Wall clock time and date at job start Tue Mar 31 2020 20:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47277 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47168 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46848 * 305.00557 * 13 12 11 15 15 C 1.52992 * 109.47057 * 185.00219 * 13 12 11 16 16 N 1.46903 * 109.46745 * 65.00336 * 13 12 11 17 17 C 1.46897 * 111.00076 * 204.99964 * 16 13 12 18 18 C 1.50691 * 109.47541 * 179.97438 * 17 16 13 19 19 O 1.21297 * 120.00007 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00373 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00524 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99659 * 0.02562 * 21 20 18 23 23 C 1.38941 * 120.00457 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00348 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 120.00116 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46882 * 89.99656 * 25 23 21 27 27 H 1.48494 * 109.47104 * 209.99842 * 25 23 21 28 28 H 1.48497 * 109.46594 * 329.99987 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 32 32 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 34 34 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 35 35 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 36 36 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 38 38 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 39 39 H 1.08991 * 109.47354 * 299.99916 * 12 11 10 40 40 H 1.09007 * 109.46682 * 60.00259 * 12 11 10 41 41 H 1.09005 * 109.47151 * 299.99985 * 15 13 12 42 42 H 1.09002 * 109.47374 * 60.00463 * 15 13 12 43 43 H 1.08999 * 109.47272 * 180.02562 * 15 13 12 44 44 H 1.00906 * 110.99954 * 328.95354 * 16 13 12 45 45 H 1.09000 * 109.46959 * 300.00283 * 17 16 13 46 46 H 1.09009 * 109.47320 * 59.99717 * 17 16 13 47 47 H 0.96997 * 120.00213 * 0.02562 * 20 18 17 48 48 H 0.96995 * 120.00023 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2737 -5.1251 2.6417 13 6 0.8564 -6.5971 2.6511 14 1 -0.0536 -6.7205 2.0639 15 6 0.5988 -7.0449 4.0912 16 7 1.9296 -7.4139 2.0688 17 6 1.3971 -8.6669 1.5171 18 6 2.5243 -9.4762 0.9295 19 8 3.6598 -9.0512 0.9670 20 7 2.2711 -10.6726 0.3631 21 6 3.2967 -11.4091 -0.1710 22 1 4.3076 -11.0307 -0.1377 23 6 3.0355 -12.6424 -0.7554 24 7 4.0187 -13.3485 -1.2670 25 14 1.2868 -13.2967 -0.8138 26 1 0.6301 -12.8430 -2.0661 27 1 1.3122 -14.7810 -0.7778 28 1 0.5280 -12.7860 0.3561 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8903 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9895 2.1011 -0.0004 33 1 5.7911 -0.8249 -0.0010 34 1 4.9566 -2.1203 0.8899 35 1 4.9561 -2.1212 -0.8900 36 1 1.9423 -2.7616 2.0242 37 1 0.4544 -4.7532 0.6840 38 1 2.1670 -5.2380 0.6849 39 1 2.2297 -5.0148 3.1534 40 1 0.5170 -4.5300 3.1532 41 1 1.5088 -6.9215 4.6784 42 1 -0.1975 -6.4388 4.5233 43 1 0.3019 -8.0937 4.0980 44 1 2.4374 -6.8967 1.3668 45 1 0.9151 -9.2375 2.3109 46 1 0.6685 -8.4406 0.7386 47 1 1.3632 -11.0127 0.3335 48 1 3.8362 -14.2093 -1.6752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717340658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:54 Heat of formation + Delta-G solvation = -94.861236 kcal Electronic energy + Delta-G solvation = -28438.807801 eV Core-core repulsion = 24300.929096 eV Total energy + Delta-G solvation = -4137.878704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.57059 -40.70139 -40.32758 -38.43034 -36.11578 -35.74938 -34.94415 -33.78163 -33.54887 -32.60792 -30.16833 -28.97239 -28.21491 -27.42644 -25.77207 -24.88341 -23.28295 -21.66455 -21.33495 -20.99113 -20.66332 -20.26852 -18.79839 -17.89892 -17.57725 -17.18564 -16.95508 -16.86074 -16.70772 -16.49198 -16.00371 -15.59352 -15.26275 -15.06981 -14.80602 -14.54540 -14.39602 -14.39205 -14.19745 -14.11324 -13.93496 -13.86562 -13.60352 -13.40410 -13.29717 -13.18397 -12.91708 -12.59679 -12.43140 -12.36292 -12.26185 -12.21547 -11.97865 -11.79531 -11.52879 -11.27408 -10.49029 -10.44953 -10.26382 -10.26228 -9.47614 -9.33098 -8.42486 -6.03514 0.57645 1.20529 1.28881 1.34537 1.35213 1.43435 1.83253 1.93964 2.19916 2.21934 2.72254 3.13723 3.39459 3.49869 3.67251 3.77628 3.92589 3.96625 4.09884 4.14987 4.18146 4.34439 4.40323 4.45956 4.49557 4.51283 4.58229 4.58928 4.67224 4.72885 4.73231 4.95822 4.96047 4.98086 5.01546 5.03697 5.15565 5.19153 5.28920 5.45124 5.48740 5.52478 5.90446 6.04571 6.08545 6.38080 6.38958 6.58426 6.86526 7.07273 7.38075 7.94697 8.75193 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.002056 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.948019 B =13612.338553 C =14337.934047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.169 4.169 3 C -0.028 4.028 4 O -0.177 6.177 5 C 0.043 3.957 6 C -0.085 4.085 7 C -0.260 4.260 8 C 0.592 3.408 9 O -0.582 6.582 10 N -0.701 5.701 11 C 0.114 3.886 12 C -0.118 4.118 13 C 0.084 3.916 14 H 0.058 0.942 15 C -0.136 4.136 16 N -0.684 5.684 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.273 1.273 28 H -0.230 1.230 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.248 0.752 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.417 0.583 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.341 0.659 45 H 0.115 0.885 46 H 0.073 0.927 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 30.044 10.318 34.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.171 4.171 3 C -0.094 4.094 4 O -0.074 6.074 5 C -0.009 4.009 6 C -0.142 4.142 7 C -0.264 4.264 8 C 0.379 3.621 9 O -0.462 6.462 10 N -0.353 5.353 11 C -0.009 4.009 12 C -0.156 4.156 13 C -0.025 4.025 14 H 0.076 0.924 15 C -0.194 4.194 16 N -0.319 5.319 17 C -0.072 4.072 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.153 1.153 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.254 0.746 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.161 0.839 45 H 0.133 0.867 46 H 0.091 0.909 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.396 29.619 10.126 33.667 hybrid contribution -0.685 -0.692 -1.145 1.503 sum -13.081 28.927 8.981 32.993 Atomic orbital electron populations 1.20226 0.87412 1.03735 1.02593 1.21646 0.97829 0.90136 1.07455 1.24411 0.78544 1.00871 1.05542 1.83758 1.30642 1.21438 1.71516 1.22853 0.96310 0.81209 1.00555 1.20565 0.91129 0.98039 1.04419 1.21066 0.94566 0.93451 1.17336 1.17611 0.75668 0.85357 0.83505 1.90816 1.52734 1.68946 1.33687 1.45822 1.68898 1.12118 1.08432 1.21451 0.99793 0.80770 0.98924 1.21900 1.04489 0.95152 0.94036 1.21627 0.92405 0.91239 0.97245 0.92423 1.21781 1.01964 1.01419 0.94242 1.60251 1.26567 1.05680 1.39391 1.21689 0.93367 0.92393 0.99727 1.21032 0.91048 0.82619 0.81812 1.90539 1.25556 1.71726 1.62075 1.42038 1.09124 1.18119 1.54005 1.19005 0.89894 1.01171 1.35761 0.92746 1.26142 1.04154 0.95659 0.95557 1.69807 1.34615 1.14127 1.38908 0.85358 0.76914 0.78614 0.80600 1.18290 1.19827 1.15343 0.91540 0.88227 0.92355 0.73616 0.87792 0.88185 0.90104 0.74568 0.91795 0.93653 0.89972 0.87314 0.92758 0.89952 0.93093 0.83875 0.86717 0.90921 0.77480 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.38 71.24 0.74 -0.29 16 2 C -0.17 -2.81 6.38 -18.49 -0.12 -2.93 16 3 C -0.03 -0.36 11.96 66.89 0.80 0.44 16 4 O -0.18 -3.00 10.52 4.51 0.05 -2.95 16 5 C 0.04 0.82 7.37 25.26 0.19 1.01 16 6 C -0.09 -1.31 10.18 71.24 0.72 -0.59 16 7 C -0.26 -5.64 6.07 -18.99 -0.12 -5.76 16 8 C 0.59 15.34 7.41 86.65 0.64 15.99 16 9 O -0.58 -21.01 17.11 -4.08 -0.07 -21.08 16 10 N -0.70 -13.29 5.55 -466.41 -2.59 -15.88 16 11 C 0.11 2.34 5.50 86.38 0.48 2.82 16 12 C -0.12 -1.75 4.92 30.60 0.15 -1.60 16 13 C 0.08 1.60 2.65 44.91 0.12 1.72 16 14 H 0.06 1.00 7.80 -2.39 -0.02 0.98 16 15 C -0.14 -2.26 9.41 71.98 0.68 -1.58 16 16 N -0.68 -20.01 5.93 -495.59 -2.94 -22.95 16 17 C 0.06 1.91 5.96 85.55 0.51 2.42 16 18 C 0.45 20.86 7.82 87.65 0.69 21.54 16 19 O -0.61 -35.12 15.78 -3.08 -0.05 -35.17 16 20 N -0.59 -28.74 5.09 -307.00 -1.56 -30.30 16 21 C -0.33 -19.79 10.16 84.04 0.85 -18.93 16 22 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.02 -0.94 5.50 84.92 0.47 -0.47 16 24 N -0.93 -57.37 13.96 21.66 0.30 -57.06 16 25 Si 0.97 39.63 27.74 68.60 1.90 41.54 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.25 0.73 8.06 -2.91 -0.02 0.70 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.42 5.26 8.46 -92.70 -0.78 4.48 16 37 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.05 1.22 6.43 -2.39 -0.02 1.21 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 0.92 7.45 -2.39 -0.02 0.90 16 44 H 0.34 11.13 6.17 -89.69 -0.55 10.58 16 45 H 0.11 3.04 7.44 -2.39 -0.02 3.02 16 46 H 0.07 1.93 8.06 -2.38 -0.02 1.91 16 47 H 0.39 15.67 5.76 -92.71 -0.53 15.14 16 48 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -88.78 404.97 0.91 -87.87 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.93 Total: 42.20 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.80 Total: 13.79 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -6.79 Total: -126.19 kcal Atomic # 8 Polarization: -59.13 SS G_CDS: -0.07 Total: -59.20 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.54 kcal Total: -88.78 0.91 -87.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717340658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.996 kcal (2) G-P(sol) polarization free energy of solvation -88.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds