 2 37 37 H 1.08994 * 109.50076 * 298.56471 * 13 3 2 38 38 H 1.08999 * 109.58235 * 294.84625 * 14 13 3 39 39 H 1.08998 * 109.70149 * 174.49368 * 14 13 3 40 40 H 1.08998 * 109.47405 * 59.99398 * 18 16 15 41 41 H 1.09003 * 109.46868 * 299.99474 * 18 16 15 42 42 H 1.08998 * 110.60884 * 359.97438 * 21 19 18 43 43 H 1.08997 * 110.60906 * 122.80817 * 21 19 18 44 44 H 0.97006 * 122.75683 * 179.97438 * 24 22 21 45 45 H 1.08992 * 109.58816 * 173.14859 * 27 15 14 46 46 H 1.08995 * 109.58906 * 293.57887 * 27 15 14 47 47 H 1.09000 * 109.56449 * 185.55222 * 28 27 15 48 48 H 1.08991 * 109.36199 * 65.49649 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4490 2.1692 1.1264 5 6 1.7472 1.8005 2.4111 6 1 2.3498 0.9233 2.5951 7 6 1.2750 2.5543 3.4768 8 7 1.5620 2.2002 4.7116 9 14 0.2323 4.0711 3.1585 10 1 -1.2015 3.6866 3.1176 11 1 0.4491 5.0581 4.2467 12 1 0.6202 4.6746 1.8583 13 6 1.6421 2.1239 -1.3113 14 6 2.1242 3.5780 -1.2934 15 7 3.5674 3.5943 -1.0185 16 6 4.4158 4.2420 -1.8412 17 8 3.9901 4.8185 -2.8197 18 6 5.8935 4.2501 -1.5454 19 6 6.6256 5.0484 -2.6260 20 1 6.3543 4.6902 -3.6191 21 6 8.1518 4.9696 -2.4187 22 6 8.5535 6.4104 -2.1898 23 8 9.6826 6.8001 -1.9825 24 7 7.4643 7.1863 -2.2512 25 6 6.3253 6.5254 -2.4919 26 8 5.2273 7.0302 -2.5876 27 6 4.0688 2.8860 0.1671 28 6 3.5644 1.4444 0.1358 29 1 -0.3633 0.5923 0.8398 30 1 -0.3634 0.4311 -0.9328 31 1 -0.3633 -1.0234 0.0931 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.8464 2.9114 0.9623 35 1 1.2318 2.7267 5.4563 36 1 0.5577 2.1014 -1.4185 37 1 2.1019 1.5986 -2.1484 38 1 1.5974 4.1279 -0.5136 39 1 1.9312 4.0410 -2.2610 40 1 6.2675 3.2264 -1.5344 41 1 6.0668 4.7107 -0.5728 42 1 8.3896 4.3620 -1.5456 43 1 8.6396 4.5696 -3.3076 44 1 7.4977 8.1484 -2.1312 45 1 5.1587 2.8905 0.1617 46 1 3.7038 3.3783 1.0684 47 1 3.8480 0.9383 1.0585 48 1 4.0060 0.9254 -0.7149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717241868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:46 Heat of formation + Delta-G solvation = -87.660657 kcal Electronic energy + Delta-G solvation = -30843.494517 eV Core-core repulsion = 26705.928053 eV Total energy + Delta-G solvation = -4137.566464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.11637 -40.10445 -38.84822 -38.07861 -36.12415 -34.86094 -33.88673 -32.64118 -31.03162 -30.52702 -29.76966 -28.71193 -25.67463 -24.87247 -23.57575 -22.78319 -22.06405 -21.69413 -20.95854 -19.34462 -18.25922 -17.96554 -17.78203 -17.16863 -16.78687 -16.40584 -15.73658 -15.52698 -14.96186 -14.58290 -14.45507 -14.33576 -14.23959 -14.08352 -13.88674 -13.52934 -13.41326 -13.11712 -12.93501 -12.79373 -12.50348 -12.39955 -12.09709 -11.79175 -11.58539 -11.46839 -11.27593 -11.00884 -10.94483 -10.83393 -10.66025 -10.56375 -10.54306 -10.20967 -10.18184 -10.14254 -9.76902 -9.56093 -9.42767 -8.97722 -8.28771 -7.29646 -5.82489 -3.17934 1.23791 2.44270 2.49384 2.79341 3.14716 3.32734 3.36239 3.43001 3.74168 3.88496 4.00412 4.31839 4.53902 4.64844 4.86375 4.96786 5.05377 5.12073 5.15966 5.24989 5.26940 5.42956 5.47808 5.49800 5.56095 5.64180 5.69451 5.86330 5.87206 5.98486 6.03790 6.07448 6.13155 6.29963 6.34468 6.39300 6.49356 6.55704 6.64985 6.68243 6.88014 6.96698 7.02050 7.02831 7.61307 7.67347 7.94508 8.35722 8.37129 9.15317 9.88351 10.08630 11.35543 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.003275 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.448508 B = 8547.083533 C = 9155.359804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.208 3.792 4 N -0.739 5.739 5 C -0.235 4.235 6 H 0.092 0.908 7 C 0.008 3.992 8 N -0.933 5.933 9 Si 0.875 3.125 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.277 1.277 13 C -0.133 4.133 14 C 0.117 3.883 15 N -0.601 5.601 16 C 0.506 3.494 17 O -0.531 6.531 18 C -0.128 4.128 19 C -0.108 4.108 20 H 0.133 0.867 21 C -0.156 4.156 22 C 0.531 3.469 23 O -0.490 6.490 24 N -0.685 5.685 25 C 0.524 3.476 26 O -0.444 6.444 27 C 0.113 3.887 28 C -0.132 4.132 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.414 0.586 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.935 1.167 -15.307 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C 0.117 3.883 4 N -0.382 5.382 5 C -0.365 4.365 6 H 0.109 0.891 7 C -0.187 4.187 8 N -0.580 5.580 9 Si 0.705 3.295 10 H -0.212 1.212 11 H -0.220 1.220 12 H -0.203 1.203 13 C -0.172 4.172 14 C -0.006 4.006 15 N -0.334 5.334 16 C 0.293 3.707 17 O -0.408 6.408 18 C -0.168 4.168 19 C -0.130 4.130 20 H 0.151 0.849 21 C -0.196 4.196 22 C 0.319 3.681 23 O -0.362 6.362 24 N -0.351 5.351 25 C 0.310 3.690 26 O -0.311 6.311 27 C -0.009 4.009 28 C -0.172 4.172 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.253 0.747 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.761 1.683 -15.570 19.002 hybrid contribution -0.822 1.511 0.254 1.738 sum 9.940 3.194 -15.316 18.536 Atomic orbital electron populations 1.21668 0.96261 1.00350 1.01683 1.21893 0.96283 0.97772 1.00349 1.19501 0.90970 0.91136 0.86659 1.42836 1.55317 1.37930 1.02126 1.18924 1.27920 1.08801 0.80821 0.89070 1.24621 1.00588 0.98393 0.95144 1.69680 1.49890 1.41015 0.97454 0.86721 0.81103 0.84495 0.77141 1.21228 1.22005 1.20279 1.22163 1.01377 0.95412 0.98216 1.21532 0.79880 0.97152 1.02026 1.48077 1.07411 1.51856 1.26103 1.20285 0.88116 0.79110 0.83206 1.90741 1.78448 1.43579 1.28024 1.21642 0.93451 1.02571 0.99146 1.21848 0.94335 0.92980 1.03848 0.84918 1.22620 0.95163 0.94663 1.07135 1.20771 0.83711 0.89763 0.73821 1.90820 1.20265 1.79901 1.45229 1.44879 1.10607 1.13281 1.66381 1.20717 0.83264 0.90194 0.74839 1.90899 1.22905 1.74007 1.43268 1.21687 0.97548 0.93660 0.88044 1.22158 0.97924 0.95339 1.01753 0.90896 0.94232 0.94438 0.93872 0.91774 0.80646 0.93129 0.90698 0.91547 0.91434 0.89714 0.86852 0.88336 0.85699 0.85751 0.74711 0.91227 0.89281 0.89951 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.42 37.16 0.35 -1.90 16 2 C -0.12 -1.95 4.80 -26.73 -0.13 -2.07 16 3 C 0.21 3.37 0.44 -131.78 -0.06 3.31 16 4 N -0.74 -14.85 2.79 -47.19 -0.13 -14.98 16 5 C -0.23 -5.73 9.04 -15.06 -0.14 -5.86 16 6 H 0.09 2.40 7.01 -52.49 -0.37 2.04 16 7 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 8 N -0.93 -27.42 13.97 55.49 0.78 -26.65 16 9 Si 0.87 20.96 27.68 -169.99 -4.71 16.25 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.28 6.60 56.52 0.37 -5.91 16 13 C -0.13 -1.91 4.73 -26.61 -0.13 -2.04 16 14 C 0.12 1.80 6.16 -3.71 -0.02 1.78 16 15 N -0.60 -8.71 2.98 -173.03 -0.52 -9.22 16 16 C 0.51 6.96 7.39 -10.99 -0.08 6.88 16 17 O -0.53 -9.00 13.38 -15.64 -0.21 -9.21 16 18 C -0.13 -1.12 3.36 -27.88 -0.09 -1.21 16 19 C -0.11 -0.84 2.68 -90.83 -0.24 -1.09 16 20 H 0.13 1.01 7.89 -51.93 -0.41 0.60 16 21 C -0.16 -0.79 6.67 -26.94 -0.18 -0.97 16 22 C 0.53 4.41 8.55 -11.08 -0.09 4.32 16 23 O -0.49 -5.69 18.02 5.60 0.10 -5.59 16 24 N -0.68 -5.82 5.48 -11.39 -0.06 -5.88 16 25 C 0.52 5.67 7.72 -11.09 -0.09 5.58 16 26 O -0.44 -6.92 15.90 -15.59 -0.25 -7.16 16 27 C 0.11 1.59 6.06 -3.93 -0.02 1.57 16 28 C -0.13 -1.94 4.61 -26.83 -0.12 -2.06 16 29 H 0.07 1.36 7.29 -51.93 -0.38 0.98 16 30 H 0.04 0.56 6.80 -51.93 -0.35 0.20 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.13 7.62 -51.93 -0.40 0.74 16 34 H 0.36 7.49 4.55 -40.82 -0.19 7.30 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.07 1.05 6.63 -51.93 -0.34 0.70 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.17 7.04 -51.93 -0.37 0.80 16 39 H 0.08 1.33 7.00 -51.93 -0.36 0.96 16 40 H 0.11 0.67 7.68 -51.93 -0.40 0.27 16 41 H 0.10 0.82 7.93 -51.93 -0.41 0.40 16 42 H 0.12 0.43 7.74 -51.93 -0.40 0.02 16 43 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.41 3.04 8.96 -40.82 -0.37 2.68 16 45 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 46 H 0.09 1.57 7.57 -51.93 -0.39 1.17 16 47 H 0.08 1.35 7.17 -51.93 -0.37 0.98 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -33.94 371.99 -7.63 -41.57 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -7.09 Total: 8.92 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.14 Total: 6.35 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.07 Total: -56.73 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.36 Total: -21.96 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.94 -7.63 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717241868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.089 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds