Wall clock time and date at job start Tue Mar 31 2020 21:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47333 * 2 1 4 4 C 1.38021 * 119.51184 * 124.99590 * 3 2 1 5 5 C 1.39931 * 119.12741 * 180.02562 * 4 3 2 6 6 C 1.48160 * 120.89002 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00384 * 215.69167 * 6 5 4 8 8 N 1.34781 * 119.99837 * 35.69787 * 6 5 4 9 9 C 1.46494 * 119.99952 * 356.49345 * 8 6 5 10 10 C 1.46497 * 120.00144 * 176.50255 * 8 6 5 11 11 C 1.53003 * 109.47220 * 89.99546 * 10 8 6 12 12 H 1.09001 * 109.47145 * 304.99493 * 11 10 8 13 13 O 1.42894 * 109.47336 * 65.00564 * 11 10 8 14 14 C 1.53002 * 109.47129 * 185.00239 * 11 10 8 15 15 N 1.46499 * 109.47277 * 179.97438 * 14 11 10 16 16 C 1.46496 * 119.99798 * 90.00058 * 15 14 11 17 17 C 1.36939 * 119.99973 * 269.99939 * 15 14 11 18 18 H 1.07998 * 120.00031 * 34.46585 * 17 15 14 19 19 C 1.38813 * 119.99716 * 214.46866 * 17 15 14 20 20 N 1.31620 * 120.00056 * 5.23974 * 19 17 15 21 21 Si 1.86795 * 119.99736 * 185.23946 * 19 17 15 22 22 H 1.48504 * 109.47345 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47507 * 119.99971 * 21 19 17 24 24 H 1.48505 * 109.47160 * 239.99898 * 21 19 17 25 25 C 1.39609 * 118.21838 * 0.26075 * 5 4 3 26 26 C 1.38854 * 118.94884 * 359.49612 * 25 5 4 27 27 O 1.35682 * 119.62366 * 180.25145 * 26 25 5 28 28 N 1.31874 * 119.50920 * 305.01731 * 3 2 1 29 29 H 1.09002 * 109.46934 * 60.00508 * 1 2 3 30 30 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47562 * 300.00304 * 1 2 3 32 32 H 1.09004 * 109.47044 * 239.99395 * 2 1 3 33 33 H 1.09011 * 109.46955 * 120.00077 * 2 1 3 34 34 H 1.07994 * 120.43730 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47922 * 275.39624 * 9 8 6 36 36 H 1.09005 * 109.47365 * 35.39938 * 9 8 6 37 37 H 1.09002 * 109.47247 * 155.39404 * 9 8 6 38 38 H 1.09000 * 109.46732 * 329.99917 * 10 8 6 39 39 H 1.08995 * 109.47580 * 209.99808 * 10 8 6 40 40 H 0.96695 * 114.00494 * 59.99275 * 13 11 10 41 41 H 1.09002 * 109.47212 * 299.99865 * 14 11 10 42 42 H 1.09007 * 109.47490 * 59.99649 * 14 11 10 43 43 H 1.09001 * 109.47473 * 85.04611 * 16 15 14 44 44 H 1.09005 * 109.47095 * 205.05025 * 16 15 14 45 45 H 1.08996 * 109.47348 * 325.04665 * 16 15 14 46 46 H 0.96998 * 119.99721 * 180.02562 * 20 19 17 47 47 H 1.07998 * 120.52503 * 179.72369 * 25 5 4 48 48 H 0.96696 * 114.00340 * 270.25447 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9085 1.8322 0.9840 5 6 3.3695 3.1533 0.9766 6 6 4.3101 3.6366 2.0143 7 8 4.2251 4.7757 2.4285 8 7 5.2603 2.8126 2.4988 9 6 5.3149 1.4172 2.0561 10 6 6.2385 3.3123 3.4681 11 6 5.7009 3.1091 4.8861 12 1 4.7218 3.5800 4.9745 13 8 5.5829 1.7106 5.1550 14 6 6.6639 3.7423 5.8923 15 7 6.1489 3.5483 7.2500 16 6 6.5248 2.3552 8.0124 17 6 5.3162 4.4822 7.8064 18 1 4.6109 5.0149 7.1857 19 6 5.3786 4.7442 9.1681 20 7 6.3059 4.1722 9.9065 21 14 4.1466 5.9087 9.9525 22 1 3.2146 6.4166 8.9138 23 1 3.3777 5.1857 10.9972 24 1 4.8682 7.0503 10.5701 25 6 2.9145 4.0056 -0.0312 26 6 2.0370 3.5091 -0.9860 27 8 1.5902 4.3241 -1.9745 28 7 1.6280 2.2527 -0.9399 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.2340 1.1435 1.7495 35 1 4.6292 0.8186 2.6557 36 1 5.0269 1.3573 1.0065 37 1 6.3294 1.0372 2.1766 38 1 6.4124 4.3742 3.2942 39 1 7.1752 2.7671 3.3532 40 1 6.4178 1.2266 5.0943 41 1 7.6430 3.2714 5.8040 42 1 6.7541 4.8091 5.6873 43 1 7.4780 2.5284 8.5119 44 1 5.7575 2.1432 8.7571 45 1 6.6184 1.5060 7.3355 46 1 6.3492 4.3550 10.8582 47 1 3.2428 5.0338 -0.0698 48 1 0.7784 4.8011 -1.7543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717941537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:46 Heat of formation + Delta-G solvation = -55.842397 kcal Electronic energy + Delta-G solvation = -29638.877837 eV Core-core repulsion = 25502.691117 eV Total energy + Delta-G solvation = -4136.186721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.25347 -39.72932 -37.66725 -37.44829 -35.52791 -34.56951 -34.21361 -32.64004 -31.36326 -30.07706 -29.53769 -27.15803 -26.43516 -25.66382 -24.71366 -23.79222 -22.72996 -21.70631 -20.62099 -19.79433 -18.73348 -17.56373 -16.92088 -16.78979 -16.46730 -16.20137 -15.91970 -15.70071 -14.91413 -14.85219 -14.72113 -14.60844 -14.41333 -13.86771 -13.65217 -13.41379 -13.35412 -13.15555 -12.92161 -12.80763 -12.53223 -12.11233 -12.09403 -11.88350 -11.72823 -11.47351 -11.38797 -11.15802 -10.88592 -10.68564 -10.57501 -10.43141 -10.37307 -10.11116 -10.07371 -9.91672 -9.75974 -9.60322 -9.16061 -8.68329 -8.41817 -6.49944 -5.72453 -3.27780 0.44858 0.61122 2.51426 2.74165 3.13226 3.39002 3.41808 3.46259 3.49955 4.02107 4.12559 4.50671 4.54962 4.64656 4.70484 4.86100 4.87634 4.94851 4.98122 5.04817 5.11233 5.20546 5.32020 5.39320 5.42064 5.44621 5.51341 5.57029 5.66667 5.76075 5.78453 5.88793 5.89801 5.93758 6.03314 6.08208 6.39694 6.65205 6.75532 6.90787 7.10330 7.16551 7.40117 7.53312 7.70805 7.85980 7.94881 8.14390 8.51455 9.28703 9.87675 10.42865 11.32702 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.002562 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.564855 B =10924.404609 C =11218.798653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C 0.151 3.849 4 C -0.158 4.158 5 C -0.059 4.059 6 C 0.554 3.446 7 O -0.520 6.520 8 N -0.596 5.596 9 C 0.074 3.926 10 C 0.084 3.916 11 C 0.070 3.930 12 H 0.097 0.903 13 O -0.549 6.549 14 C 0.126 3.874 15 N -0.589 5.589 16 C 0.167 3.833 17 C -0.259 4.259 18 H 0.062 0.938 19 C 0.010 3.990 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.289 1.289 25 C -0.141 4.141 26 C 0.312 3.688 27 O -0.480 6.480 28 N -0.488 5.488 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.358 0.642 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.015 0.985 44 H 0.045 0.955 45 H 0.000 1.000 46 H 0.252 0.748 47 H 0.150 0.850 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 -9.275 -22.737 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.013 3.987 4 C -0.178 4.178 5 C -0.069 4.069 6 C 0.341 3.659 7 O -0.396 6.396 8 N -0.328 5.328 9 C -0.069 4.069 10 C -0.039 4.039 11 C 0.007 3.993 12 H 0.115 0.885 13 O -0.353 6.353 14 C -0.003 4.003 15 N -0.310 5.310 16 C 0.022 3.978 17 C -0.389 4.389 18 H 0.079 0.921 19 C -0.189 4.189 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.215 1.215 25 C -0.162 4.162 26 C 0.133 3.867 27 O -0.287 6.287 28 N -0.208 5.208 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.173 0.827 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.203 0.797 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.018 0.982 46 H 0.062 0.938 47 H 0.167 0.833 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.677 -8.915 -23.161 25.458 hybrid contribution 0.117 1.062 1.244 1.640 sum -5.560 -7.853 -21.917 23.936 Atomic orbital electron populations 1.21681 0.93859 1.01994 1.02745 1.20549 0.97336 0.89654 1.03604 1.20988 0.92489 0.95917 0.89265 1.22668 0.98462 0.95824 1.00855 1.20235 0.97344 0.93889 0.95478 1.18167 0.80796 0.85302 0.81667 1.90841 1.70666 1.18510 1.59558 1.47625 1.30816 1.11133 1.43178 1.22201 1.03363 0.81730 0.99565 1.22483 0.90417 1.01541 0.89467 1.23289 1.02779 0.82282 0.90917 0.88462 1.86628 1.35232 1.19964 1.93457 1.21297 0.93318 0.98815 0.86868 1.43575 1.55230 1.21375 1.10865 1.20716 0.98892 0.85248 0.92944 1.19148 1.12088 1.15789 0.91869 0.92078 1.25288 0.97422 0.98455 0.97706 1.70019 1.33611 1.45465 1.05650 0.86221 0.80700 0.80669 0.79223 1.20126 1.21571 1.21532 1.22165 0.99299 1.01655 0.93130 1.18914 0.93401 0.87248 0.87120 1.84785 1.46859 1.58153 1.38877 1.66756 1.25483 1.04048 1.24525 0.91618 0.92068 0.92710 0.89631 0.89724 0.82682 0.91330 0.91191 0.90658 0.88966 0.90193 0.79700 0.94476 0.92515 0.96714 0.93606 0.98168 0.93757 0.83263 0.73964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.77 37.16 0.36 -0.65 16 2 C -0.07 -0.50 6.33 -27.88 -0.18 -0.68 16 3 C 0.15 1.45 6.18 -82.65 -0.51 0.94 16 4 C -0.16 -1.55 7.28 -39.03 -0.28 -1.83 16 5 C -0.06 -0.70 5.33 -104.68 -0.56 -1.26 16 6 C 0.55 7.97 7.44 -12.18 -0.09 7.88 16 7 O -0.52 -9.50 16.51 5.36 0.09 -9.42 16 8 N -0.60 -7.30 2.84 -182.58 -0.52 -7.82 16 9 C 0.07 0.62 8.49 59.84 0.51 1.12 16 10 C 0.08 1.10 5.08 -4.04 -0.02 1.08 16 11 C 0.07 1.20 3.48 -26.73 -0.09 1.11 16 12 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 13 O -0.55 -8.90 11.54 -35.23 -0.41 -9.31 16 14 C 0.13 2.52 5.38 -4.04 -0.02 2.50 16 15 N -0.59 -14.95 2.81 -181.12 -0.51 -15.46 16 16 C 0.17 4.11 8.79 59.84 0.53 4.64 16 17 C -0.26 -7.35 9.53 -15.06 -0.14 -7.49 16 18 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 19 C 0.01 0.30 5.17 -17.43 -0.09 0.21 16 20 N -0.90 -26.84 11.12 55.49 0.62 -26.22 16 21 Si 0.90 22.44 29.56 -169.99 -5.02 17.41 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C -0.14 -1.60 9.66 -38.84 -0.38 -1.98 16 26 C 0.31 3.41 7.74 -17.16 -0.13 3.27 16 27 O -0.48 -4.42 13.56 -18.75 -0.25 -4.67 16 28 N -0.49 -5.41 9.87 -9.60 -0.09 -5.51 16 29 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.44 7.86 -51.92 -0.41 0.03 16 34 H 0.16 1.26 4.97 -52.49 -0.26 1.00 16 35 H 0.07 0.56 6.80 -51.93 -0.35 0.21 16 36 H 0.07 0.51 5.85 -51.93 -0.30 0.20 16 37 H 0.07 0.49 7.83 -51.93 -0.41 0.09 16 38 H 0.09 1.32 7.47 -51.93 -0.39 0.94 16 39 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 40 H 0.36 4.44 8.81 45.56 0.40 4.85 16 41 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.06 1.17 8.04 -51.93 -0.42 0.76 16 43 H 0.01 0.38 7.73 -51.93 -0.40 -0.02 16 44 H 0.05 1.24 7.26 -51.93 -0.38 0.86 16 45 H 0.00 0.00 6.81 -51.93 -0.35 -0.36 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.15 1.65 8.05 -52.49 -0.42 1.22 16 48 H 0.40 1.75 9.06 45.56 0.41 2.16 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -36.52 393.90 -7.02 -43.54 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.75 Total: 2.65 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.10 Total: 8.87 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.50 Total: -55.01 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.57 Total: -23.40 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.52 -7.02 -43.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717941537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.302 kcal (2) G-P(sol) polarization free energy of solvation -36.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds