Wall clock time and date at job start Tue Mar 31 2020 20:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47277 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47168 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46848 * 305.00557 * 13 12 11 15 15 C 1.52992 * 109.47057 * 185.00219 * 13 12 11 16 16 N 1.46903 * 109.46745 * 65.00336 * 13 12 11 17 17 C 1.46897 * 111.00076 * 204.99964 * 16 13 12 18 18 C 1.50691 * 109.47541 * 179.97438 * 17 16 13 19 19 O 1.21297 * 120.00007 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00373 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00524 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99659 * 0.02562 * 21 20 18 23 23 C 1.38941 * 120.00457 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00348 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 120.00116 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46882 * 89.99656 * 25 23 21 27 27 H 1.48494 * 109.47104 * 209.99842 * 25 23 21 28 28 H 1.48497 * 109.46594 * 329.99987 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 32 32 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 34 34 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 35 35 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 36 36 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 38 38 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 39 39 H 1.08991 * 109.47354 * 299.99916 * 12 11 10 40 40 H 1.09007 * 109.46682 * 60.00259 * 12 11 10 41 41 H 1.09005 * 109.47151 * 299.99985 * 15 13 12 42 42 H 1.09002 * 109.47374 * 60.00463 * 15 13 12 43 43 H 1.08999 * 109.47272 * 180.02562 * 15 13 12 44 44 H 1.00906 * 110.99954 * 328.95354 * 16 13 12 45 45 H 1.09000 * 109.46959 * 300.00283 * 17 16 13 46 46 H 1.09009 * 109.47320 * 59.99717 * 17 16 13 47 47 H 0.96997 * 120.00213 * 0.02562 * 20 18 17 48 48 H 0.96995 * 120.00023 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2737 -5.1251 2.6417 13 6 0.8564 -6.5971 2.6511 14 1 -0.0536 -6.7205 2.0639 15 6 0.5988 -7.0449 4.0912 16 7 1.9296 -7.4139 2.0688 17 6 1.3971 -8.6669 1.5171 18 6 2.5243 -9.4762 0.9295 19 8 3.6598 -9.0512 0.9670 20 7 2.2711 -10.6726 0.3631 21 6 3.2967 -11.4091 -0.1710 22 1 4.3076 -11.0307 -0.1377 23 6 3.0355 -12.6424 -0.7554 24 7 4.0187 -13.3485 -1.2670 25 14 1.2868 -13.2967 -0.8138 26 1 0.6301 -12.8430 -2.0661 27 1 1.3122 -14.7810 -0.7778 28 1 0.5280 -12.7860 0.3561 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8903 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9895 2.1011 -0.0004 33 1 5.7911 -0.8249 -0.0010 34 1 4.9566 -2.1203 0.8899 35 1 4.9561 -2.1212 -0.8900 36 1 1.9423 -2.7616 2.0242 37 1 0.4544 -4.7532 0.6840 38 1 2.1670 -5.2380 0.6849 39 1 2.2297 -5.0148 3.1534 40 1 0.5170 -4.5300 3.1532 41 1 1.5088 -6.9215 4.6784 42 1 -0.1975 -6.4388 4.5233 43 1 0.3019 -8.0937 4.0980 44 1 2.4374 -6.8967 1.3668 45 1 0.9151 -9.2375 2.3109 46 1 0.6685 -8.4406 0.7386 47 1 1.3632 -11.0127 0.3335 48 1 3.8362 -14.2093 -1.6752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717340658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:56 Heat of formation + Delta-G solvation = -65.058259 kcal Electronic energy + Delta-G solvation = -28437.515447 eV Core-core repulsion = 24300.929096 eV Total energy + Delta-G solvation = -4136.586350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.89612 -39.69765 -38.61691 -37.26565 -34.84834 -34.28590 -33.91766 -32.87647 -31.75225 -31.39994 -29.34582 -28.33260 -26.85625 -26.55660 -24.44504 -23.60347 -22.43772 -20.78574 -20.26076 -19.91520 -19.34917 -18.35447 -18.02120 -16.84997 -16.42677 -16.13961 -16.02440 -15.75665 -15.32969 -15.10514 -14.72659 -14.52153 -14.05094 -13.93664 -13.70511 -13.63887 -13.40890 -13.30831 -13.26510 -13.07464 -13.01757 -12.71773 -12.64841 -12.28740 -12.16498 -11.97754 -11.80497 -11.66666 -11.38697 -11.34952 -11.16777 -10.87626 -10.57263 -10.27949 -9.94967 -9.75864 -9.54594 -9.32728 -8.83006 -8.55267 -8.18267 -8.12708 -6.28430 -3.79725 1.27476 1.85819 2.31420 2.48998 3.00499 3.04747 3.09058 3.16982 3.77078 4.08001 4.10230 4.13259 4.40246 4.52667 4.60026 4.72219 4.81223 4.82440 4.92031 4.94052 5.11234 5.21107 5.23791 5.24068 5.29407 5.32734 5.36082 5.45099 5.47998 5.55716 5.61275 5.69555 5.76818 5.79818 5.81792 5.88357 5.95684 5.98734 6.02374 6.15701 6.26983 6.70942 7.12405 7.22248 7.58118 7.61255 7.97430 8.17354 8.62574 8.97749 9.45258 9.85615 10.84730 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.002056 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.948019 B =13612.338553 C =14337.934047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.148 4.148 3 C -0.041 4.041 4 O -0.172 6.172 5 C 0.049 3.951 6 C -0.084 4.084 7 C -0.234 4.234 8 C 0.591 3.409 9 O -0.526 6.526 10 N -0.719 5.719 11 C 0.111 3.889 12 C -0.132 4.132 13 C 0.086 3.914 14 H 0.045 0.955 15 C -0.139 4.139 16 N -0.666 5.666 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.207 0.793 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.402 0.598 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.350 0.650 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 28.261 8.432 31.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.150 4.150 3 C -0.107 4.107 4 O -0.069 6.069 5 C -0.003 4.003 6 C -0.141 4.141 7 C -0.238 4.238 8 C 0.376 3.624 9 O -0.402 6.402 10 N -0.371 5.371 11 C -0.012 4.012 12 C -0.170 4.170 13 C -0.024 4.024 14 H 0.063 0.937 15 C -0.197 4.197 16 N -0.301 5.301 17 C -0.086 4.086 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.223 0.777 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.172 0.828 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.629 27.803 8.166 30.235 hybrid contribution -1.981 -0.244 -0.584 2.079 sum -10.610 27.560 7.583 30.489 Atomic orbital electron populations 1.20192 0.88616 1.02736 1.02682 1.21338 0.96794 0.90529 1.06360 1.23619 0.79630 0.99525 1.07973 1.83739 1.29582 1.21916 1.71639 1.22606 0.96116 0.80744 1.00791 1.20509 0.90946 0.97869 1.04746 1.20982 0.93262 0.93883 1.15668 1.17294 0.76637 0.84686 0.83749 1.90853 1.49964 1.67605 1.31731 1.45954 1.70354 1.12415 1.08393 1.21525 1.01070 0.80875 0.97734 1.21981 1.03444 0.96113 0.95481 1.21460 0.93311 0.90857 0.96807 0.93702 1.21786 1.01445 1.01247 0.95235 1.60199 1.24623 1.05534 1.39736 1.21762 0.96005 0.92393 0.98429 1.19713 0.89929 0.83082 0.83689 1.90563 1.22636 1.70713 1.60719 1.42207 1.09328 1.17831 1.53684 1.19430 0.90977 0.99586 1.33271 0.86285 1.25041 0.97825 0.96214 0.97143 1.69624 1.31087 1.13396 1.38078 0.86670 0.84423 0.79575 0.78719 1.19649 1.20184 1.19484 0.90930 0.91092 0.91497 0.77652 0.89733 0.88927 0.88742 0.76398 0.91361 0.90730 0.89911 0.90570 0.91754 0.92838 0.92448 0.82778 0.89445 0.93706 0.79709 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.38 36.01 0.37 -0.22 16 2 C -0.15 -1.33 6.38 -102.49 -0.65 -1.98 16 3 C -0.04 -0.31 11.96 29.30 0.35 0.04 16 4 O -0.17 -1.58 10.52 7.66 0.08 -1.50 16 5 C 0.05 0.48 7.37 -34.96 -0.26 0.22 16 6 C -0.08 -0.64 10.18 36.01 0.37 -0.27 16 7 C -0.23 -2.54 6.07 -103.28 -0.63 -3.16 16 8 C 0.59 7.44 7.41 -12.54 -0.09 7.35 16 9 O -0.53 -8.99 17.11 5.26 0.09 -8.90 16 10 N -0.72 -6.94 5.55 -61.40 -0.34 -7.28 16 11 C 0.11 1.17 5.50 -4.04 -0.02 1.14 16 12 C -0.13 -1.14 4.92 -26.73 -0.13 -1.27 16 13 C 0.09 0.94 2.65 -67.71 -0.18 0.76 16 14 H 0.05 0.47 7.80 -51.93 -0.41 0.07 16 15 C -0.14 -1.39 9.41 37.15 0.35 -1.04 16 16 N -0.67 -10.08 5.93 -108.00 -0.64 -10.72 16 17 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 18 C 0.45 10.39 7.82 -10.99 -0.09 10.30 16 19 O -0.56 -15.37 15.78 5.54 0.09 -15.28 16 20 N -0.59 -14.33 5.09 -10.97 -0.06 -14.39 16 21 C -0.30 -8.74 10.16 -14.94 -0.15 -8.89 16 22 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.09 13.96 55.50 0.77 -25.32 16 25 Si 0.88 19.66 27.74 -169.99 -4.72 14.94 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 2.80 8.46 -40.82 -0.35 2.45 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 44 H 0.35 5.64 6.17 -39.29 -0.24 5.40 16 45 H 0.09 1.31 7.44 -51.93 -0.39 0.93 16 46 H 0.04 0.67 8.06 -51.92 -0.42 0.25 16 47 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 48 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 404.97 15.07 6.10 6.10 Total: -1.00 -36.97 404.97 -6.89 -43.85 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.38 Total: 13.72 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.89 Total: 4.77 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.26 Total: -57.71 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: 0.26 Total: -25.69 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.72 Total: 14.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.97 -6.89 -43.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717340658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.204 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds