Wall clock time and date at job start Tue Mar 31 2020 21:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47331 * 2 1 4 4 C 1.38024 * 119.51751 * 124.99485 * 3 2 1 5 5 C 1.39926 * 119.13502 * 180.02562 * 4 3 2 6 6 C 1.48160 * 120.88819 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99820 * 221.28571 * 6 5 4 8 8 N 1.34776 * 120.00385 * 41.29001 * 6 5 4 9 9 C 1.46507 * 119.99827 * 355.25692 * 8 6 5 10 10 C 1.46500 * 120.00369 * 175.25320 * 8 6 5 11 11 C 1.53003 * 109.47044 * 90.00059 * 10 8 6 12 12 H 1.09000 * 109.46868 * 59.99918 * 11 10 8 13 13 O 1.42903 * 109.46793 * 300.00128 * 11 10 8 14 14 C 1.53001 * 109.47130 * 180.02562 * 11 10 8 15 15 N 1.46496 * 109.46889 * 184.99897 * 14 11 10 16 16 C 1.46504 * 119.99972 * 269.99652 * 15 14 11 17 17 C 1.36939 * 119.99757 * 90.00133 * 15 14 11 18 18 H 1.07995 * 119.99904 * 329.53850 * 17 15 14 19 19 C 1.38814 * 119.99519 * 149.26244 * 17 15 14 20 20 N 1.31620 * 119.99751 * 163.73720 * 19 17 15 21 21 Si 1.86793 * 120.00325 * 343.73849 * 19 17 15 22 22 H 1.48506 * 109.47371 * 87.22974 * 21 19 17 23 23 H 1.48504 * 109.47001 * 207.22811 * 21 19 17 24 24 H 1.48498 * 109.47294 * 327.22703 * 21 19 17 25 25 C 1.39610 * 118.21752 * 0.25360 * 5 4 3 26 26 C 1.38850 * 118.94600 * 359.50320 * 25 5 4 27 27 O 1.35683 * 119.62108 * 180.22499 * 26 25 5 28 28 N 1.31880 * 119.51364 * 305.02222 * 3 2 1 29 29 H 1.08998 * 109.46665 * 60.00121 * 1 2 3 30 30 H 1.08998 * 109.46699 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47332 * 299.99982 * 1 2 3 32 32 H 1.09000 * 109.47332 * 240.00018 * 2 1 3 33 33 H 1.09002 * 109.47130 * 119.99924 * 2 1 3 34 34 H 1.08001 * 120.42931 * 0.02562 * 4 3 2 35 35 H 1.08995 * 109.46609 * 268.18660 * 9 8 6 36 36 H 1.08999 * 109.47013 * 28.18093 * 9 8 6 37 37 H 1.08998 * 109.46738 * 148.18534 * 9 8 6 38 38 H 1.08999 * 109.46612 * 330.00253 * 10 8 6 39 39 H 1.08997 * 109.47168 * 210.00112 * 10 8 6 40 40 H 0.96701 * 114.00185 * 299.99693 * 13 11 10 41 41 H 1.09006 * 109.46671 * 64.99968 * 14 11 10 42 42 H 1.08996 * 109.46615 * 305.00037 * 14 11 10 43 43 H 1.09000 * 109.47064 * 274.65291 * 16 15 14 44 44 H 1.08997 * 109.47038 * 34.66003 * 16 15 14 45 45 H 1.08999 * 109.46709 * 154.65278 * 16 15 14 46 46 H 0.96995 * 120.00565 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.52574 * 179.74628 * 25 5 4 48 48 H 0.96700 * 114.00590 * 270.28027 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3695 3.1534 0.9766 6 6 4.3101 3.6365 2.0144 7 8 4.1626 4.7397 2.5018 8 7 5.3294 2.8524 2.4177 9 6 5.4474 1.4842 1.9073 10 6 6.3195 3.3682 3.3663 11 6 5.8611 3.0688 4.7951 12 1 5.7595 1.9915 4.9257 13 8 4.6005 3.6985 5.0326 14 6 6.8947 3.6081 5.7859 15 7 6.5169 3.2178 7.1464 16 6 5.6554 4.0918 7.9466 17 6 6.9691 2.0361 7.6702 18 1 7.1582 1.1947 7.0203 19 6 7.1898 1.9218 9.0359 20 7 7.3099 0.7320 9.5858 21 14 7.3164 3.4564 10.0934 22 1 5.9597 3.8640 10.5389 23 1 8.1623 3.1713 11.2802 24 1 7.9280 4.5539 9.3018 25 6 2.9147 4.0056 -0.0313 26 6 2.0372 3.5091 -0.9860 27 8 1.5901 4.3242 -1.9744 28 7 1.6280 2.2528 -0.9399 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2339 1.1435 1.7495 35 1 4.9318 0.7996 2.5806 36 1 4.9979 1.4262 0.9160 37 1 6.5003 1.2090 1.8456 38 1 6.4210 4.4456 3.2355 39 1 7.2810 2.8879 3.1851 40 1 4.6164 4.6603 4.9337 41 1 6.9316 4.6953 5.7167 42 1 7.8752 3.1954 5.5485 43 1 6.2657 4.8423 8.4492 44 1 4.9345 4.5862 7.2956 45 1 5.1252 3.4971 8.6904 46 1 7.4638 0.6520 10.5401 47 1 3.2432 5.0337 -0.0701 48 1 0.7784 4.8013 -1.7538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717941536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:41 Heat of formation + Delta-G solvation = -83.241731 kcal Electronic energy + Delta-G solvation = -29717.816291 eV Core-core repulsion = 25580.441446 eV Total energy + Delta-G solvation = -4137.374845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.08202 -40.71070 -38.90596 -38.31694 -36.96290 -36.23061 -34.91538 -33.67386 -33.41319 -31.50231 -30.49877 -28.46358 -27.84346 -27.55524 -25.75554 -24.68988 -23.93891 -22.79357 -22.20487 -20.64177 -19.52976 -18.93436 -18.46011 -17.82133 -17.51226 -17.29521 -17.11543 -16.97504 -16.56532 -16.25178 -15.93488 -15.56037 -15.30566 -15.16823 -14.99774 -14.74166 -14.48216 -14.22399 -14.15609 -14.11048 -13.97343 -13.54931 -13.26085 -13.09547 -12.87157 -12.78013 -12.62743 -12.35056 -12.32662 -12.12114 -12.10763 -12.00243 -11.93488 -11.58292 -11.43968 -11.32952 -10.93442 -10.71292 -10.45659 -9.91339 -9.71384 -8.75577 -8.17043 -5.54113 -0.36756 -0.15577 1.33477 1.40414 1.49936 1.56456 1.80861 2.37217 2.42767 2.64036 3.08139 3.18455 3.34931 3.42918 3.66210 3.80790 3.85436 3.99974 4.08982 4.18294 4.22908 4.28306 4.38675 4.42196 4.44786 4.48401 4.57321 4.60658 4.67657 4.69132 4.75785 4.81427 4.84506 4.88897 4.98772 5.01769 5.08666 5.20341 5.24847 5.29768 5.39667 5.46870 5.88771 6.13225 6.21464 6.52234 6.79798 6.90368 6.93323 6.98983 7.62969 8.01752 9.02924 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.002493 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.249188 B =11230.905296 C =11906.810211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C 0.152 3.848 4 C -0.150 4.150 5 C -0.067 4.067 6 C 0.559 3.441 7 O -0.556 6.556 8 N -0.596 5.596 9 C 0.060 3.940 10 C 0.091 3.909 11 C 0.084 3.916 12 H 0.074 0.926 13 O -0.564 6.564 14 C 0.120 3.880 15 N -0.618 5.618 16 C 0.105 3.895 17 C -0.249 4.249 18 H 0.055 0.945 19 C -0.033 4.033 20 N -0.959 5.959 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.313 1.313 24 H -0.264 1.264 25 C -0.150 4.150 26 C 0.312 3.688 27 O -0.487 6.487 28 N -0.504 5.504 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.164 0.836 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.373 0.627 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.012 0.988 44 H 0.066 0.934 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.149 0.851 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 2.945 -24.421 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C 0.015 3.985 4 C -0.170 4.170 5 C -0.078 4.078 6 C 0.347 3.653 7 O -0.435 6.435 8 N -0.326 5.326 9 C -0.081 4.081 10 C -0.032 4.032 11 C 0.021 3.979 12 H 0.092 0.908 13 O -0.370 6.370 14 C -0.006 4.006 15 N -0.342 5.342 16 C -0.040 4.040 17 C -0.378 4.378 18 H 0.073 0.927 19 C -0.228 4.228 20 N -0.605 5.605 21 Si 0.786 3.214 22 H -0.206 1.206 23 H -0.242 1.242 24 H -0.189 1.189 25 C -0.172 4.172 26 C 0.133 3.867 27 O -0.297 6.297 28 N -0.224 5.224 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.182 0.818 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.221 0.779 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.029 0.971 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.070 0.930 47 H 0.167 0.833 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -9.886 2.417 -24.880 26.881 hybrid contribution 0.468 1.519 1.701 2.328 sum -9.418 3.935 -23.179 25.327 Atomic orbital electron populations 1.21658 0.93928 1.02771 1.01687 1.20686 0.97196 0.88249 1.05111 1.21413 0.91799 0.96802 0.88535 1.22585 0.98340 0.95133 1.00989 1.20171 0.97599 0.94741 0.95298 1.18358 0.80888 0.84430 0.81620 1.90721 1.72936 1.22178 1.57639 1.47658 1.26093 1.15016 1.43848 1.22432 1.04991 0.80719 1.00007 1.22298 0.91854 1.01415 0.87642 1.22878 0.84865 0.97352 0.92780 0.90813 1.86546 1.32460 1.24761 1.93239 1.21617 0.96852 0.98554 0.83576 1.44071 1.55452 1.21369 1.13272 1.21397 0.93401 0.93541 0.95668 1.18820 1.38026 0.89147 0.91840 0.92724 1.25972 0.99540 0.98713 0.98595 1.69927 1.55004 1.23919 1.11669 0.85843 0.77331 0.80823 0.77369 1.20587 1.24195 1.18935 1.22158 0.99910 1.01622 0.93539 1.18984 0.93219 0.87438 0.87057 1.84736 1.48203 1.58177 1.38595 1.66853 1.26001 1.04326 1.25207 0.92778 0.90440 0.93573 0.88511 0.87857 0.81824 0.91448 0.89301 0.88698 0.89556 0.86754 0.77929 0.91620 0.91235 0.97067 0.91601 0.94895 0.92994 0.83342 0.71674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.77 71.98 0.70 -1.06 16 2 C -0.07 -0.87 6.33 29.85 0.19 -0.69 16 3 C 0.15 2.62 6.18 42.50 0.26 2.88 16 4 C -0.15 -2.65 7.18 22.63 0.16 -2.49 16 5 C -0.07 -1.45 5.19 -19.90 -0.10 -1.55 16 6 C 0.56 14.29 6.95 86.88 0.60 14.90 16 7 O -0.56 -17.55 15.07 9.17 0.14 -17.41 16 8 N -0.60 -12.98 2.83 -849.83 -2.40 -15.39 16 9 C 0.06 0.90 8.99 127.77 1.15 2.04 16 10 C 0.09 2.08 5.18 86.38 0.45 2.53 16 11 C 0.08 2.60 3.48 30.60 0.11 2.71 16 12 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 13 O -0.56 -19.48 10.80 -136.05 -1.47 -20.95 16 14 C 0.12 4.20 5.35 86.38 0.46 4.66 16 15 N -0.62 -28.53 2.61 -726.93 -1.90 -30.42 16 16 C 0.10 4.55 8.25 127.77 1.05 5.60 16 17 C -0.25 -13.85 10.02 84.03 0.84 -13.00 16 18 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 19 C -0.03 -1.95 5.28 84.86 0.45 -1.50 16 20 N -0.96 -60.19 13.97 21.65 0.30 -59.89 16 21 Si 0.96 47.42 24.03 68.60 1.65 49.07 16 22 H -0.28 -13.33 6.70 99.48 0.67 -12.66 16 23 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 24 H -0.26 -12.47 6.56 99.48 0.65 -11.81 16 25 C -0.15 -3.11 9.71 22.75 0.22 -2.89 16 26 C 0.31 6.21 7.74 84.78 0.66 6.86 16 27 O -0.49 -7.97 13.56 -90.02 -1.22 -9.19 16 28 N -0.50 -10.26 9.87 -297.16 -2.93 -13.19 16 29 H 0.05 0.79 7.94 -2.39 -0.02 0.77 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.84 7.86 -2.39 -0.02 0.82 16 34 H 0.16 2.37 5.71 -2.91 -0.02 2.35 16 35 H 0.07 1.00 7.36 -2.39 -0.02 0.98 16 36 H 0.09 1.11 5.42 -2.39 -0.01 1.10 16 37 H 0.09 1.09 7.92 -2.39 -0.02 1.07 16 38 H 0.09 1.99 7.49 -2.39 -0.02 1.97 16 39 H 0.11 2.02 7.91 -2.39 -0.02 2.01 16 40 H 0.37 11.61 8.31 -74.06 -0.62 11.00 16 41 H 0.07 2.01 8.07 -2.38 -0.02 1.99 16 42 H 0.07 2.34 8.04 -2.39 -0.02 2.33 16 43 H 0.01 0.49 5.35 -2.39 -0.01 0.48 16 44 H 0.07 2.49 7.04 -2.39 -0.02 2.47 16 45 H 0.03 1.56 6.24 -2.39 -0.01 1.55 16 46 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 47 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 48 H 0.42 2.74 9.06 -74.06 -0.67 2.07 16 Total: -1.00 -77.98 385.39 -1.01 -78.99 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.38 Total: 19.38 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 7.20 Total: 19.00 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -6.93 Total: -118.89 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -2.55 Total: -47.56 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.65 Total: 49.07 kcal Total: -77.98 -1.01 -78.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717941536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.252 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds