Wall clock time and date at job start Tue Mar 31 2020 19:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34335 * 126.44319 * 2 1 4 4 N 1.34471 * 107.66719 * 179.77167 * 3 2 1 5 5 C 1.30258 * 108.70455 * 0.42141 * 4 3 2 6 6 C 1.50695 * 125.61952 * 179.84218 * 5 4 3 7 7 O 1.42897 * 109.47207 * 89.69679 * 6 5 4 8 8 C 1.42901 * 113.99927 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47164 * 179.97438 * 8 7 6 10 10 O 1.21272 * 119.99817 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00057 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00120 * 180.02562 * 11 9 8 13 13 C 1.53009 * 109.45962 * 299.97427 * 12 11 9 14 14 C 1.53033 * 109.46288 * 179.97438 * 12 11 9 15 15 C 1.53186 * 109.34172 * 301.34301 * 14 12 11 16 16 N 1.46938 * 108.77099 * 305.41258 * 15 14 12 17 17 C 1.36930 * 120.60307 * 233.57330 * 16 15 14 18 18 H 1.08001 * 120.00330 * 27.66765 * 17 16 15 19 19 C 1.38816 * 120.00154 * 207.65921 * 17 16 15 20 20 N 1.31623 * 119.99748 * 17.35845 * 19 17 16 21 21 Si 1.86801 * 120.00255 * 197.36421 * 19 17 16 22 22 H 1.48499 * 109.47108 * 59.99538 * 21 19 17 23 23 H 1.48501 * 109.47078 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46872 * 299.99914 * 21 19 17 25 25 C 1.46924 * 118.76259 * 53.55677 * 16 15 14 26 26 C 1.53047 * 109.44869 * 59.93401 * 12 11 9 27 27 O 1.33972 * 108.75763 * 359.57679 * 5 4 3 28 28 H 1.08996 * 109.46772 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46898 * 299.99778 * 1 2 3 30 30 H 1.08997 * 109.47116 * 59.99792 * 1 2 3 31 31 H 1.07996 * 126.16230 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47436 * 329.69194 * 6 5 4 33 33 H 1.09004 * 109.47056 * 209.69358 * 6 5 4 34 34 H 1.08999 * 109.47492 * 59.99795 * 8 7 6 35 35 H 1.09000 * 109.47253 * 299.99557 * 8 7 6 36 36 H 0.97001 * 119.99820 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46533 * 300.02764 * 13 12 11 38 38 H 1.08997 * 109.46804 * 60.02318 * 13 12 11 39 39 H 1.08995 * 109.46796 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.49433 * 61.30834 * 14 12 11 41 41 H 1.08999 * 109.49960 * 181.37449 * 14 12 11 42 42 H 1.09008 * 109.58620 * 65.16310 * 15 14 12 43 43 H 1.08997 * 109.58931 * 185.58863 * 15 14 12 44 44 H 0.96998 * 119.99441 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.58361 * 186.62379 * 25 16 15 46 46 H 1.09000 * 109.70598 * 66.26871 * 25 16 15 47 47 H 1.08999 * 109.49333 * 178.60019 * 26 12 11 48 48 H 1.08993 * 109.49940 * 298.66883 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5766 -0.6547 -0.0009 6 6 4.8005 -1.5339 -0.0015 7 8 5.1877 -1.8122 1.3456 8 6 6.3444 -2.6438 1.4578 9 6 6.6609 -2.8704 2.9137 10 8 5.9647 -2.3687 3.7707 11 7 7.7175 -3.6305 3.2633 12 6 8.0248 -3.8513 4.6785 13 6 8.2964 -2.5069 5.3569 14 6 9.2628 -4.7428 4.7985 15 6 8.9996 -6.0747 4.0891 16 7 7.7724 -6.6682 4.6377 17 6 7.7743 -7.9479 5.1247 18 1 8.6831 -8.3718 5.5258 19 6 6.6081 -8.7006 5.1030 20 7 5.6072 -8.3411 4.3275 21 14 6.4592 -10.2235 6.1745 22 1 6.6134 -9.8418 7.6013 23 1 5.1262 -10.8449 5.9690 24 1 7.5199 -11.1946 5.8045 25 6 6.5438 -5.8627 4.6543 26 6 6.8353 -4.5339 5.3578 27 8 2.3075 -1.0840 -0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.9822 2.1112 0.0004 32 1 5.6147 -1.0230 -0.5154 33 1 4.5762 -2.4686 -0.5155 34 1 7.1908 -2.1562 0.9740 35 1 6.1517 -3.6014 0.9742 36 1 8.2741 -4.0320 2.5778 37 1 9.1427 -2.0200 4.8724 38 1 7.4144 -1.8722 5.2715 39 1 8.5255 -2.6711 6.4098 40 1 10.1151 -4.2460 4.3349 41 1 9.4776 -4.9274 5.8510 42 1 8.8747 -5.9010 3.0202 43 1 9.8389 -6.7498 4.2560 44 1 4.7922 -8.8669 4.3126 45 1 5.7630 -6.3984 5.1941 46 1 6.2161 -5.6711 3.6325 47 1 7.0727 -4.7210 6.4051 48 1 5.9596 -3.8883 5.2930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724013416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:57 Heat of formation + Delta-G solvation = -27.693166 kcal Electronic energy + Delta-G solvation = -29718.364321 eV Core-core repulsion = 25583.398242 eV Total energy + Delta-G solvation = -4134.966078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.53437 -40.11458 -38.27266 -36.94314 -34.93621 -34.37206 -33.00908 -32.09994 -31.01345 -29.89016 -29.67397 -27.43478 -27.24408 -25.32517 -24.06361 -22.52770 -22.27701 -21.41225 -21.29479 -20.39217 -18.66788 -17.74234 -17.38938 -16.96085 -16.66617 -16.31963 -16.19704 -15.03721 -14.90938 -14.77688 -14.61399 -14.19009 -13.92930 -13.72104 -13.45073 -13.42243 -13.27014 -13.23826 -13.09318 -12.70006 -12.53919 -12.22116 -12.06699 -11.77592 -11.58695 -11.51175 -11.39659 -11.09945 -10.92360 -10.75485 -10.70502 -10.39001 -10.23829 -10.01438 -9.95562 -9.70516 -9.55424 -9.08001 -8.93004 -8.57821 -8.44192 -6.66276 -5.77497 -3.20095 1.09457 2.20166 2.45666 2.92218 3.10209 3.38627 3.45033 3.46100 3.70771 4.24905 4.46474 4.50290 4.70943 4.72457 4.80655 4.93240 5.02236 5.05199 5.11241 5.19630 5.26823 5.31461 5.36090 5.43513 5.54452 5.60218 5.61716 5.81258 5.96439 6.03300 6.04356 6.13859 6.20483 6.38341 6.46647 6.54955 6.65585 6.67707 6.75066 6.85775 6.93627 7.10923 7.42939 7.49770 7.71817 7.80525 7.89514 8.46031 8.58406 9.22330 9.85962 10.42269 11.30370 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.002581 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.175236 B =10847.347217 C =12194.515449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.047 4.047 4 N -0.460 5.460 5 C 0.191 3.809 6 C 0.160 3.840 7 O -0.355 6.355 8 C 0.044 3.956 9 C 0.517 3.483 10 O -0.517 6.517 11 N -0.709 5.709 12 C 0.187 3.813 13 C -0.161 4.161 14 C -0.137 4.137 15 C 0.146 3.854 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.178 3.822 26 C -0.153 4.153 27 O -0.192 6.192 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.185 0.815 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.397 0.603 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.014 0.986 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.084 0.916 46 H 0.015 0.985 47 H 0.059 0.941 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 16.248 -11.018 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.186 4.186 4 N -0.191 5.191 5 C -0.016 4.016 6 C 0.082 3.918 7 O -0.272 6.272 8 C -0.036 4.036 9 C 0.302 3.698 10 O -0.392 6.392 11 N -0.362 5.362 12 C 0.102 3.898 13 C -0.219 4.219 14 C -0.177 4.177 15 C 0.019 3.981 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.053 3.947 26 C -0.192 4.192 27 O -0.078 6.078 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.202 0.798 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.232 0.768 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.034 0.966 47 H 0.078 0.922 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.341 16.867 -10.237 19.869 hybrid contribution -0.367 -1.454 -0.031 1.500 sum -2.708 15.413 -10.268 18.717 Atomic orbital electron populations 1.20315 0.83799 1.04634 1.03938 1.23582 0.95217 0.84548 1.05934 1.23087 0.87649 1.00479 1.07397 1.70405 1.23269 1.09074 1.16339 1.25540 0.83916 0.89882 1.02253 1.20479 0.88928 0.96455 0.85908 1.88077 1.45833 1.69730 1.23556 1.22322 0.89015 0.95942 0.96312 1.19896 0.80947 0.79183 0.89792 1.90666 1.48563 1.48807 1.51168 1.45958 1.29979 1.51365 1.08933 1.20271 0.96119 0.94085 0.79334 1.22236 1.02048 0.97521 1.00113 1.22336 0.95052 0.97620 1.02659 1.20865 0.91022 0.92072 0.94140 1.44069 1.05103 1.11753 1.70462 1.19122 0.96682 0.89443 1.33167 0.91796 1.25033 0.98111 0.97815 0.98638 1.70031 1.06102 1.40512 1.37835 0.86386 0.76851 0.82835 0.80775 1.21046 1.21676 1.20939 1.20666 0.89608 0.87478 0.96965 1.22588 0.97402 0.99584 0.99659 1.84418 1.17726 1.36561 1.69136 0.90145 0.89069 0.89242 0.79772 0.88544 0.89811 0.90028 0.89557 0.76834 0.93454 0.90781 0.92216 0.92588 0.90660 0.96870 0.92616 0.93623 0.89788 0.96640 0.92190 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 36.01 0.38 -0.05 16 2 C -0.04 -0.42 7.39 -35.68 -0.26 -0.68 16 3 C -0.05 -0.52 11.80 -17.77 -0.21 -0.73 16 4 N -0.46 -6.37 11.29 -11.10 -0.13 -6.50 16 5 C 0.19 2.55 7.97 -12.95 -0.10 2.45 16 6 C 0.16 1.74 6.56 36.00 0.24 1.97 16 7 O -0.35 -5.20 9.86 -55.14 -0.54 -5.75 16 8 C 0.04 0.54 6.42 36.01 0.23 0.77 16 9 C 0.52 8.46 7.33 -10.98 -0.08 8.38 16 10 O -0.52 -10.57 12.72 -14.35 -0.18 -10.75 16 11 N -0.71 -10.80 4.10 -47.57 -0.20 -10.99 16 12 C 0.19 3.15 0.66 -131.78 -0.09 3.06 16 13 C -0.16 -2.49 8.40 37.16 0.31 -2.18 16 14 C -0.14 -2.21 4.96 -26.62 -0.13 -2.34 16 15 C 0.15 2.82 6.24 -3.71 -0.02 2.80 16 16 N -0.59 -14.40 2.99 -172.34 -0.52 -14.92 16 17 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 18 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 20 N -0.90 -26.20 11.19 55.49 0.62 -25.58 16 21 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.18 4.33 5.05 -3.73 -0.02 4.31 16 26 C -0.15 -3.15 4.66 -26.63 -0.12 -3.27 16 27 O -0.19 -2.56 10.78 5.35 0.06 -2.51 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.19 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 5.10 7.27 -40.82 -0.30 4.80 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.29 6.17 -51.93 -0.32 0.97 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.01 0.25 6.94 -51.92 -0.36 -0.11 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.08 2.34 6.04 -51.93 -0.31 2.03 16 46 H 0.02 0.40 7.74 -51.93 -0.40 -0.01 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.07 1.57 6.20 -51.93 -0.32 1.24 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -35.98 386.45 -7.68 -43.66 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.47 Total: 3.37 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.12 Total: 7.45 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.22 Total: -57.99 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.67 Total: -19.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.98 -7.68 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724013416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.963 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds