Wall clock time and date at job start Tue Mar 31 2020 19:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34327 * 126.44311 * 2 1 4 4 N 1.34476 * 107.67044 * 179.76498 * 3 2 1 5 5 C 1.30254 * 108.70248 * 0.42872 * 4 3 2 6 6 C 1.50700 * 125.62623 * 179.83761 * 5 4 3 7 7 O 1.42896 * 109.47073 * 89.68646 * 6 5 4 8 8 C 1.42902 * 113.99739 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46970 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00183 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99820 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.63423 * 359.71882 * 11 9 8 13 13 C 1.53624 * 108.54394 * 126.36414 * 12 11 9 14 14 C 1.53045 * 109.24098 * 54.86125 * 13 12 11 15 15 N 1.46493 * 109.46200 * 178.48959 * 14 13 12 16 16 C 1.46505 * 120.00178 * 60.06850 * 15 14 13 17 17 C 1.36933 * 120.00264 * 240.06768 * 15 14 13 18 18 H 1.08005 * 119.99596 * 20.40112 * 17 15 14 19 19 C 1.38805 * 120.00504 * 200.39912 * 17 15 14 20 20 N 1.31620 * 120.00060 * 14.97872 * 19 17 15 21 21 Si 1.86803 * 120.00486 * 194.97688 * 19 17 15 22 22 H 1.48495 * 109.46990 * 85.00189 * 21 19 17 23 23 H 1.48500 * 109.47302 * 205.00670 * 21 19 17 24 24 H 1.48502 * 109.46762 * 325.00122 * 21 19 17 25 25 C 1.53042 * 109.53508 * 298.51245 * 14 13 12 26 26 C 1.46930 * 120.62766 * 179.97438 * 11 9 8 27 27 O 1.33976 * 108.75799 * 359.56948 * 5 4 3 28 28 H 1.09004 * 109.46454 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47049 * 299.99409 * 1 2 3 30 30 H 1.08997 * 109.47113 * 60.00072 * 1 2 3 31 31 H 1.08000 * 126.16611 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.46651 * 329.69100 * 6 5 4 33 33 H 1.08991 * 109.47488 * 209.69443 * 6 5 4 34 34 H 1.08991 * 109.47561 * 60.00032 * 8 7 6 35 35 H 1.09008 * 109.47027 * 299.99902 * 8 7 6 36 36 H 1.08994 * 109.58573 * 246.20460 * 12 11 9 37 37 H 1.09006 * 109.58255 * 6.62860 * 12 11 9 38 38 H 1.09000 * 109.63480 * 294.87313 * 13 12 11 39 39 H 1.08994 * 109.43313 * 174.72398 * 13 12 11 40 40 H 1.08994 * 109.45939 * 58.52780 * 14 13 12 41 41 H 1.08991 * 109.47177 * 95.10659 * 16 15 14 42 42 H 1.09003 * 109.46928 * 215.11665 * 16 15 14 43 43 H 1.09006 * 109.46846 * 335.10814 * 16 15 14 44 44 H 0.97003 * 120.00610 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.49670 * 301.40949 * 25 14 13 46 46 H 1.09000 * 109.52581 * 181.33363 * 25 14 13 47 47 H 1.08994 * 109.59079 * 353.37976 * 26 11 9 48 48 H 1.09004 * 109.58440 * 113.65805 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0053 5 6 3.5766 -0.6547 -0.0008 6 6 4.8005 -1.5340 -0.0014 7 8 5.1877 -1.8122 1.3457 8 6 6.3451 -2.6429 1.4579 9 6 6.6607 -2.8705 2.9138 10 8 5.9636 -2.3702 3.7709 11 7 7.7178 -3.6301 3.2634 12 6 8.5679 -4.2479 2.2366 13 6 10.0274 -3.8523 2.5079 14 6 10.3957 -4.2365 3.9429 15 7 11.7975 -3.8941 4.1953 16 6 12.2450 -2.5042 4.0762 17 6 12.6896 -4.8732 4.5425 18 1 12.4712 -5.9069 4.3184 19 6 13.8747 -4.5372 5.1824 20 7 14.0180 -3.3434 5.7178 21 14 15.2662 -5.7793 5.2839 22 1 16.0820 -5.7109 4.0449 23 1 16.1216 -5.4697 6.4576 24 1 14.7011 -7.1449 5.4298 25 6 9.5003 -3.4744 4.9225 26 6 8.0385 -3.8606 4.6786 27 8 2.3075 -1.0840 -0.0005 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9822 2.1112 0.0004 32 1 5.6147 -1.0230 -0.5153 33 1 4.5762 -2.4685 -0.5154 34 1 7.1911 -2.1547 0.9744 35 1 6.1531 -3.6007 0.9741 36 1 8.4659 -5.3321 2.2817 37 1 8.2684 -3.8912 1.2511 38 1 10.1455 -2.7766 2.3776 39 1 10.6809 -4.3777 1.8116 40 1 10.2536 -5.3084 4.0796 41 1 12.2253 -2.0308 5.0578 42 1 13.2612 -2.4821 3.6824 43 1 11.5814 -1.9655 3.3996 44 1 14.8462 -3.1084 6.1647 45 1 9.6235 -2.4022 4.7694 46 1 9.7785 -3.7302 5.9449 47 1 7.3895 -3.2485 5.3048 48 1 7.8917 -4.9135 4.9197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725422480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:48 Heat of formation + Delta-G solvation = -47.424879 kcal Electronic energy + Delta-G solvation = -28874.178144 eV Core-core repulsion = 24738.356434 eV Total energy + Delta-G solvation = -4135.821710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.39522 -41.29358 -39.33022 -38.46298 -36.68896 -35.84477 -34.00605 -33.70611 -32.38427 -31.47315 -30.51307 -28.49162 -28.02301 -26.30387 -25.96686 -24.07775 -23.68591 -23.38353 -22.17234 -21.33328 -19.87655 -18.79757 -18.72476 -18.20196 -17.83909 -17.37805 -17.27258 -16.97997 -16.53652 -16.00596 -15.78400 -15.66839 -15.25842 -15.10418 -15.00865 -14.62165 -14.53527 -14.19277 -13.93778 -13.87389 -13.78326 -13.29707 -13.18317 -13.16542 -13.06988 -12.96299 -12.78048 -12.62444 -12.45254 -12.33170 -12.18357 -12.05468 -11.79475 -11.63912 -11.60521 -11.22197 -10.89878 -10.81568 -10.58205 -9.76118 -9.68762 -8.77659 -7.79311 -5.25197 0.23653 1.34092 1.48602 1.49767 1.54274 1.57835 1.64114 1.86640 2.53224 2.75943 3.20341 3.33580 3.55224 3.65076 3.78012 3.89792 4.00710 4.08070 4.11845 4.17677 4.21176 4.22804 4.28526 4.33922 4.41269 4.47937 4.58732 4.62736 4.68183 4.73170 4.82413 4.84950 4.93409 4.99389 5.01421 5.11853 5.14840 5.26157 5.26976 5.36133 5.52094 5.61033 5.68348 5.73776 5.86106 6.34744 6.40531 6.63414 7.12613 7.17723 7.91880 8.35624 9.24049 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.001806 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.991140 B =15502.580881 C =15589.076723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.069 4.069 4 N -0.492 5.492 5 C 0.166 3.834 6 C 0.159 3.841 7 O -0.398 6.398 8 C 0.050 3.950 9 C 0.508 3.492 10 O -0.583 6.583 11 N -0.603 5.603 12 C 0.112 3.888 13 C -0.138 4.138 14 C 0.172 3.828 15 N -0.611 5.611 16 C 0.183 3.817 17 C -0.256 4.256 18 H 0.078 0.922 19 C -0.059 4.059 20 N -0.943 5.943 21 Si 0.967 3.033 22 H -0.286 1.286 23 H -0.301 1.301 24 H -0.267 1.267 25 C -0.133 4.133 26 C 0.125 3.875 27 O -0.208 6.208 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.209 0.791 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.066 0.934 41 H -0.006 1.006 42 H 0.013 0.987 43 H 0.027 0.973 44 H 0.245 0.755 45 H 0.039 0.961 46 H 0.050 0.950 47 H 0.069 0.931 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.027 1.020 -18.074 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 C -0.207 4.207 4 N -0.224 5.224 5 C -0.040 4.040 6 C 0.083 3.917 7 O -0.316 6.316 8 C -0.028 4.028 9 C 0.297 3.703 10 O -0.463 6.463 11 N -0.337 5.337 12 C -0.010 4.010 13 C -0.178 4.178 14 C 0.065 3.935 15 N -0.333 5.333 16 C 0.038 3.962 17 C -0.387 4.387 18 H 0.096 0.904 19 C -0.254 4.254 20 N -0.590 5.590 21 Si 0.796 3.204 22 H -0.213 1.213 23 H -0.228 1.228 24 H -0.191 1.191 25 C -0.173 4.173 26 C 0.001 3.999 27 O -0.095 6.095 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.225 0.775 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.012 0.988 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.798 1.690 -17.381 30.330 hybrid contribution 0.911 -0.391 0.829 1.292 sum -23.886 1.299 -16.553 29.090 Atomic orbital electron populations 1.20558 0.80570 1.05452 1.05852 1.24437 0.96870 0.83780 1.04091 1.23605 0.87069 1.02103 1.07950 1.70392 1.24952 1.10061 1.16952 1.26160 0.84757 0.90217 1.02881 1.20818 0.88639 0.97895 0.84367 1.88007 1.46646 1.70735 1.26249 1.22485 0.89752 0.98023 0.92578 1.20927 0.79988 0.77546 0.91883 1.90700 1.51075 1.50862 1.53670 1.48191 1.27966 1.49639 1.07933 1.22164 0.88098 0.99418 0.91291 1.22397 0.96305 1.01477 0.97635 1.20563 0.82358 0.97472 0.93109 1.44234 1.04641 1.04377 1.80058 1.20389 0.95384 0.84497 0.95915 1.19632 0.98742 0.89755 1.30531 0.90432 1.25748 1.02167 0.98690 0.98751 1.70273 1.25922 1.22278 1.40561 0.85270 0.79482 0.79152 0.76471 1.21272 1.22844 1.19142 1.22301 0.94649 0.99969 1.00407 1.21462 0.94840 1.01746 0.81804 1.84399 1.18025 1.37565 1.69525 0.89735 0.87608 0.86775 0.77456 0.86493 0.86392 0.86624 0.85305 0.88637 0.86064 0.92832 0.89955 0.91551 0.98798 0.96773 0.95432 0.94576 0.94215 0.93084 0.91203 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.24 0.74 0.28 16 2 C -0.04 -0.66 7.39 24.79 0.18 -0.48 16 3 C -0.07 -1.34 11.80 83.39 0.98 -0.35 16 4 N -0.49 -12.55 11.29 -303.82 -3.43 -15.98 16 5 C 0.17 3.79 7.97 88.34 0.70 4.50 16 6 C 0.16 2.51 6.56 71.24 0.47 2.98 16 7 O -0.40 -9.42 9.86 -129.94 -1.28 -10.70 16 8 C 0.05 0.84 4.76 71.24 0.34 1.18 16 9 C 0.51 13.95 7.78 87.66 0.68 14.63 16 10 O -0.58 -22.58 15.91 16.00 0.25 -22.33 16 11 N -0.60 -15.04 2.97 -818.14 -2.43 -17.47 16 12 C 0.11 2.00 6.37 86.51 0.55 2.55 16 13 C -0.14 -3.73 5.34 30.82 0.16 -3.56 16 14 C 0.17 6.26 2.55 45.02 0.11 6.37 16 15 N -0.61 -29.30 2.81 -702.63 -1.98 -31.27 16 16 C 0.18 9.07 8.03 127.77 1.03 10.10 16 17 C -0.26 -13.59 9.61 84.03 0.81 -12.78 16 18 H 0.08 3.90 7.81 -2.91 -0.02 3.88 16 19 C -0.06 -3.28 5.06 84.86 0.43 -2.85 16 20 N -0.94 -56.32 10.67 21.65 0.23 -56.09 16 21 Si 0.97 44.59 29.58 68.60 2.03 46.62 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C -0.13 -4.79 5.34 30.66 0.16 -4.63 16 26 C 0.12 3.68 6.43 86.35 0.55 4.24 16 27 O -0.21 -4.56 10.78 -3.82 -0.04 -4.60 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.21 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.12 1.31 7.70 -2.39 -0.02 1.29 16 35 H 0.13 1.03 7.93 -2.38 -0.02 1.01 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.16 5.93 -2.38 -0.01 1.14 16 38 H 0.05 1.57 6.72 -2.39 -0.02 1.55 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.38 7.85 -2.39 -0.02 2.36 16 41 H -0.01 -0.35 7.40 -2.39 -0.02 -0.37 16 42 H 0.01 0.74 7.22 -2.39 -0.02 0.72 16 43 H 0.03 1.17 6.47 -2.38 -0.02 1.15 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.04 1.57 7.72 -2.38 -0.02 1.55 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.07 2.32 7.01 -2.39 -0.02 2.30 16 48 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -84.61 390.01 2.23 -82.38 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.96 Total: 7.26 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 7.92 Total: 22.19 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -7.60 Total: -120.81 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.07 Total: -37.63 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -84.61 2.23 -82.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725422480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.959 kcal (2) G-P(sol) polarization free energy of solvation -84.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds