Wall clock time and date at job start Tue Mar 31 2020 21:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47333 * 2 1 4 4 C 1.38021 * 119.51184 * 124.99590 * 3 2 1 5 5 C 1.39931 * 119.12741 * 180.02562 * 4 3 2 6 6 C 1.48160 * 120.89002 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00384 * 215.69167 * 6 5 4 8 8 N 1.34781 * 119.99837 * 35.69787 * 6 5 4 9 9 C 1.46494 * 119.99952 * 356.49345 * 8 6 5 10 10 C 1.46497 * 120.00144 * 176.50255 * 8 6 5 11 11 C 1.53003 * 109.47220 * 89.99546 * 10 8 6 12 12 H 1.09001 * 109.47145 * 304.99493 * 11 10 8 13 13 O 1.42894 * 109.47336 * 65.00564 * 11 10 8 14 14 C 1.53002 * 109.47129 * 185.00239 * 11 10 8 15 15 N 1.46499 * 109.47277 * 179.97438 * 14 11 10 16 16 C 1.46496 * 119.99798 * 90.00058 * 15 14 11 17 17 C 1.36939 * 119.99973 * 269.99939 * 15 14 11 18 18 H 1.07998 * 120.00031 * 34.46585 * 17 15 14 19 19 C 1.38813 * 119.99716 * 214.46866 * 17 15 14 20 20 N 1.31620 * 120.00056 * 5.23974 * 19 17 15 21 21 Si 1.86795 * 119.99736 * 185.23946 * 19 17 15 22 22 H 1.48504 * 109.47345 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47507 * 119.99971 * 21 19 17 24 24 H 1.48505 * 109.47160 * 239.99898 * 21 19 17 25 25 C 1.39609 * 118.21838 * 0.26075 * 5 4 3 26 26 C 1.38854 * 118.94884 * 359.49612 * 25 5 4 27 27 O 1.35682 * 119.62366 * 180.25145 * 26 25 5 28 28 N 1.31874 * 119.50920 * 305.01731 * 3 2 1 29 29 H 1.09002 * 109.46934 * 60.00508 * 1 2 3 30 30 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47562 * 300.00304 * 1 2 3 32 32 H 1.09004 * 109.47044 * 239.99395 * 2 1 3 33 33 H 1.09011 * 109.46955 * 120.00077 * 2 1 3 34 34 H 1.07994 * 120.43730 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47922 * 275.39624 * 9 8 6 36 36 H 1.09005 * 109.47365 * 35.39938 * 9 8 6 37 37 H 1.09002 * 109.47247 * 155.39404 * 9 8 6 38 38 H 1.09000 * 109.46732 * 329.99917 * 10 8 6 39 39 H 1.08995 * 109.47580 * 209.99808 * 10 8 6 40 40 H 0.96695 * 114.00494 * 59.99275 * 13 11 10 41 41 H 1.09002 * 109.47212 * 299.99865 * 14 11 10 42 42 H 1.09007 * 109.47490 * 59.99649 * 14 11 10 43 43 H 1.09001 * 109.47473 * 85.04611 * 16 15 14 44 44 H 1.09005 * 109.47095 * 205.05025 * 16 15 14 45 45 H 1.08996 * 109.47348 * 325.04665 * 16 15 14 46 46 H 0.96998 * 119.99721 * 180.02562 * 20 19 17 47 47 H 1.07998 * 120.52503 * 179.72369 * 25 5 4 48 48 H 0.96696 * 114.00340 * 270.25447 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9085 1.8322 0.9840 5 6 3.3695 3.1533 0.9766 6 6 4.3101 3.6366 2.0143 7 8 4.2251 4.7757 2.4285 8 7 5.2603 2.8126 2.4988 9 6 5.3149 1.4172 2.0561 10 6 6.2385 3.3123 3.4681 11 6 5.7009 3.1091 4.8861 12 1 4.7218 3.5800 4.9745 13 8 5.5829 1.7106 5.1550 14 6 6.6639 3.7423 5.8923 15 7 6.1489 3.5483 7.2500 16 6 6.5248 2.3552 8.0124 17 6 5.3162 4.4822 7.8064 18 1 4.6109 5.0149 7.1857 19 6 5.3786 4.7442 9.1681 20 7 6.3059 4.1722 9.9065 21 14 4.1466 5.9087 9.9525 22 1 3.2146 6.4166 8.9138 23 1 3.3777 5.1857 10.9972 24 1 4.8682 7.0503 10.5701 25 6 2.9145 4.0056 -0.0312 26 6 2.0370 3.5091 -0.9860 27 8 1.5902 4.3241 -1.9745 28 7 1.6280 2.2527 -0.9399 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.2340 1.1435 1.7495 35 1 4.6292 0.8186 2.6557 36 1 5.0269 1.3573 1.0065 37 1 6.3294 1.0372 2.1766 38 1 6.4124 4.3742 3.2942 39 1 7.1752 2.7671 3.3532 40 1 6.4178 1.2266 5.0943 41 1 7.6430 3.2714 5.8040 42 1 6.7541 4.8091 5.6873 43 1 7.4780 2.5284 8.5119 44 1 5.7575 2.1432 8.7571 45 1 6.6184 1.5060 7.3355 46 1 6.3492 4.3550 10.8582 47 1 3.2428 5.0338 -0.0698 48 1 0.7784 4.8011 -1.7543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717941537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:45 Heat of formation + Delta-G solvation = -86.247296 kcal Electronic energy + Delta-G solvation = -29640.196293 eV Core-core repulsion = 25502.691117 eV Total energy + Delta-G solvation = -4137.505176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11852 -40.73227 -38.92388 -38.34462 -36.91197 -36.10758 -34.93411 -33.50632 -33.26096 -31.29215 -30.46295 -28.16321 -27.83619 -27.54557 -25.65176 -24.62781 -23.94016 -22.82129 -22.29044 -20.68152 -19.57989 -18.82718 -18.38279 -17.83198 -17.43083 -17.28279 -17.08591 -16.77632 -16.59592 -16.11378 -15.98919 -15.43161 -15.26716 -15.14530 -14.97557 -14.75061 -14.51329 -14.19961 -14.12374 -13.77913 -13.53746 -13.25552 -13.06617 -12.88661 -12.83309 -12.78362 -12.58644 -12.49256 -12.29259 -12.25252 -12.11072 -11.99492 -11.92273 -11.81076 -11.51869 -11.25182 -10.97419 -10.65101 -10.47865 -9.92784 -9.70547 -8.53687 -7.87248 -5.45837 -0.42065 -0.16722 1.40286 1.41544 1.51639 1.52701 1.77823 2.36296 2.46125 2.63371 3.15635 3.25834 3.41886 3.55453 3.72540 3.79946 3.83776 4.00758 4.15570 4.17475 4.25391 4.28472 4.36606 4.43768 4.49301 4.53501 4.64580 4.69262 4.75016 4.81788 4.85253 4.93604 4.97240 5.03177 5.09720 5.21548 5.22187 5.30324 5.37969 5.43080 5.47858 5.60893 5.67869 6.17728 6.37531 6.50312 6.78144 6.89923 7.04237 7.16244 7.86071 8.32391 9.14062 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.002562 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.564855 B =10924.404609 C =11218.798653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C 0.152 3.848 4 C -0.150 4.150 5 C -0.070 4.070 6 C 0.547 3.453 7 O -0.573 6.573 8 N -0.591 5.591 9 C 0.066 3.934 10 C 0.093 3.907 11 C 0.094 3.906 12 H 0.048 0.952 13 O -0.557 6.557 14 C 0.122 3.878 15 N -0.609 5.609 16 C 0.182 3.818 17 C -0.269 4.269 18 H 0.049 0.951 19 C -0.041 4.041 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.285 1.285 25 C -0.152 4.152 26 C 0.312 3.688 27 O -0.487 6.487 28 N -0.501 5.501 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.175 0.825 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.380 0.620 41 H 0.069 0.931 42 H 0.041 0.959 43 H -0.006 1.006 44 H 0.011 0.989 45 H 0.041 0.959 46 H 0.251 0.749 47 H 0.144 0.856 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -11.550 -24.197 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.014 3.986 4 C -0.170 4.170 5 C -0.081 4.081 6 C 0.335 3.665 7 O -0.453 6.453 8 N -0.321 5.321 9 C -0.075 4.075 10 C -0.031 4.031 11 C 0.031 3.969 12 H 0.066 0.934 13 O -0.363 6.363 14 C -0.005 4.005 15 N -0.332 5.332 16 C 0.037 3.963 17 C -0.400 4.400 18 H 0.066 0.934 19 C -0.237 4.237 20 N -0.576 5.576 21 Si 0.791 3.209 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.175 4.175 26 C 0.133 3.867 27 O -0.297 6.297 28 N -0.222 5.222 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.192 0.808 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.012 0.988 44 H 0.029 0.971 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.161 0.839 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -5.442 -11.229 -24.673 27.648 hybrid contribution 0.035 1.693 1.609 2.336 sum -5.407 -9.536 -23.063 25.536 Atomic orbital electron populations 1.21668 0.94077 1.02816 1.01603 1.20696 0.97041 0.87962 1.05347 1.21507 0.91722 0.96935 0.88452 1.22840 0.97997 0.94996 1.01144 1.20126 0.97720 0.95059 0.95186 1.18627 0.81190 0.84880 0.81816 1.90808 1.72239 1.20830 1.61437 1.47715 1.29689 1.12586 1.42088 1.22506 1.05459 0.79155 1.00386 1.22299 0.91987 1.01645 0.87121 1.22650 0.99291 0.82373 0.92582 0.93412 1.86586 1.37046 1.19125 1.93591 1.21499 0.95373 0.98765 0.84833 1.43802 1.55330 1.21243 1.12805 1.20487 0.96455 0.86416 0.92909 1.19309 1.12457 1.16026 0.92211 0.93376 1.25968 0.99338 1.00180 0.98216 1.70145 1.35093 1.46732 1.05629 0.85283 0.78673 0.78790 0.78188 1.19891 1.21239 1.21128 1.22176 0.99980 1.01559 0.93742 1.18947 0.93228 0.87525 0.87036 1.84731 1.48196 1.58228 1.38546 1.66863 1.25853 1.04174 1.25281 0.92952 0.90279 0.93664 0.88374 0.87427 0.80754 0.90644 0.89877 0.87872 0.90611 0.85722 0.77192 0.91263 0.94047 0.98773 0.97052 0.94066 0.93999 0.83859 0.71708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.77 71.98 0.70 -1.00 16 2 C -0.07 -0.78 6.33 29.85 0.19 -0.59 16 3 C 0.15 2.60 6.18 42.50 0.26 2.86 16 4 C -0.15 -2.64 7.28 22.63 0.16 -2.47 16 5 C -0.07 -1.64 5.33 -19.90 -0.11 -1.75 16 6 C 0.55 15.76 7.44 86.88 0.65 16.40 16 7 O -0.57 -21.95 16.51 -3.75 -0.06 -22.02 16 8 N -0.59 -13.42 2.84 -849.85 -2.41 -15.83 16 9 C 0.07 0.85 8.49 127.77 1.08 1.93 16 10 C 0.09 2.26 5.08 86.38 0.44 2.70 16 11 C 0.09 3.12 3.48 30.60 0.11 3.23 16 12 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 13 O -0.56 -16.49 11.54 -148.98 -1.72 -18.21 16 14 C 0.12 4.80 5.38 86.38 0.47 5.27 16 15 N -0.61 -31.04 2.81 -726.93 -2.04 -33.08 16 16 C 0.18 8.92 8.79 127.77 1.12 10.04 16 17 C -0.27 -15.61 9.53 84.03 0.80 -14.80 16 18 H 0.05 2.86 7.83 -2.91 -0.02 2.84 16 19 C -0.04 -2.37 5.17 84.86 0.44 -1.93 16 20 N -0.93 -56.17 11.12 21.65 0.24 -55.93 16 21 Si 0.96 46.96 29.56 68.60 2.03 48.99 16 22 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 25 C -0.15 -3.53 9.66 22.75 0.22 -3.31 16 26 C 0.31 6.66 7.74 84.78 0.66 7.32 16 27 O -0.49 -8.73 13.56 -90.00 -1.22 -9.95 16 28 N -0.50 -10.51 9.87 -297.16 -2.93 -13.44 16 29 H 0.05 0.76 7.94 -2.39 -0.02 0.74 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 0.68 7.86 -2.38 -0.02 0.66 16 34 H 0.18 2.29 4.97 -2.91 -0.01 2.27 16 35 H 0.08 0.92 6.80 -2.39 -0.02 0.91 16 36 H 0.08 0.90 5.85 -2.38 -0.01 0.89 16 37 H 0.10 0.81 7.83 -2.39 -0.02 0.79 16 38 H 0.08 2.15 7.47 -2.39 -0.02 2.13 16 39 H 0.12 1.96 7.86 -2.39 -0.02 1.94 16 40 H 0.38 7.67 8.81 -74.06 -0.65 7.02 16 41 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 42 H 0.04 1.73 8.04 -2.38 -0.02 1.71 16 43 H -0.01 -0.32 7.73 -2.39 -0.02 -0.33 16 44 H 0.01 0.59 7.26 -2.38 -0.02 0.57 16 45 H 0.04 1.64 6.81 -2.39 -0.02 1.62 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.14 3.37 8.05 -2.91 -0.02 3.34 16 48 H 0.42 3.46 9.06 -74.06 -0.67 2.79 16 Total: -1.00 -82.58 393.90 -1.25 -83.83 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -0.33 Total: 11.75 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 7.19 Total: 23.90 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -7.14 Total: -118.29 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -3.00 Total: -50.18 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -82.58 -1.25 -83.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717941537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.416 kcal (2) G-P(sol) polarization free energy of solvation -82.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds