Wall clock time and date at job start Tue Mar 31 2020 21:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47007 * 2 1 4 4 N 1.46499 * 109.46277 * 54.63780 * 3 2 1 5 5 C 1.36935 * 119.99727 * 64.78742 * 4 3 2 6 6 H 1.08002 * 120.00184 * 354.79091 * 5 4 3 7 7 C 1.38811 * 120.00076 * 174.78308 * 5 4 3 8 8 N 1.31618 * 120.00360 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99674 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47287 * 89.99966 * 9 7 5 11 11 H 1.48504 * 109.47088 * 209.99302 * 9 7 5 12 12 H 1.48499 * 109.47464 * 329.99673 * 9 7 5 13 13 C 1.53040 * 109.45737 * 294.66568 * 3 2 1 14 14 C 1.53202 * 109.31243 * 178.61653 * 13 3 2 15 15 N 1.46921 * 108.77261 * 54.63573 * 14 13 3 16 16 C 1.34771 * 120.63024 * 126.37499 * 15 14 13 17 17 O 1.21280 * 119.99952 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00135 * 179.97438 * 16 15 14 19 19 C 1.52995 * 109.47106 * 179.97438 * 18 16 15 20 20 H 1.09005 * 110.66270 * 307.92838 * 19 18 16 21 21 C 1.54229 * 110.60443 * 184.99982 * 19 18 16 22 22 C 1.51321 * 103.55185 * 241.47642 * 21 19 18 23 23 O 1.21232 * 125.39207 * 179.97438 * 22 21 19 24 24 N 1.33875 * 109.20579 * 0.02562 * 22 21 19 25 25 C 1.33870 * 114.47896 * 359.97438 * 24 22 21 26 26 O 1.21226 * 125.39798 * 180.02562 * 25 24 22 27 27 C 1.46928 * 118.74057 * 306.63964 * 15 14 13 28 28 C 1.52766 * 109.00537 * 53.31576 * 27 15 14 29 29 H 1.09003 * 109.47017 * 305.19680 * 1 2 3 30 30 H 1.08997 * 109.47454 * 65.19769 * 1 2 3 31 31 H 1.08999 * 109.47160 * 185.19617 * 1 2 3 32 32 H 1.09003 * 109.46958 * 239.99848 * 2 1 3 33 33 H 1.09000 * 109.46998 * 119.99505 * 2 1 3 34 34 H 0.96998 * 120.00061 * 244.79337 * 4 3 2 35 35 H 0.96998 * 120.00361 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.49668 * 58.66608 * 13 3 2 37 37 H 1.08994 * 109.50076 * 298.56471 * 13 3 2 38 38 H 1.08999 * 109.58235 * 294.84625 * 14 13 3 39 39 H 1.08998 * 109.70149 * 174.49368 * 14 13 3 40 40 H 1.08998 * 109.47405 * 59.99398 * 18 16 15 41 41 H 1.09003 * 109.46868 * 299.99474 * 18 16 15 42 42 H 1.08998 * 110.60884 * 359.97438 * 21 19 18 43 43 H 1.08997 * 110.60906 * 122.80817 * 21 19 18 44 44 H 0.97006 * 122.75683 * 179.97438 * 24 22 21 45 45 H 1.08992 * 109.58816 * 173.14859 * 27 15 14 46 46 H 1.08995 * 109.58906 * 293.57887 * 27 15 14 47 47 H 1.09000 * 109.56449 * 185.55222 * 28 27 15 48 48 H 1.08991 * 109.36199 * 65.49649 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4490 2.1692 1.1264 5 6 1.7472 1.8005 2.4111 6 1 2.3498 0.9233 2.5951 7 6 1.2750 2.5543 3.4768 8 7 1.5620 2.2002 4.7116 9 14 0.2323 4.0711 3.1585 10 1 -1.2015 3.6866 3.1176 11 1 0.4491 5.0581 4.2467 12 1 0.6202 4.6746 1.8583 13 6 1.6421 2.1239 -1.3113 14 6 2.1242 3.5780 -1.2934 15 7 3.5674 3.5943 -1.0185 16 6 4.4158 4.2420 -1.8412 17 8 3.9901 4.8185 -2.8197 18 6 5.8935 4.2501 -1.5454 19 6 6.6256 5.0484 -2.6260 20 1 6.3543 4.6902 -3.6191 21 6 8.1518 4.9696 -2.4187 22 6 8.5535 6.4104 -2.1898 23 8 9.6826 6.8001 -1.9825 24 7 7.4643 7.1863 -2.2512 25 6 6.3253 6.5254 -2.4919 26 8 5.2273 7.0302 -2.5876 27 6 4.0688 2.8860 0.1671 28 6 3.5644 1.4444 0.1358 29 1 -0.3633 0.5923 0.8398 30 1 -0.3634 0.4311 -0.9328 31 1 -0.3633 -1.0234 0.0931 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.8464 2.9114 0.9623 35 1 1.2318 2.7267 5.4563 36 1 0.5577 2.1014 -1.4185 37 1 2.1019 1.5986 -2.1484 38 1 1.5974 4.1279 -0.5136 39 1 1.9312 4.0410 -2.2610 40 1 6.2675 3.2264 -1.5344 41 1 6.0668 4.7107 -0.5728 42 1 8.3896 4.3620 -1.5456 43 1 8.6396 4.5696 -3.3076 44 1 7.4977 8.1484 -2.1312 45 1 5.1587 2.8905 0.1617 46 1 3.7038 3.3783 1.0684 47 1 3.8480 0.9383 1.0585 48 1 4.0060 0.9254 -0.7149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717241868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:45 Heat of formation + Delta-G solvation = -111.776973 kcal Electronic energy + Delta-G solvation = -30844.540279 eV Core-core repulsion = 26705.928053 eV Total energy + Delta-G solvation = -4138.612226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.84491 -41.23426 -39.77075 -39.25481 -36.95851 -36.16839 -34.64000 -34.40440 -32.23436 -32.00374 -31.19206 -29.47558 -26.66307 -25.94162 -25.25744 -24.03884 -22.90114 -22.65032 -21.79069 -20.45063 -19.68870 -19.33519 -18.92033 -18.08003 -17.71733 -17.20513 -16.67318 -16.58821 -16.31014 -16.01857 -15.69196 -15.40850 -15.26917 -15.06448 -15.06114 -14.69504 -14.56174 -14.35787 -14.18998 -13.88642 -13.60568 -13.41046 -13.15784 -12.94808 -12.93676 -12.85328 -12.53396 -12.36918 -12.17301 -12.05738 -11.93353 -11.70665 -11.67931 -11.58287 -11.47172 -11.38895 -11.02267 -10.93476 -10.83022 -10.57636 -9.53913 -9.09463 -7.91020 -5.19624 0.49722 1.37997 1.40221 1.45724 1.73895 1.77296 1.82972 2.12983 2.54074 3.15617 3.23501 3.35618 3.42580 3.62447 3.72322 3.79691 3.98242 4.08052 4.14841 4.28232 4.35140 4.46776 4.53928 4.60256 4.63764 4.70001 4.76303 4.79205 4.84872 4.86074 4.92994 4.94139 5.05723 5.09589 5.17629 5.25704 5.31636 5.38467 5.41907 5.60245 5.65609 5.66910 5.76401 5.96289 6.31885 6.34702 6.60069 6.87679 7.21273 7.31266 7.99746 8.16482 9.30784 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.003275 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.448508 B = 8547.083533 C = 9155.359804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.198 3.802 4 N -0.739 5.739 5 C -0.184 4.184 6 H 0.070 0.930 7 C -0.058 4.058 8 N -0.985 5.985 9 Si 0.928 3.072 10 H -0.289 1.289 11 H -0.310 1.310 12 H -0.260 1.260 13 C -0.121 4.121 14 C 0.116 3.884 15 N -0.605 5.605 16 C 0.499 3.501 17 O -0.566 6.566 18 C -0.125 4.125 19 C -0.100 4.100 20 H 0.140 0.860 21 C -0.136 4.136 22 C 0.532 3.468 23 O -0.524 6.524 24 N -0.683 5.683 25 C 0.521 3.479 26 O -0.502 6.502 27 C 0.117 3.883 28 C -0.128 4.128 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.358 0.642 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.158 0.842 41 H 0.107 0.893 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.414 0.586 45 H 0.112 0.888 46 H 0.048 0.952 47 H 0.062 0.938 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.849 -0.361 -18.012 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.109 3.891 4 N -0.382 5.382 5 C -0.315 4.315 6 H 0.088 0.912 7 C -0.249 4.249 8 N -0.637 5.637 9 Si 0.759 3.241 10 H -0.216 1.216 11 H -0.238 1.238 12 H -0.186 1.186 13 C -0.159 4.159 14 C -0.007 4.007 15 N -0.338 5.338 16 C 0.288 3.712 17 O -0.445 6.445 18 C -0.165 4.165 19 C -0.122 4.122 20 H 0.158 0.842 21 C -0.175 4.175 22 C 0.323 3.677 23 O -0.399 6.399 24 N -0.347 5.347 25 C 0.310 3.690 26 O -0.373 6.373 27 C -0.005 4.005 28 C -0.167 4.167 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.191 0.809 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.175 0.825 41 H 0.125 0.875 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.253 0.747 45 H 0.130 0.870 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.707 0.138 -18.346 22.317 hybrid contribution -1.381 1.958 0.973 2.586 sum 11.326 2.096 -17.373 20.844 Atomic orbital electron populations 1.21629 0.96362 1.00553 1.01216 1.21851 0.96165 0.97158 1.00719 1.19856 0.92086 0.91127 0.86072 1.42903 1.55416 1.38053 1.01796 1.18852 1.24021 1.06320 0.82342 0.91179 1.25141 1.03269 1.01365 0.95155 1.69823 1.52903 1.42703 0.98289 0.85824 0.79586 0.81726 0.76962 1.21563 1.23771 1.18558 1.22071 1.01818 0.94501 0.97515 1.21400 0.80936 0.97559 1.00804 1.48147 1.07030 1.52265 1.26351 1.21166 0.90026 0.77685 0.82278 1.90736 1.79499 1.44619 1.29598 1.21788 0.89677 1.05378 0.99636 1.21876 0.96147 0.90166 1.04008 0.84220 1.22714 0.92595 0.92322 1.09876 1.21357 0.82799 0.91088 0.72459 1.90817 1.21484 1.80718 1.46879 1.44947 1.10516 1.13680 1.65596 1.21335 0.82638 0.91792 0.73276 1.90876 1.25061 1.75312 1.46021 1.21625 0.99953 0.92573 0.86324 1.22097 0.96481 0.95934 1.02219 0.94403 0.92192 0.93398 0.90607 0.94216 0.80939 0.94062 0.90360 0.89173 0.94062 0.90119 0.82463 0.87507 0.82770 0.82554 0.74677 0.86967 0.93381 0.91927 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.42 71.98 0.68 -3.49 16 2 C -0.12 -3.48 4.80 30.60 0.15 -3.33 16 3 C 0.20 5.96 0.44 3.63 0.00 5.97 16 4 N -0.74 -29.36 2.79 -303.22 -0.85 -30.21 16 5 C -0.18 -9.10 9.04 84.03 0.76 -8.34 16 6 H 0.07 3.77 7.01 -2.91 -0.02 3.75 16 7 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 8 N -0.98 -60.10 13.97 21.65 0.30 -59.80 16 9 Si 0.93 44.64 27.68 68.60 1.90 46.54 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 11 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 12 H -0.26 -11.60 6.60 99.48 0.66 -10.95 16 13 C -0.12 -3.12 4.73 30.68 0.15 -2.97 16 14 C 0.12 3.42 6.16 86.37 0.53 3.95 16 15 N -0.60 -16.05 2.98 -819.74 -2.44 -18.49 16 16 C 0.50 12.37 7.39 87.66 0.65 13.02 16 17 O -0.57 -18.34 13.38 17.24 0.23 -18.11 16 18 C -0.13 -1.63 3.36 29.85 0.10 -1.53 16 19 C -0.10 -1.19 2.68 -10.93 -0.03 -1.22 16 20 H 0.14 1.57 7.89 -2.38 -0.02 1.55 16 21 C -0.14 -0.70 6.67 30.46 0.20 -0.50 16 22 C 0.53 7.43 8.55 87.99 0.75 8.19 16 23 O -0.52 -11.18 18.02 -2.88 -0.05 -11.23 16 24 N -0.68 -10.70 5.48 -427.79 -2.34 -13.04 16 25 C 0.52 10.57 7.72 87.99 0.68 11.25 16 26 O -0.50 -15.74 15.90 17.40 0.28 -15.46 16 27 C 0.12 3.00 6.06 86.22 0.52 3.52 16 28 C -0.13 -3.37 4.61 30.53 0.14 -3.23 16 29 H 0.04 1.38 7.29 -2.39 -0.02 1.36 16 30 H 0.06 1.52 6.80 -2.39 -0.02 1.51 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.35 7.62 -2.39 -0.02 1.33 16 34 H 0.36 14.72 4.55 -92.71 -0.42 14.30 16 35 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.08 1.98 6.63 -2.39 -0.02 1.96 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.41 7.04 -2.39 -0.02 1.40 16 39 H 0.08 2.45 7.00 -2.39 -0.02 2.43 16 40 H 0.16 0.73 7.68 -2.39 -0.02 0.71 16 41 H 0.11 1.31 7.93 -2.39 -0.02 1.29 16 42 H 0.15 0.04 7.74 -2.39 -0.02 0.02 16 43 H 0.16 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.41 6.01 8.96 -92.70 -0.83 5.18 16 45 H 0.11 1.88 5.93 -2.39 -0.01 1.87 16 46 H 0.05 1.64 7.57 -2.39 -0.02 1.63 16 47 H 0.06 1.93 7.17 -2.39 -0.02 1.92 16 48 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -79.77 371.99 2.48 -77.30 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.30 Total: 23.98 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 5.75 Total: 18.54 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -5.33 Total: -121.54 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: 0.46 Total: -44.81 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Total: -79.77 2.48 -77.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717241868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.481 kcal (2) G-P(sol) polarization free energy of solvation -79.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds