Wall clock time and date at job start Tue Mar 31 2020 19:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34335 * 126.44319 * 2 1 4 4 N 1.34471 * 107.66719 * 179.77167 * 3 2 1 5 5 C 1.30258 * 108.70455 * 0.42141 * 4 3 2 6 6 C 1.50695 * 125.61952 * 179.84218 * 5 4 3 7 7 O 1.42897 * 109.47207 * 89.69679 * 6 5 4 8 8 C 1.42901 * 113.99927 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47164 * 179.97438 * 8 7 6 10 10 O 1.21272 * 119.99817 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00057 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00120 * 180.02562 * 11 9 8 13 13 C 1.53009 * 109.45962 * 299.97427 * 12 11 9 14 14 C 1.53033 * 109.46288 * 179.97438 * 12 11 9 15 15 C 1.53186 * 109.34172 * 301.34301 * 14 12 11 16 16 N 1.46938 * 108.77099 * 305.41258 * 15 14 12 17 17 C 1.36930 * 120.60307 * 233.57330 * 16 15 14 18 18 H 1.08001 * 120.00330 * 27.66765 * 17 16 15 19 19 C 1.38816 * 120.00154 * 207.65921 * 17 16 15 20 20 N 1.31623 * 119.99748 * 17.35845 * 19 17 16 21 21 Si 1.86801 * 120.00255 * 197.36421 * 19 17 16 22 22 H 1.48499 * 109.47108 * 59.99538 * 21 19 17 23 23 H 1.48501 * 109.47078 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46872 * 299.99914 * 21 19 17 25 25 C 1.46924 * 118.76259 * 53.55677 * 16 15 14 26 26 C 1.53047 * 109.44869 * 59.93401 * 12 11 9 27 27 O 1.33972 * 108.75763 * 359.57679 * 5 4 3 28 28 H 1.08996 * 109.46772 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46898 * 299.99778 * 1 2 3 30 30 H 1.08997 * 109.47116 * 59.99792 * 1 2 3 31 31 H 1.07996 * 126.16230 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47436 * 329.69194 * 6 5 4 33 33 H 1.09004 * 109.47056 * 209.69358 * 6 5 4 34 34 H 1.08999 * 109.47492 * 59.99795 * 8 7 6 35 35 H 1.09000 * 109.47253 * 299.99557 * 8 7 6 36 36 H 0.97001 * 119.99820 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46533 * 300.02764 * 13 12 11 38 38 H 1.08997 * 109.46804 * 60.02318 * 13 12 11 39 39 H 1.08995 * 109.46796 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.49433 * 61.30834 * 14 12 11 41 41 H 1.08999 * 109.49960 * 181.37449 * 14 12 11 42 42 H 1.09008 * 109.58620 * 65.16310 * 15 14 12 43 43 H 1.08997 * 109.58931 * 185.58863 * 15 14 12 44 44 H 0.96998 * 119.99441 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.58361 * 186.62379 * 25 16 15 46 46 H 1.09000 * 109.70598 * 66.26871 * 25 16 15 47 47 H 1.08999 * 109.49333 * 178.60019 * 26 12 11 48 48 H 1.08993 * 109.49940 * 298.66883 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5766 -0.6547 -0.0009 6 6 4.8005 -1.5339 -0.0015 7 8 5.1877 -1.8122 1.3456 8 6 6.3444 -2.6438 1.4578 9 6 6.6609 -2.8704 2.9137 10 8 5.9647 -2.3687 3.7707 11 7 7.7175 -3.6305 3.2633 12 6 8.0248 -3.8513 4.6785 13 6 8.2964 -2.5069 5.3569 14 6 9.2628 -4.7428 4.7985 15 6 8.9996 -6.0747 4.0891 16 7 7.7724 -6.6682 4.6377 17 6 7.7743 -7.9479 5.1247 18 1 8.6831 -8.3718 5.5258 19 6 6.6081 -8.7006 5.1030 20 7 5.6072 -8.3411 4.3275 21 14 6.4592 -10.2235 6.1745 22 1 6.6134 -9.8418 7.6013 23 1 5.1262 -10.8449 5.9690 24 1 7.5199 -11.1946 5.8045 25 6 6.5438 -5.8627 4.6543 26 6 6.8353 -4.5339 5.3578 27 8 2.3075 -1.0840 -0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.9822 2.1112 0.0004 32 1 5.6147 -1.0230 -0.5154 33 1 4.5762 -2.4686 -0.5155 34 1 7.1908 -2.1562 0.9740 35 1 6.1517 -3.6014 0.9742 36 1 8.2741 -4.0320 2.5778 37 1 9.1427 -2.0200 4.8724 38 1 7.4144 -1.8722 5.2715 39 1 8.5255 -2.6711 6.4098 40 1 10.1151 -4.2460 4.3349 41 1 9.4776 -4.9274 5.8510 42 1 8.8747 -5.9010 3.0202 43 1 9.8389 -6.7498 4.2560 44 1 4.7922 -8.8669 4.3126 45 1 5.7630 -6.3984 5.1941 46 1 6.2161 -5.6711 3.6325 47 1 7.0727 -4.7210 6.4051 48 1 5.9596 -3.8883 5.2930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724013416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:56 Heat of formation + Delta-G solvation = -54.530948 kcal Electronic energy + Delta-G solvation = -29719.528094 eV Core-core repulsion = 25583.398242 eV Total energy + Delta-G solvation = -4136.129852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.41217 -41.44997 -39.43351 -38.30620 -36.08186 -35.85471 -33.80454 -33.64033 -32.61659 -31.59217 -30.50251 -29.08664 -28.20814 -26.11767 -25.89154 -23.92955 -23.39384 -22.88420 -22.20308 -21.82782 -20.17182 -18.89361 -18.67254 -18.21499 -17.80850 -17.27863 -17.20572 -16.82570 -16.11267 -16.03953 -15.74886 -15.56758 -15.31679 -15.14184 -14.85856 -14.68144 -14.53786 -14.16852 -14.01692 -13.88795 -13.41441 -13.31878 -13.21488 -13.15401 -12.97527 -12.94592 -12.77970 -12.55725 -12.51313 -12.46144 -12.25583 -11.96791 -11.73667 -11.67000 -11.31138 -11.29697 -10.89516 -10.51250 -10.44602 -9.94864 -9.76607 -8.65296 -7.85826 -5.30194 0.22382 1.36017 1.45453 1.48921 1.54696 1.63664 1.69561 2.05385 2.51656 2.83750 3.28674 3.32336 3.66882 3.75023 3.76981 3.93364 4.00510 4.07564 4.09644 4.14776 4.18327 4.23230 4.32695 4.46680 4.50772 4.60378 4.66379 4.69032 4.72413 4.82656 4.89372 4.96476 4.97698 5.06215 5.13618 5.16657 5.22996 5.25227 5.36371 5.38635 5.51740 5.63923 5.68536 5.76841 5.86725 6.39724 6.61218 6.70558 7.15876 7.37774 7.89064 8.39957 9.19632 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.002581 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.175236 B =10847.347217 C =12194.515449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.042 4.042 3 C -0.065 4.065 4 N -0.486 5.486 5 C 0.165 3.835 6 C 0.158 3.842 7 O -0.395 6.395 8 C 0.048 3.952 9 C 0.508 3.492 10 O -0.566 6.566 11 N -0.701 5.701 12 C 0.189 3.811 13 C -0.151 4.151 14 C -0.123 4.123 15 C 0.139 3.861 16 N -0.608 5.608 17 C -0.259 4.259 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.934 5.934 21 Si 0.963 3.037 22 H -0.282 1.282 23 H -0.298 1.298 24 H -0.271 1.271 25 C 0.194 3.806 26 C -0.141 4.141 27 O -0.213 6.213 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.213 0.787 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.060 0.940 44 H 0.247 0.753 45 H 0.038 0.962 46 H -0.004 1.004 47 H 0.052 0.948 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 17.116 -12.025 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.095 4.095 3 C -0.203 4.203 4 N -0.217 5.217 5 C -0.041 4.041 6 C 0.082 3.918 7 O -0.313 6.313 8 C -0.030 4.030 9 C 0.294 3.706 10 O -0.445 6.445 11 N -0.355 5.355 12 C 0.103 3.897 13 C -0.209 4.209 14 C -0.162 4.162 15 C 0.014 3.986 16 N -0.331 5.331 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.249 4.249 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.208 1.208 23 H -0.225 1.225 24 H -0.197 1.197 25 C 0.068 3.932 26 C -0.181 4.181 27 O -0.100 6.100 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.230 0.770 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.249 0.751 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.014 0.986 47 H 0.071 0.929 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.480 17.734 -11.272 21.019 hybrid contribution -0.961 -1.671 0.268 1.946 sum -1.441 16.063 -11.005 19.524 Atomic orbital electron populations 1.20560 0.80719 1.05264 1.05957 1.24471 0.96912 0.83849 1.04281 1.23631 0.86969 1.02035 1.07692 1.70376 1.24819 1.09592 1.16914 1.26111 0.84605 0.90298 1.03048 1.20796 0.88949 0.97538 0.84558 1.88007 1.46934 1.70328 1.26034 1.22408 0.90047 0.97197 0.93398 1.20722 0.80240 0.78210 0.91414 1.90648 1.50095 1.50762 1.52968 1.45863 1.30067 1.50982 1.08602 1.20162 0.94527 0.94786 0.80182 1.22115 1.01995 0.96051 1.00753 1.22208 0.95873 0.95623 1.02491 1.21110 0.88789 0.93552 0.95118 1.44280 1.06480 1.11238 1.71131 1.19493 0.96727 0.90328 1.32388 0.91223 1.25777 0.98136 1.00882 1.00097 1.70191 1.06403 1.41783 1.39660 0.85405 0.76520 0.79865 0.79071 1.20824 1.22461 1.19673 1.20285 0.88907 0.88569 0.95402 1.22386 0.98836 0.97577 0.99298 1.84420 1.18270 1.37875 1.69456 0.90190 0.87496 0.86542 0.76990 0.85833 0.87657 0.85565 0.87821 0.75136 0.90732 0.93149 0.91475 0.88131 0.91040 0.95352 0.92106 0.94443 0.94341 0.98586 0.92929 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.43 71.24 0.74 0.01 16 2 C -0.04 -0.88 7.39 24.79 0.18 -0.70 16 3 C -0.06 -1.41 11.80 83.40 0.98 -0.42 16 4 N -0.49 -13.44 11.29 -303.83 -3.43 -16.88 16 5 C 0.17 4.45 7.97 88.34 0.70 5.15 16 6 C 0.16 3.29 6.56 71.23 0.47 3.76 16 7 O -0.39 -11.41 9.86 -129.94 -1.28 -12.69 16 8 C 0.05 1.09 6.42 71.24 0.46 1.55 16 9 C 0.51 16.25 7.33 87.66 0.64 16.89 16 10 O -0.57 -23.72 12.72 16.03 0.20 -23.51 16 11 N -0.70 -20.07 4.10 -422.80 -1.73 -21.80 16 12 C 0.19 6.08 0.66 3.63 0.00 6.08 16 13 C -0.15 -4.36 8.40 71.99 0.60 -3.76 16 14 C -0.12 -3.55 4.96 30.67 0.15 -3.40 16 15 C 0.14 5.08 6.24 86.36 0.54 5.62 16 16 N -0.61 -29.56 2.99 -699.16 -2.09 -31.66 16 17 C -0.26 -14.04 9.58 84.04 0.81 -13.23 16 18 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 19 C -0.05 -3.02 4.91 84.86 0.42 -2.60 16 20 N -0.93 -56.18 11.19 21.65 0.24 -55.93 16 21 Si 0.96 45.33 29.59 68.60 2.03 47.36 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C 0.19 9.73 5.05 86.35 0.44 10.16 16 26 C -0.14 -5.94 4.66 30.66 0.14 -5.80 16 27 O -0.21 -5.78 10.78 -3.76 -0.04 -5.82 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.21 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 9.29 7.27 -92.71 -0.67 8.61 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.73 6.17 -2.39 -0.01 1.72 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.03 0.97 6.94 -2.38 -0.02 0.95 16 43 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 45 H 0.04 2.26 6.04 -2.39 -0.01 2.24 16 46 H 0.00 -0.21 7.74 -2.39 -0.02 -0.23 16 47 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.05 2.40 6.20 -2.39 -0.01 2.38 16 Total: -1.00 -82.96 386.45 1.48 -81.49 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.30 Total: 20.13 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 7.28 Total: 19.32 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -7.02 Total: -126.27 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.12 Total: -42.02 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -82.96 1.48 -81.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724013416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.956 kcal (2) G-P(sol) polarization free energy of solvation -82.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds