Wall clock time and date at job start Tue Mar 31 2020 19:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34323 * 126.44156 * 2 1 4 4 N 1.34479 * 107.66518 * 179.76902 * 3 2 1 5 5 C 1.30261 * 108.70266 * 0.42460 * 4 3 2 6 6 C 1.50694 * 125.61949 * 179.84154 * 5 4 3 7 7 O 1.42898 * 109.47364 * 89.69448 * 6 5 4 8 8 C 1.42906 * 113.99828 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46702 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99858 * 0.02562 * 11 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 14 14 H 1.09005 * 109.46750 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47640 * 240.00516 * 13 11 9 16 16 N 1.46500 * 109.47092 * 54.99701 * 15 13 11 17 17 C 1.36939 * 120.00107 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99844 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99944 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00418 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99693 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47319 * 90.00366 * 21 19 17 23 23 H 1.48501 * 109.46952 * 210.00151 * 21 19 17 24 24 H 1.48495 * 109.47311 * 329.99825 * 21 19 17 25 25 C 1.53001 * 109.47195 * 120.00192 * 13 11 9 26 26 C 1.52996 * 117.49919 * 248.75260 * 25 13 11 27 27 C 1.53002 * 117.49870 * 180.09020 * 25 13 11 28 28 O 1.33970 * 108.75531 * 359.57055 * 5 4 3 29 29 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46611 * 299.99926 * 1 2 3 31 31 H 1.08999 * 109.46976 * 59.99878 * 1 2 3 32 32 H 1.07998 * 126.17344 * 0.02800 * 3 2 1 33 33 H 1.09000 * 109.47609 * 329.68923 * 6 5 4 34 34 H 1.09002 * 109.47072 * 209.69438 * 6 5 4 35 35 H 1.09000 * 109.46890 * 59.99811 * 8 7 6 36 36 H 1.09000 * 109.47141 * 299.99454 * 8 7 6 37 37 H 1.08999 * 109.47441 * 89.99653 * 12 11 9 38 38 H 1.09005 * 109.47121 * 209.99861 * 12 11 9 39 39 H 1.08997 * 109.47160 * 329.99513 * 12 11 9 40 40 H 1.09000 * 109.47311 * 174.99872 * 15 13 11 41 41 H 1.08999 * 109.46836 * 294.99860 * 15 13 11 42 42 H 0.97002 * 120.00364 * 0.02562 * 16 15 13 43 43 H 0.96996 * 119.99808 * 179.97438 * 20 19 17 44 44 H 1.08997 * 115.54753 * 34.41568 * 25 13 11 45 45 H 1.09001 * 117.50127 * 359.97438 * 26 25 13 46 46 H 1.09004 * 117.50298 * 145.01876 * 26 25 13 47 47 H 1.08997 * 117.49794 * 214.97983 * 27 25 13 48 48 H 1.08998 * 117.49837 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5765 -0.6549 -0.0009 6 6 4.8004 -1.5341 -0.0014 7 8 5.1877 -1.8124 1.3456 8 6 6.3444 -2.6440 1.4578 9 6 6.6607 -2.8706 2.9138 10 8 5.9646 -2.3689 3.7708 11 7 7.7173 -3.6308 3.2634 12 6 8.5586 -4.2363 2.2280 13 6 8.0253 -3.8507 4.6786 14 1 7.2958 -3.3253 5.2950 15 6 9.4276 -3.3205 4.9839 16 7 9.5177 -1.9158 4.5778 17 6 10.6871 -1.2256 4.7547 18 1 11.5432 -1.7170 5.1932 19 6 10.7727 0.1052 4.3695 20 7 9.7296 0.7039 3.8347 21 14 12.3682 1.0465 4.6102 22 1 13.2167 0.9000 3.4003 23 1 12.0664 2.4835 4.8321 24 1 13.0896 0.5044 5.7895 25 6 7.9680 -5.3483 4.9863 26 6 6.8296 -5.8427 5.8810 27 6 8.2601 -5.7860 6.4231 28 8 2.3074 -1.0840 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9823 2.1112 0.0004 33 1 5.6146 -1.0232 -0.5154 34 1 4.5761 -2.4687 -0.5155 35 1 7.1907 -2.1565 0.9740 36 1 6.1516 -3.6017 0.9742 37 1 9.3674 -3.5524 1.9710 38 1 8.9777 -5.1709 2.6011 39 1 7.9565 -4.4364 1.3417 40 1 9.6224 -3.4029 6.0532 41 1 10.1648 -3.9057 4.4341 42 1 8.7491 -1.4746 4.1837 43 1 9.7894 1.6340 3.5659 44 1 8.2985 -6.0063 4.1827 45 1 6.1216 -5.1010 6.2507 46 1 6.4114 -6.8262 5.6662 47 1 8.7825 -6.7321 6.5646 48 1 8.4934 -5.0070 7.1489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725464495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:55 Heat of formation + Delta-G solvation = -31.051406 kcal Electronic energy + Delta-G solvation = -29392.480092 eV Core-core repulsion = 25257.368389 eV Total energy + Delta-G solvation = -4135.111703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41752 -41.25202 -39.30054 -38.31645 -36.57707 -35.86908 -35.76455 -33.74678 -33.22126 -31.01293 -29.93513 -28.24562 -27.56126 -26.19914 -25.79116 -23.75944 -23.40886 -22.89072 -22.19957 -21.55510 -20.26163 -19.14833 -18.83078 -18.22769 -17.89676 -17.55956 -17.33553 -16.96405 -16.62849 -16.28869 -15.91730 -15.55302 -15.42337 -15.31719 -14.91253 -14.68578 -14.65693 -14.21705 -13.89251 -13.88676 -13.67433 -13.32701 -13.28407 -13.18781 -13.06660 -12.92692 -12.87372 -12.71312 -12.47997 -12.39800 -12.21527 -12.10719 -11.78136 -11.63425 -11.32303 -11.01011 -10.91964 -10.89985 -10.72569 -9.77871 -9.58055 -9.00885 -7.93048 -5.24144 0.21254 1.32583 1.44637 1.47663 1.56177 1.60421 1.61626 1.88502 2.54391 2.74760 2.91903 3.23294 3.39418 3.55681 3.67094 3.75590 3.97145 3.99033 4.00612 4.08200 4.11156 4.14469 4.18716 4.27992 4.31965 4.40281 4.45283 4.45761 4.57878 4.60404 4.67472 4.76066 4.80401 4.89641 4.98141 5.00424 5.06019 5.09562 5.12593 5.24189 5.27309 5.30203 5.46958 5.60216 5.85845 6.25321 6.43187 6.63032 7.20457 7.31905 8.07943 8.31263 9.29583 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008711 B = 0.003145 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.514937 B = 8902.127307 C =11317.232714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.036 4.036 3 C -0.071 4.071 4 N -0.497 5.497 5 C 0.167 3.833 6 C 0.159 3.841 7 O -0.398 6.398 8 C 0.056 3.944 9 C 0.504 3.496 10 O -0.582 6.582 11 N -0.591 5.591 12 C 0.070 3.930 13 C 0.170 3.830 14 H 0.058 0.942 15 C 0.149 3.851 16 N -0.743 5.743 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.976 3.024 22 H -0.282 1.282 23 H -0.301 1.301 24 H -0.268 1.268 25 C -0.161 4.161 26 C -0.174 4.174 27 C -0.162 4.162 28 O -0.206 6.206 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.209 0.791 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.026 0.974 41 H 0.040 0.960 42 H 0.370 0.630 43 H 0.248 0.752 44 H 0.135 0.865 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.902 -14.832 -11.362 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 C -0.210 4.210 4 N -0.228 5.228 5 C -0.039 4.039 6 C 0.082 3.918 7 O -0.316 6.316 8 C -0.023 4.023 9 C 0.293 3.707 10 O -0.462 6.462 11 N -0.324 5.324 12 C -0.071 4.071 13 C 0.066 3.934 14 H 0.076 0.924 15 C 0.022 3.978 16 N -0.385 5.385 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.805 3.195 22 H -0.209 1.209 23 H -0.228 1.228 24 H -0.193 1.193 25 C -0.180 4.180 26 C -0.211 4.211 27 C -0.200 4.200 28 O -0.092 6.092 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.225 0.775 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.152 0.848 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.201 0.799 43 H 0.057 0.943 44 H 0.152 0.848 45 H 0.090 0.910 46 H 0.136 0.864 47 H 0.141 0.859 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.622 -14.208 -10.692 22.400 hybrid contribution 0.151 1.142 0.175 1.165 sum -13.472 -13.066 -10.518 21.513 Atomic orbital electron populations 1.20570 0.80147 1.05575 1.05901 1.24487 0.96956 0.83644 1.03884 1.23631 0.86968 1.02255 1.08128 1.70422 1.25268 1.10293 1.16851 1.26049 0.84737 0.90112 1.03003 1.20799 0.88587 0.97981 0.84426 1.88018 1.46427 1.70900 1.26299 1.22408 0.89341 0.97544 0.92988 1.20878 0.80394 0.77725 0.91690 1.90687 1.51657 1.50250 1.53566 1.47616 1.27818 1.49657 1.07280 1.22083 0.95206 0.99006 0.90831 1.20658 0.96061 0.94744 0.81943 0.92390 1.21092 0.94600 0.84935 0.97150 1.42540 1.12839 1.08352 1.74779 1.19636 0.91504 0.93509 1.32798 0.90254 1.25632 1.00756 0.98182 1.02389 1.69893 1.31148 1.11610 1.49364 0.85108 0.79101 0.77213 0.78114 1.20861 1.22788 1.19315 1.22454 1.05666 0.93818 0.96083 1.23040 0.91537 1.02943 1.03614 1.23016 0.98548 1.03550 0.94867 1.84383 1.17805 1.37514 1.69535 0.89500 0.87639 0.86597 0.77458 0.87382 0.85856 0.88400 0.84827 0.93567 0.88509 0.87639 0.95633 0.94185 0.79885 0.94301 0.84779 0.91007 0.86409 0.85857 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.43 71.24 0.74 0.03 16 2 C -0.04 -0.82 7.39 24.79 0.18 -0.64 16 3 C -0.07 -1.86 11.80 83.39 0.98 -0.87 16 4 N -0.50 -16.78 11.29 -303.83 -3.43 -20.22 16 5 C 0.17 5.10 7.97 88.34 0.70 5.80 16 6 C 0.16 3.91 6.56 71.23 0.47 4.38 16 7 O -0.40 -13.61 9.86 -129.94 -1.28 -14.89 16 8 C 0.06 1.55 4.97 71.24 0.35 1.90 16 9 C 0.50 19.32 7.46 87.66 0.65 19.97 16 10 O -0.58 -29.21 15.83 16.01 0.25 -28.96 16 11 N -0.59 -19.32 2.24 -822.58 -1.85 -21.16 16 12 C 0.07 1.57 9.37 127.77 1.20 2.77 16 13 C 0.17 6.01 2.42 44.99 0.11 6.12 16 14 H 0.06 2.55 6.66 -2.38 -0.02 2.54 16 15 C 0.15 6.11 5.32 86.38 0.46 6.57 16 16 N -0.74 -39.85 5.43 -343.46 -1.87 -41.72 16 17 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 20 N -0.97 -63.21 13.06 21.65 0.28 -62.92 16 21 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.16 -3.99 5.15 -10.79 -0.06 -4.05 16 26 C -0.17 -4.04 10.18 30.62 0.31 -3.72 16 27 C -0.16 -3.61 9.80 30.62 0.30 -3.31 16 28 O -0.21 -5.69 10.78 -3.70 -0.04 -5.73 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.21 3.95 8.06 -2.91 -0.02 3.92 16 33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.10 2.54 8.11 -2.39 -0.02 2.52 16 36 H 0.13 2.16 7.40 -2.39 -0.02 2.14 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.67 6.43 -2.38 -0.02 1.66 16 39 H 0.11 1.45 6.44 -2.39 -0.02 1.44 16 40 H 0.03 1.07 7.47 -2.39 -0.02 1.05 16 41 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 42 H 0.37 22.18 7.07 -92.71 -0.65 21.52 16 43 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.13 2.58 6.59 -2.39 -0.02 2.56 16 45 H 0.07 2.01 8.05 -2.39 -0.02 1.99 16 46 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.08 2.10 7.66 -2.39 -0.02 2.09 16 Total: -1.00 -92.84 402.73 2.14 -90.70 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: 0.32 Total: 37.50 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 7.72 Total: 17.63 kcal Atomic # 7 Polarization: -139.16 SS G_CDS: -6.86 Total: -146.02 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -1.07 Total: -49.58 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -92.84 2.14 -90.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725464495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.648 kcal (2) G-P(sol) polarization free energy of solvation -92.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds