Wall clock time and date at job start Tue Mar 31 2020 21:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47177 * 2 1 4 4 C 1.38356 * 120.27137 * 270.01908 * 3 2 1 5 5 N 1.31877 * 121.19024 * 179.70114 * 4 3 2 6 6 C 1.32248 * 121.79591 * 0.56587 * 5 4 3 7 7 O 1.35421 * 119.79602 * 179.70925 * 6 5 4 8 8 C 1.40274 * 120.40043 * 359.43911 * 6 5 4 9 9 C 1.47520 * 120.59953 * 180.25189 * 8 6 5 10 10 O 1.21594 * 119.99571 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00194 * 180.02562 * 9 8 6 12 12 C 1.46501 * 120.00074 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47388 * 179.97438 * 12 11 9 14 14 O 1.42895 * 109.47321 * 64.99362 * 13 12 11 15 15 C 1.42895 * 114.00289 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47403 * 180.02562 * 15 14 13 17 17 N 1.46493 * 109.46944 * 65.00327 * 16 15 14 18 18 C 1.46509 * 119.99761 * 269.99873 * 17 16 15 19 19 C 1.36934 * 120.00788 * 89.99708 * 17 16 15 20 20 H 1.08001 * 119.99286 * 20.36481 * 19 17 16 21 21 C 1.38807 * 120.00623 * 200.36422 * 19 17 16 22 22 N 1.31613 * 120.00191 * 14.99612 * 21 19 17 23 23 Si 1.86804 * 119.99882 * 194.99249 * 21 19 17 24 24 H 1.48497 * 109.46929 * 85.00666 * 23 21 19 25 25 H 1.48503 * 109.46811 * 205.00231 * 23 21 19 26 26 H 1.48495 * 109.47419 * 325.00158 * 23 21 19 27 27 C 1.38339 * 120.27366 * 89.99839 * 3 2 1 28 28 H 1.09003 * 109.47383 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47569 * 300.00339 * 1 2 3 30 30 H 1.09006 * 109.47162 * 60.00130 * 1 2 3 31 31 H 1.08996 * 109.47569 * 239.99661 * 2 1 3 32 32 H 1.08999 * 109.47069 * 119.99471 * 2 1 3 33 33 H 1.08009 * 119.40485 * 359.97438 * 4 3 2 34 34 H 0.96704 * 114.00330 * 269.72684 * 7 6 5 35 35 H 0.96998 * 119.99996 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.46920 * 299.99512 * 12 11 9 37 37 H 1.09003 * 109.47405 * 59.99038 * 12 11 9 38 38 H 1.08996 * 109.47513 * 185.00161 * 13 12 11 39 39 H 1.09007 * 109.46687 * 304.99648 * 13 12 11 40 40 H 1.09001 * 109.47548 * 300.00554 * 15 14 13 41 41 H 1.09006 * 109.47301 * 60.00039 * 15 14 13 42 42 H 1.09001 * 109.46535 * 184.99891 * 16 15 14 43 43 H 1.08996 * 109.46892 * 304.99759 * 16 15 14 44 44 H 1.09000 * 109.46984 * 95.10903 * 18 17 16 45 45 H 1.08996 * 109.47214 * 215.10256 * 18 17 16 46 46 H 1.08998 * 109.47271 * 335.10845 * 18 17 16 47 47 H 0.96996 * 120.00800 * 179.97438 * 22 21 19 48 48 H 1.07997 * 120.82412 * 0.04167 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2644 2.0785 -1.1949 5 7 2.6984 3.3236 -1.2161 6 6 2.9417 3.9957 -0.1034 7 8 3.3921 5.2710 -0.1724 8 6 2.7306 3.3976 1.1478 9 6 2.9953 4.1452 2.3917 10 8 3.4006 5.2903 2.3382 11 7 2.7888 3.5585 3.5874 12 6 3.0512 4.3011 4.8227 13 6 2.7376 3.4127 6.0282 14 8 3.6418 2.3065 6.0528 15 6 3.4334 1.4096 7.1455 16 6 4.4523 0.2705 7.0718 17 7 5.8012 0.8088 7.2642 18 6 6.5834 1.2552 6.1086 19 6 6.3310 0.8947 8.5239 20 1 5.9274 0.2891 9.3219 21 6 7.3867 1.7602 8.7754 22 7 7.6873 2.7016 7.9061 23 14 8.3806 1.5889 10.3478 24 1 9.4463 0.5736 10.1515 25 1 8.9985 2.8958 10.6875 26 1 7.4872 1.1613 11.4541 27 6 2.2648 2.0783 1.1947 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0827 1.5643 -2.1272 34 1 4.3559 5.3472 -0.1925 35 1 2.4659 2.6449 3.6300 36 1 4.0996 4.5978 4.8525 37 1 2.4210 5.1900 4.8531 38 1 2.8473 3.9921 6.9449 39 1 1.7146 3.0442 5.9516 40 1 3.5573 1.9471 8.0856 41 1 2.4249 0.9994 7.0917 42 1 4.2378 -0.4597 7.8522 43 1 4.3889 -0.2111 6.0961 44 1 6.4566 2.3298 5.9773 45 1 7.6371 1.0313 6.2747 46 1 6.2383 0.7366 5.2141 47 1 8.4248 3.3066 8.0819 48 1 2.0914 1.5860 2.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717715286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:24 Heat of formation + Delta-G solvation = -91.818111 kcal Electronic energy + Delta-G solvation = -29295.465042 eV Core-core repulsion = 25157.718298 eV Total energy + Delta-G solvation = -4137.746745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.97826 -40.26267 -39.02014 -38.37741 -37.20143 -35.75519 -35.19018 -33.69122 -33.26760 -30.85414 -30.05906 -29.30779 -27.81199 -25.91209 -25.00236 -24.81825 -23.84390 -22.63127 -22.13025 -21.51684 -19.93739 -18.76791 -18.54257 -18.34009 -17.58395 -17.22224 -17.09706 -16.79633 -16.21264 -16.12255 -15.73094 -15.50123 -15.27817 -15.21638 -14.84082 -14.73488 -14.37586 -14.28817 -14.04869 -13.97920 -13.77126 -13.15460 -13.03497 -13.01474 -12.80135 -12.70855 -12.52978 -12.48764 -12.34005 -12.32074 -12.00396 -11.81189 -11.77844 -11.66954 -11.26235 -11.01489 -10.60495 -10.48936 -10.36635 -10.21273 -9.79647 -8.75178 -7.77535 -5.23188 -0.51068 0.01113 1.46693 1.48694 1.56282 1.74668 2.00317 2.46249 2.53416 2.74177 2.86491 3.35071 3.43675 3.62951 3.68983 3.77812 3.83011 3.96562 4.14713 4.17580 4.28138 4.45502 4.51311 4.53759 4.55520 4.60340 4.63636 4.69082 4.69962 4.83680 4.87643 4.93588 4.94625 5.02031 5.20096 5.22513 5.30889 5.34770 5.37873 5.38841 5.51348 5.67137 5.83205 6.35121 6.39217 6.46646 6.51112 6.78031 7.10430 7.19198 7.93945 8.38182 9.25386 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.002540 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.081494 B =11021.972805 C =11758.557731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.141 4.141 4 C 0.149 3.851 5 N -0.527 5.527 6 C 0.342 3.658 7 O -0.481 6.481 8 C -0.214 4.214 9 C 0.557 3.443 10 O -0.564 6.564 11 N -0.703 5.703 12 C 0.131 3.869 13 C 0.054 3.946 14 O -0.393 6.393 15 C 0.051 3.949 16 C 0.145 3.855 17 N -0.613 5.613 18 C 0.195 3.805 19 C -0.260 4.260 20 H 0.076 0.924 21 C -0.058 4.058 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.287 1.287 25 H -0.301 1.301 26 H -0.266 1.266 27 C -0.023 4.023 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.197 0.803 34 H 0.415 0.585 35 H 0.413 0.587 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.064 0.936 44 H -0.001 1.001 45 H 0.005 0.995 46 H 0.022 0.978 47 H 0.243 0.757 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.911 -7.311 -16.114 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.143 4.143 4 C -0.009 4.009 5 N -0.245 5.245 6 C 0.163 3.837 7 O -0.291 6.291 8 C -0.221 4.221 9 C 0.344 3.656 10 O -0.444 6.444 11 N -0.356 5.356 12 C 0.007 3.993 13 C -0.023 4.023 14 O -0.313 6.313 15 C -0.028 4.028 16 C 0.019 3.981 17 N -0.336 5.336 18 C 0.050 3.950 19 C -0.390 4.390 20 H 0.094 0.906 21 C -0.253 4.253 22 N -0.584 5.584 23 Si 0.794 3.206 24 H -0.214 1.214 25 H -0.228 1.228 26 H -0.191 1.191 27 C -0.048 4.048 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.214 0.786 34 H 0.276 0.724 35 H 0.250 0.750 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.017 0.983 45 H 0.024 0.976 46 H 0.040 0.960 47 H 0.053 0.947 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.767 -5.788 -16.996 25.259 hybrid contribution 1.129 0.076 1.939 2.245 sum -16.639 -5.712 -15.057 23.156 Atomic orbital electron populations 1.21788 0.93911 1.02887 1.02056 1.20570 0.96493 0.89127 1.05223 1.21185 1.00732 0.99761 0.92644 1.23310 0.90129 0.87690 0.99730 1.67376 1.15855 1.10228 1.31080 1.19362 0.92831 0.84458 0.87035 1.84645 1.29039 1.19943 1.95441 1.21027 1.10634 0.96965 0.93452 1.18171 0.77588 0.85955 0.83869 1.90794 1.46941 1.19007 1.87673 1.45678 1.67189 1.18079 1.04642 1.21304 1.01171 0.94629 0.82180 1.22701 0.94056 0.88765 0.96785 1.87963 1.57675 1.37059 1.48574 1.23276 0.99280 0.92119 0.88130 1.21155 0.83140 0.93375 1.00452 1.44133 1.12814 1.73561 1.03098 1.20308 0.92730 0.95668 0.86274 1.19585 1.13828 1.17035 0.88538 0.90613 1.25736 1.02396 0.96209 1.00909 1.70294 1.30895 1.19104 1.38065 0.85315 0.79043 0.76128 0.80147 1.21425 1.22755 1.19104 1.21939 0.91391 0.90787 1.00731 0.90725 0.93062 0.92525 0.88423 0.89452 0.78636 0.72382 0.74959 0.93603 0.89026 0.92566 0.89909 0.96155 0.90938 0.90892 0.91814 0.98281 0.97600 0.95983 0.94742 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 71.98 0.71 -0.24 16 2 C -0.08 -0.51 6.08 29.85 0.18 -0.33 16 3 C -0.14 -1.83 5.14 -19.81 -0.10 -1.93 16 4 C 0.15 2.25 10.84 84.71 0.92 3.17 16 5 N -0.53 -12.15 10.37 -307.99 -3.19 -15.34 16 6 C 0.34 9.02 7.77 85.13 0.66 9.68 16 7 O -0.48 -13.62 11.66 -66.35 -0.77 -14.40 16 8 C -0.21 -5.20 5.90 -19.91 -0.12 -5.32 16 9 C 0.56 16.36 7.77 86.69 0.67 17.03 16 10 O -0.56 -20.95 15.19 16.80 0.26 -20.70 16 11 N -0.70 -17.62 5.46 -466.28 -2.54 -20.16 16 12 C 0.13 3.66 6.06 86.38 0.52 4.18 16 13 C 0.05 1.42 6.07 71.98 0.44 1.86 16 14 O -0.39 -13.45 9.84 -148.98 -1.47 -14.92 16 15 C 0.05 1.67 6.28 71.98 0.45 2.12 16 16 C 0.14 5.35 6.11 86.38 0.53 5.87 16 17 N -0.61 -30.32 2.89 -726.94 -2.10 -32.42 16 18 C 0.20 10.03 8.62 127.77 1.10 11.13 16 19 C -0.26 -14.06 9.68 84.03 0.81 -13.25 16 20 H 0.08 3.90 7.86 -2.91 -0.02 3.87 16 21 C -0.06 -3.26 5.06 84.86 0.43 -2.83 16 22 N -0.94 -56.90 10.67 21.65 0.23 -56.67 16 23 Si 0.96 45.40 29.58 68.60 2.03 47.43 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C -0.02 -0.37 9.31 22.72 0.21 -0.16 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.10 0.36 8.09 -2.39 -0.02 0.34 16 32 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 33 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.41 8.85 9.06 -74.05 -0.67 8.18 16 35 H 0.41 7.99 6.57 -92.71 -0.61 7.38 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.07 2.47 8.03 -2.39 -0.02 2.45 16 43 H 0.06 2.09 7.86 -2.39 -0.02 2.07 16 44 H 0.00 -0.07 7.40 -2.39 -0.02 -0.08 16 45 H 0.01 0.30 7.21 -2.39 -0.02 0.28 16 46 H 0.02 0.97 7.84 -2.39 -0.02 0.95 16 47 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.16 1.86 6.51 -2.91 -0.02 1.84 16 Total: -1.00 -79.64 401.75 -0.44 -80.09 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.30 Total: 16.12 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: 7.42 Total: 30.98 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -7.61 Total: -124.60 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -1.98 Total: -50.01 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -79.64 -0.44 -80.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717715286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.732 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds