Wall clock time and date at job start Tue Mar 31 2020 19:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34323 * 126.44156 * 2 1 4 4 N 1.34479 * 107.66518 * 179.76902 * 3 2 1 5 5 C 1.30261 * 108.70266 * 0.42460 * 4 3 2 6 6 C 1.50694 * 125.61949 * 179.84154 * 5 4 3 7 7 O 1.42898 * 109.47364 * 89.69448 * 6 5 4 8 8 C 1.42906 * 113.99828 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46702 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99858 * 0.02562 * 11 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 14 14 H 1.09005 * 109.46750 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47640 * 240.00516 * 13 11 9 16 16 N 1.46500 * 109.47092 * 54.99701 * 15 13 11 17 17 C 1.36939 * 120.00107 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99844 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99944 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00418 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99693 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47319 * 90.00366 * 21 19 17 23 23 H 1.48501 * 109.46952 * 210.00151 * 21 19 17 24 24 H 1.48495 * 109.47311 * 329.99825 * 21 19 17 25 25 C 1.53001 * 109.47195 * 120.00192 * 13 11 9 26 26 C 1.52996 * 117.49919 * 248.75260 * 25 13 11 27 27 C 1.53002 * 117.49870 * 180.09020 * 25 13 11 28 28 O 1.33970 * 108.75531 * 359.57055 * 5 4 3 29 29 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46611 * 299.99926 * 1 2 3 31 31 H 1.08999 * 109.46976 * 59.99878 * 1 2 3 32 32 H 1.07998 * 126.17344 * 0.02800 * 3 2 1 33 33 H 1.09000 * 109.47609 * 329.68923 * 6 5 4 34 34 H 1.09002 * 109.47072 * 209.69438 * 6 5 4 35 35 H 1.09000 * 109.46890 * 59.99811 * 8 7 6 36 36 H 1.09000 * 109.47141 * 299.99454 * 8 7 6 37 37 H 1.08999 * 109.47441 * 89.99653 * 12 11 9 38 38 H 1.09005 * 109.47121 * 209.99861 * 12 11 9 39 39 H 1.08997 * 109.47160 * 329.99513 * 12 11 9 40 40 H 1.09000 * 109.47311 * 174.99872 * 15 13 11 41 41 H 1.08999 * 109.46836 * 294.99860 * 15 13 11 42 42 H 0.97002 * 120.00364 * 0.02562 * 16 15 13 43 43 H 0.96996 * 119.99808 * 179.97438 * 20 19 17 44 44 H 1.08997 * 115.54753 * 34.41568 * 25 13 11 45 45 H 1.09001 * 117.50127 * 359.97438 * 26 25 13 46 46 H 1.09004 * 117.50298 * 145.01876 * 26 25 13 47 47 H 1.08997 * 117.49794 * 214.97983 * 27 25 13 48 48 H 1.08998 * 117.49837 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5765 -0.6549 -0.0009 6 6 4.8004 -1.5341 -0.0014 7 8 5.1877 -1.8124 1.3456 8 6 6.3444 -2.6440 1.4578 9 6 6.6607 -2.8706 2.9138 10 8 5.9646 -2.3689 3.7708 11 7 7.7173 -3.6308 3.2634 12 6 8.5586 -4.2363 2.2280 13 6 8.0253 -3.8507 4.6786 14 1 7.2958 -3.3253 5.2950 15 6 9.4276 -3.3205 4.9839 16 7 9.5177 -1.9158 4.5778 17 6 10.6871 -1.2256 4.7547 18 1 11.5432 -1.7170 5.1932 19 6 10.7727 0.1052 4.3695 20 7 9.7296 0.7039 3.8347 21 14 12.3682 1.0465 4.6102 22 1 13.2167 0.9000 3.4003 23 1 12.0664 2.4835 4.8321 24 1 13.0896 0.5044 5.7895 25 6 7.9680 -5.3483 4.9863 26 6 6.8296 -5.8427 5.8810 27 6 8.2601 -5.7860 6.4231 28 8 2.3074 -1.0840 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9823 2.1112 0.0004 33 1 5.6146 -1.0232 -0.5154 34 1 4.5761 -2.4687 -0.5155 35 1 7.1907 -2.1565 0.9740 36 1 6.1516 -3.6017 0.9742 37 1 9.3674 -3.5524 1.9710 38 1 8.9777 -5.1709 2.6011 39 1 7.9565 -4.4364 1.3417 40 1 9.6224 -3.4029 6.0532 41 1 10.1648 -3.9057 4.4341 42 1 8.7491 -1.4746 4.1837 43 1 9.7894 1.6340 3.5659 44 1 8.2985 -6.0063 4.1827 45 1 6.1216 -5.1010 6.2507 46 1 6.4114 -6.8262 5.6662 47 1 8.7825 -6.7321 6.5646 48 1 8.4934 -5.0070 7.1489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725464495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:56 Heat of formation + Delta-G solvation = -1.400142 kcal Electronic energy + Delta-G solvation = -29391.194316 eV Core-core repulsion = 25257.368389 eV Total energy + Delta-G solvation = -4133.825927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.43039 -39.90739 -38.13808 -37.07622 -35.09894 -34.82713 -33.98253 -32.91888 -31.28782 -29.86238 -28.57542 -27.07954 -26.27662 -25.21904 -24.02218 -22.43369 -22.42506 -21.52989 -21.21277 -20.32568 -18.89893 -17.70233 -17.19001 -17.09225 -16.74102 -16.37225 -16.17098 -15.88244 -15.03436 -14.91575 -14.66027 -14.43181 -14.23448 -13.86768 -13.58514 -13.38891 -13.21232 -13.10367 -12.98156 -12.71652 -12.59256 -12.41584 -12.20895 -11.95781 -11.78536 -11.48289 -11.42129 -11.39072 -11.04115 -10.78928 -10.68601 -10.59115 -10.31252 -10.09993 -9.87900 -9.78404 -9.60790 -9.34957 -8.85769 -8.81668 -8.23135 -6.85124 -5.67387 -2.97727 1.19003 2.30084 2.56778 2.97254 3.07008 3.46903 3.51937 3.54712 3.72225 3.95076 4.25282 4.54110 4.61144 4.73452 4.79442 4.84209 4.87369 4.95528 5.04285 5.05346 5.09521 5.11045 5.22219 5.32560 5.33051 5.37585 5.40935 5.62189 5.66355 5.68865 5.74275 5.80508 5.88870 5.92990 6.01519 6.09871 6.16067 6.24369 6.27286 6.34910 6.50475 6.75642 6.79206 7.04845 7.63176 7.71116 7.75121 8.49358 8.56873 9.60679 10.19166 10.54338 11.54281 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008711 B = 0.003145 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.514937 B = 8902.127307 C =11317.232714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.045 4.045 3 C -0.043 4.043 4 N -0.454 5.454 5 C 0.191 3.809 6 C 0.161 3.839 7 O -0.354 6.354 8 C 0.050 3.950 9 C 0.521 3.479 10 O -0.516 6.516 11 N -0.594 5.594 12 C 0.077 3.923 13 C 0.164 3.836 14 H 0.101 0.899 15 C 0.149 3.851 16 N -0.728 5.728 17 C -0.242 4.242 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.926 5.926 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.159 4.159 26 C -0.179 4.179 27 C -0.170 4.170 28 O -0.196 6.196 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.021 0.979 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.237 -12.097 -10.072 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.099 4.099 3 C -0.182 4.182 4 N -0.185 5.185 5 C -0.016 4.016 6 C 0.083 3.917 7 O -0.272 6.272 8 C -0.030 4.030 9 C 0.307 3.693 10 O -0.391 6.391 11 N -0.328 5.328 12 C -0.066 4.066 13 C 0.061 3.939 14 H 0.119 0.881 15 C 0.020 3.980 16 N -0.373 5.373 17 C -0.373 4.373 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.574 5.574 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.209 1.209 25 C -0.178 4.178 26 C -0.216 4.216 27 C -0.208 4.208 28 O -0.083 6.083 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.202 0.798 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.005 -11.392 -9.395 20.352 hybrid contribution 0.318 0.312 -0.276 0.524 sum -13.687 -11.081 -9.670 20.091 Atomic orbital electron populations 1.20287 0.83861 1.04357 1.03928 1.23530 0.95108 0.84623 1.06596 1.23131 0.87651 1.00542 1.06900 1.70470 1.23153 1.09092 1.15744 1.25567 0.83744 0.89985 1.02264 1.20469 0.89073 0.96161 0.85957 1.88086 1.45621 1.69951 1.23499 1.22305 0.89516 0.95142 0.95996 1.19913 0.80641 0.78613 0.90090 1.90728 1.49236 1.47627 1.51484 1.47465 1.28112 1.50364 1.06905 1.21785 0.95579 0.99003 0.90272 1.20912 0.99386 0.92246 0.81364 0.88131 1.20920 0.92106 0.87567 0.97369 1.42313 1.14068 1.06144 1.74792 1.19179 0.90651 0.93147 1.34351 0.91319 1.24757 0.97344 0.96977 1.01760 1.69689 1.28676 1.11779 1.47290 0.86229 0.83075 0.79487 0.77595 1.21829 1.21803 1.20861 1.22541 1.04096 0.96705 0.94469 1.23020 0.91819 1.02389 1.04365 1.22929 0.98577 1.02869 0.96382 1.84378 1.17787 1.36614 1.69500 0.90362 0.89146 0.89310 0.79756 0.88270 0.90181 0.89182 0.90282 0.91317 0.91038 0.91870 0.95394 0.96099 0.77956 0.93490 0.87672 0.88668 0.89197 0.88850 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 36.01 0.38 -0.06 16 2 C -0.05 -0.52 7.39 -35.69 -0.26 -0.78 16 3 C -0.04 -0.55 11.80 -17.77 -0.21 -0.76 16 4 N -0.45 -7.37 11.29 -11.10 -0.13 -7.49 16 5 C 0.19 2.85 7.97 -12.95 -0.10 2.74 16 6 C 0.16 2.01 6.56 36.00 0.24 2.25 16 7 O -0.35 -5.95 9.86 -55.14 -0.54 -6.50 16 8 C 0.05 0.72 4.97 36.01 0.18 0.89 16 9 C 0.52 9.73 7.46 -10.98 -0.08 9.64 16 10 O -0.52 -12.11 15.83 -14.35 -0.23 -12.34 16 11 N -0.59 -9.80 2.24 -173.93 -0.39 -10.19 16 12 C 0.08 0.95 9.37 59.85 0.56 1.52 16 13 C 0.16 2.86 2.42 -67.93 -0.16 2.70 16 14 H 0.10 2.06 6.66 -51.93 -0.35 1.72 16 15 C 0.15 3.04 5.32 -4.04 -0.02 3.01 16 16 N -0.73 -19.04 5.43 -59.91 -0.33 -19.37 16 17 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 21 Si 0.90 22.91 29.55 -169.99 -5.02 17.88 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C -0.16 -2.12 5.15 -90.62 -0.47 -2.58 16 26 C -0.18 -2.20 10.18 -26.69 -0.27 -2.47 16 27 C -0.17 -2.06 9.80 -26.69 -0.26 -2.32 16 28 O -0.20 -2.71 10.78 5.37 0.06 -2.66 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.19 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 36 H 0.08 0.78 7.40 -51.93 -0.38 0.40 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.76 6.43 -51.93 -0.33 0.42 16 39 H 0.06 0.57 6.44 -51.93 -0.33 0.23 16 40 H 0.03 0.58 7.47 -51.93 -0.39 0.19 16 41 H 0.02 0.41 7.84 -51.93 -0.41 0.01 16 42 H 0.39 11.05 7.07 -40.82 -0.29 10.76 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.11 1.23 6.59 -51.93 -0.34 0.89 16 45 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.10 1.29 7.66 -51.93 -0.40 0.89 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -39.27 402.73 -7.93 -47.21 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.41 Total: 9.53 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.74 Total: 6.28 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -0.12 Total: -65.48 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.71 Total: -21.49 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.27 -7.93 -47.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725464495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.809 kcal (2) G-P(sol) polarization free energy of solvation -39.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds