Wall clock time and date at job start Tue Mar 31 2020 21:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47331 * 2 1 4 4 C 1.38024 * 119.51751 * 124.99485 * 3 2 1 5 5 C 1.39926 * 119.13502 * 180.02562 * 4 3 2 6 6 C 1.48160 * 120.88819 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99820 * 221.28571 * 6 5 4 8 8 N 1.34776 * 120.00385 * 41.29001 * 6 5 4 9 9 C 1.46507 * 119.99827 * 355.25692 * 8 6 5 10 10 C 1.46500 * 120.00369 * 175.25320 * 8 6 5 11 11 C 1.53003 * 109.47044 * 90.00059 * 10 8 6 12 12 H 1.09000 * 109.46868 * 59.99918 * 11 10 8 13 13 O 1.42903 * 109.46793 * 300.00128 * 11 10 8 14 14 C 1.53001 * 109.47130 * 180.02562 * 11 10 8 15 15 N 1.46496 * 109.46889 * 184.99897 * 14 11 10 16 16 C 1.46504 * 119.99972 * 269.99652 * 15 14 11 17 17 C 1.36939 * 119.99757 * 90.00133 * 15 14 11 18 18 H 1.07995 * 119.99904 * 329.53850 * 17 15 14 19 19 C 1.38814 * 119.99519 * 149.26244 * 17 15 14 20 20 N 1.31620 * 119.99751 * 163.73720 * 19 17 15 21 21 Si 1.86793 * 120.00325 * 343.73849 * 19 17 15 22 22 H 1.48506 * 109.47371 * 87.22974 * 21 19 17 23 23 H 1.48504 * 109.47001 * 207.22811 * 21 19 17 24 24 H 1.48498 * 109.47294 * 327.22703 * 21 19 17 25 25 C 1.39610 * 118.21752 * 0.25360 * 5 4 3 26 26 C 1.38850 * 118.94600 * 359.50320 * 25 5 4 27 27 O 1.35683 * 119.62108 * 180.22499 * 26 25 5 28 28 N 1.31880 * 119.51364 * 305.02222 * 3 2 1 29 29 H 1.08998 * 109.46665 * 60.00121 * 1 2 3 30 30 H 1.08998 * 109.46699 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47332 * 299.99982 * 1 2 3 32 32 H 1.09000 * 109.47332 * 240.00018 * 2 1 3 33 33 H 1.09002 * 109.47130 * 119.99924 * 2 1 3 34 34 H 1.08001 * 120.42931 * 0.02562 * 4 3 2 35 35 H 1.08995 * 109.46609 * 268.18660 * 9 8 6 36 36 H 1.08999 * 109.47013 * 28.18093 * 9 8 6 37 37 H 1.08998 * 109.46738 * 148.18534 * 9 8 6 38 38 H 1.08999 * 109.46612 * 330.00253 * 10 8 6 39 39 H 1.08997 * 109.47168 * 210.00112 * 10 8 6 40 40 H 0.96701 * 114.00185 * 299.99693 * 13 11 10 41 41 H 1.09006 * 109.46671 * 64.99968 * 14 11 10 42 42 H 1.08996 * 109.46615 * 305.00037 * 14 11 10 43 43 H 1.09000 * 109.47064 * 274.65291 * 16 15 14 44 44 H 1.08997 * 109.47038 * 34.66003 * 16 15 14 45 45 H 1.08999 * 109.46709 * 154.65278 * 16 15 14 46 46 H 0.96995 * 120.00565 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.52574 * 179.74628 * 25 5 4 48 48 H 0.96700 * 114.00590 * 270.28027 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3695 3.1534 0.9766 6 6 4.3101 3.6365 2.0144 7 8 4.1626 4.7397 2.5018 8 7 5.3294 2.8524 2.4177 9 6 5.4474 1.4842 1.9073 10 6 6.3195 3.3682 3.3663 11 6 5.8611 3.0688 4.7951 12 1 5.7595 1.9915 4.9257 13 8 4.6005 3.6985 5.0326 14 6 6.8947 3.6081 5.7859 15 7 6.5169 3.2178 7.1464 16 6 5.6554 4.0918 7.9466 17 6 6.9691 2.0361 7.6702 18 1 7.1582 1.1947 7.0203 19 6 7.1898 1.9218 9.0359 20 7 7.3099 0.7320 9.5858 21 14 7.3164 3.4564 10.0934 22 1 5.9597 3.8640 10.5389 23 1 8.1623 3.1713 11.2802 24 1 7.9280 4.5539 9.3018 25 6 2.9147 4.0056 -0.0313 26 6 2.0372 3.5091 -0.9860 27 8 1.5901 4.3242 -1.9744 28 7 1.6280 2.2528 -0.9399 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2339 1.1435 1.7495 35 1 4.9318 0.7996 2.5806 36 1 4.9979 1.4262 0.9160 37 1 6.5003 1.2090 1.8456 38 1 6.4210 4.4456 3.2355 39 1 7.2810 2.8879 3.1851 40 1 4.6164 4.6603 4.9337 41 1 6.9316 4.6953 5.7167 42 1 7.8752 3.1954 5.5485 43 1 6.2657 4.8423 8.4492 44 1 4.9345 4.5862 7.2956 45 1 5.1252 3.4971 8.6904 46 1 7.4638 0.6520 10.5401 47 1 3.2432 5.0337 -0.0701 48 1 0.7784 4.8013 -1.7538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717941536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:42 Heat of formation + Delta-G solvation = -53.489660 kcal Electronic energy + Delta-G solvation = -29716.526145 eV Core-core repulsion = 25580.441446 eV Total energy + Delta-G solvation = -4136.084698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26732 -39.76196 -37.70222 -37.41300 -35.63904 -34.79833 -34.21160 -32.63273 -31.59827 -30.24944 -29.70724 -27.36519 -26.69047 -25.74977 -24.82477 -23.87469 -22.81922 -21.71600 -20.62393 -19.80346 -18.73946 -17.59228 -17.04210 -16.84258 -16.53825 -16.23501 -15.98028 -15.70738 -15.20997 -14.97722 -14.75383 -14.62841 -14.41515 -13.95061 -13.80233 -13.45800 -13.41588 -13.33816 -12.88547 -12.76924 -12.54805 -12.30080 -12.14939 -12.11850 -12.11118 -11.75958 -11.63280 -11.39004 -11.21986 -10.77474 -10.58508 -10.43219 -10.24145 -10.11649 -10.09004 -9.89443 -9.64265 -9.51892 -9.18124 -8.81600 -8.46960 -6.84453 -5.95764 -3.37179 0.44916 0.58507 2.49262 2.71784 3.09916 3.36718 3.38511 3.48502 3.51973 4.00908 4.10804 4.53357 4.54449 4.61448 4.68969 4.80405 4.88928 4.93428 4.94416 4.97514 5.05396 5.21387 5.26385 5.35571 5.38053 5.42917 5.46820 5.53416 5.57476 5.61438 5.64784 5.76003 5.83971 5.87897 5.91909 6.05945 6.32516 6.35883 6.41980 6.54473 6.68357 6.82545 7.07445 7.15165 7.51324 7.93721 7.99487 8.21501 8.32956 8.94891 9.72086 10.08130 11.20461 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.002493 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.249188 B =11230.905296 C =11906.810211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C 0.153 3.847 4 C -0.154 4.154 5 C -0.056 4.056 6 C 0.564 3.436 7 O -0.521 6.521 8 N -0.596 5.596 9 C 0.066 3.934 10 C 0.082 3.918 11 C 0.071 3.929 12 H 0.098 0.902 13 O -0.548 6.548 14 C 0.125 3.875 15 N -0.603 5.603 16 C 0.104 3.896 17 C -0.265 4.265 18 H 0.082 0.918 19 C 0.026 3.974 20 N -0.912 5.912 21 Si 0.899 3.101 22 H -0.288 1.288 23 H -0.306 1.306 24 H -0.276 1.276 25 C -0.143 4.143 26 C 0.313 3.687 27 O -0.480 6.480 28 N -0.489 5.489 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.366 0.634 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.006 0.994 44 H 0.039 0.961 45 H 0.056 0.944 46 H 0.263 0.737 47 H 0.148 0.852 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 2.312 -22.979 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C 0.015 3.985 4 C -0.174 4.174 5 C -0.067 4.067 6 C 0.351 3.649 7 O -0.397 6.397 8 N -0.328 5.328 9 C -0.076 4.076 10 C -0.041 4.041 11 C 0.008 3.992 12 H 0.116 0.884 13 O -0.352 6.352 14 C -0.003 4.003 15 N -0.326 5.326 16 C -0.041 4.041 17 C -0.394 4.394 18 H 0.099 0.901 19 C -0.173 4.173 20 N -0.555 5.555 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.235 1.235 24 H -0.202 1.202 25 C -0.165 4.165 26 C 0.134 3.866 27 O -0.287 6.287 28 N -0.209 5.209 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.213 0.787 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.023 0.977 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.166 0.834 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.721 1.757 -23.382 25.383 hybrid contribution 0.495 1.748 1.390 2.287 sum -9.226 3.505 -21.991 24.105 Atomic orbital electron populations 1.21679 0.93835 1.02032 1.02703 1.20559 0.97360 0.89629 1.03693 1.20989 0.92381 0.95924 0.89179 1.22462 0.98544 0.95653 1.00727 1.20239 0.97266 0.93848 0.95384 1.18024 0.80626 0.84738 0.81556 1.90751 1.71930 1.20689 1.56332 1.47578 1.26758 1.13980 1.44518 1.22211 1.03484 0.82515 0.99435 1.22468 0.90837 1.00813 0.89961 1.23174 0.86022 0.99109 0.90870 0.88366 1.86574 1.31633 1.24035 1.92954 1.21371 0.95972 0.96990 0.85952 1.43911 1.55051 1.22302 1.11329 1.21403 0.93084 0.93998 0.95594 1.18834 1.40039 0.88292 0.92204 0.90079 1.25336 0.98552 0.96324 0.97083 1.69802 1.52310 1.21894 1.11470 0.86790 0.77168 0.83905 0.79136 1.21500 1.23477 1.20155 1.22123 0.99587 1.01540 0.93286 1.18916 0.93360 0.87259 0.87079 1.84788 1.46845 1.58147 1.38912 1.66765 1.25537 1.04037 1.24519 0.91629 0.92035 0.92723 0.89579 0.89670 0.83126 0.91681 0.90594 0.90518 0.89767 0.89374 0.78748 0.94009 0.91843 0.97672 0.94272 0.92588 0.92747 0.83403 0.73987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.77 37.16 0.36 -0.65 16 2 C -0.07 -0.52 6.33 -27.89 -0.18 -0.69 16 3 C 0.15 1.44 6.18 -82.65 -0.51 0.93 16 4 C -0.15 -1.48 7.18 -39.03 -0.28 -1.76 16 5 C -0.06 -0.64 5.19 -104.68 -0.54 -1.18 16 6 C 0.56 7.52 6.95 -12.19 -0.08 7.44 16 7 O -0.52 -8.40 15.07 -8.16 -0.12 -8.52 16 8 N -0.60 -7.05 2.83 -182.57 -0.52 -7.57 16 9 C 0.07 0.57 8.99 59.85 0.54 1.11 16 10 C 0.08 1.03 5.18 -4.04 -0.02 1.01 16 11 C 0.07 1.16 3.48 -26.73 -0.09 1.07 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 13 O -0.55 -9.82 10.80 -48.75 -0.53 -10.35 16 14 C 0.13 2.31 5.35 -4.04 -0.02 2.29 16 15 N -0.60 -14.30 2.61 -181.12 -0.47 -14.77 16 16 C 0.10 2.36 8.25 59.85 0.49 2.85 16 17 C -0.27 -7.36 10.02 -15.06 -0.15 -7.51 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 19 C 0.03 0.76 5.28 -17.43 -0.09 0.67 16 20 N -0.91 -28.03 13.97 55.49 0.78 -27.25 16 21 Si 0.90 23.04 24.03 -169.99 -4.08 18.96 16 22 H -0.29 -7.20 6.70 56.52 0.38 -6.82 16 23 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 24 H -0.28 -6.95 6.56 56.52 0.37 -6.58 16 25 C -0.14 -1.53 9.71 -38.84 -0.38 -1.91 16 26 C 0.31 3.26 7.74 -17.16 -0.13 3.13 16 27 O -0.48 -4.18 13.56 -18.75 -0.25 -4.43 16 28 N -0.49 -5.28 9.87 -9.60 -0.09 -5.37 16 29 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.46 7.86 -51.93 -0.41 0.05 16 34 H 0.15 1.25 5.71 -52.49 -0.30 0.95 16 35 H 0.06 0.55 7.36 -51.93 -0.38 0.17 16 36 H 0.08 0.57 5.42 -51.93 -0.28 0.29 16 37 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 38 H 0.08 1.07 7.49 -51.93 -0.39 0.68 16 39 H 0.09 0.92 7.91 -51.93 -0.41 0.51 16 40 H 0.37 5.99 8.31 45.56 0.38 6.36 16 41 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 42 H 0.06 1.13 8.04 -51.93 -0.42 0.72 16 43 H 0.01 0.13 5.35 -51.93 -0.28 -0.15 16 44 H 0.04 0.78 7.04 -51.93 -0.37 0.42 16 45 H 0.06 1.37 6.24 -51.93 -0.32 1.05 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 48 H 0.40 1.53 9.06 45.56 0.41 1.94 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -36.08 385.39 -6.31 -42.39 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.73 Total: 4.32 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.09 Total: 6.79 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.31 Total: -54.96 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.90 Total: -23.30 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.08 Total: 18.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.08 -6.31 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717941536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.103 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds