Wall clock time and date at job start Tue Mar 31 2020 19:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34329 * 126.44333 * 2 1 4 4 N 1.34480 * 107.66997 * 179.76854 * 3 2 1 5 5 C 1.30252 * 108.69742 * 0.42032 * 4 3 2 6 6 C 1.50701 * 125.62046 * 179.83895 * 5 4 3 7 7 O 1.42901 * 109.46885 * 89.68993 * 6 5 4 8 8 C 1.42905 * 113.99701 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47085 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99575 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00335 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99594 * 0.02562 * 11 9 8 13 13 C 1.46501 * 120.00308 * 180.02562 * 11 9 8 14 14 H 1.09000 * 109.46894 * 0.02562 * 13 11 9 15 15 C 1.52993 * 109.47004 * 120.00028 * 13 11 9 16 16 N 1.46500 * 109.47250 * 304.99865 * 15 13 11 17 17 C 1.36946 * 119.99962 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99598 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99957 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00149 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00285 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47174 * 89.99776 * 21 19 17 23 23 H 1.48494 * 109.47263 * 210.00588 * 21 19 17 24 24 H 1.48509 * 109.46667 * 330.00261 * 21 19 17 25 25 C 1.52998 * 109.46930 * 240.00162 * 13 11 9 26 26 C 1.53004 * 117.49676 * 248.74536 * 25 13 11 27 27 C 1.53003 * 117.49680 * 180.08846 * 25 13 11 28 28 O 1.33974 * 108.76356 * 359.57660 * 5 4 3 29 29 H 1.09004 * 109.47507 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47449 * 300.00046 * 1 2 3 31 31 H 1.09007 * 109.47428 * 59.99903 * 1 2 3 32 32 H 1.08006 * 126.16162 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46889 * 329.69689 * 6 5 4 34 34 H 1.08997 * 109.47404 * 209.69726 * 6 5 4 35 35 H 1.09000 * 109.46888 * 60.00289 * 8 7 6 36 36 H 1.08996 * 109.47217 * 300.00142 * 8 7 6 37 37 H 1.09001 * 109.47060 * 90.00388 * 12 11 9 38 38 H 1.09004 * 109.47073 * 209.99877 * 12 11 9 39 39 H 1.09000 * 109.47212 * 329.99960 * 12 11 9 40 40 H 1.09001 * 109.47324 * 64.99985 * 15 13 11 41 41 H 1.09003 * 109.47102 * 185.00175 * 15 13 11 42 42 H 0.96992 * 119.99927 * 0.02562 * 16 15 13 43 43 H 0.96997 * 119.99880 * 179.97438 * 20 19 17 44 44 H 1.09001 * 115.55283 * 34.41226 * 25 13 11 45 45 H 1.08997 * 117.50189 * 0.02562 * 26 25 13 46 46 H 1.08999 * 117.49784 * 145.02515 * 26 25 13 47 47 H 1.09000 * 117.49556 * 214.98191 * 27 25 13 48 48 H 1.08992 * 117.49700 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6547 -0.0008 6 6 4.8004 -1.5340 -0.0013 7 8 5.1877 -1.8121 1.3458 8 6 6.3450 -2.6428 1.4581 9 6 6.6607 -2.8704 2.9140 10 8 5.9630 -2.3707 3.7710 11 7 7.7183 -3.6290 3.2637 12 6 8.5614 -4.2321 2.2284 13 6 8.0248 -3.8507 4.6790 14 1 7.2935 -3.3277 5.2953 15 6 7.9701 -5.3489 4.9841 16 7 6.6677 -5.8827 4.5780 17 6 6.3865 -7.2111 4.7558 18 1 7.1249 -7.8651 5.1958 19 6 5.1527 -7.7170 4.3705 20 7 4.8823 -8.9937 4.5419 21 14 3.8754 -6.5856 3.6102 22 1 4.0485 -6.5639 2.1355 23 1 2.5153 -7.0809 3.9418 24 1 4.0471 -5.2124 4.1490 25 6 9.4258 -3.3183 4.9868 26 6 10.5144 -4.3423 5.3145 27 6 9.9354 -3.4591 6.4226 28 8 2.3074 -1.0840 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.9820 2.1113 0.0004 33 1 5.6146 -1.0230 -0.5153 34 1 4.5761 -2.4686 -0.5153 35 1 7.1910 -2.1545 0.9745 36 1 6.1531 -3.6005 0.9743 37 1 9.3693 -3.5465 1.9727 38 1 8.9818 -5.1663 2.6008 39 1 7.9603 -4.4323 1.3414 40 1 8.7600 -5.8607 4.4344 41 1 8.1102 -5.5072 6.0534 42 1 6.0045 -5.2952 4.1832 43 1 4.0199 -9.3471 4.2730 44 1 9.7228 -2.4281 4.4323 45 1 10.2326 -5.3952 5.3104 46 1 11.5276 -4.1255 4.9760 47 1 10.5678 -2.6616 6.8126 48 1 9.2724 -3.9306 7.1479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725464497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:00 Heat of formation + Delta-G solvation = 4.821942 kcal Electronic energy + Delta-G solvation = -29646.131666 eV Core-core repulsion = 25512.575548 eV Total energy + Delta-G solvation = -4133.556117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.54974 -40.16499 -38.41964 -37.36033 -35.13034 -34.95056 -34.19262 -33.01708 -31.44031 -30.10372 -28.88131 -27.26516 -26.48696 -25.36287 -24.22237 -22.54336 -22.45759 -21.72539 -21.34273 -20.34798 -18.85046 -17.84568 -17.49458 -17.30875 -16.84820 -16.52525 -16.41848 -15.97439 -15.40442 -15.19264 -14.77759 -14.48681 -14.32260 -13.94316 -13.72680 -13.58742 -13.44038 -13.30848 -12.99366 -12.69261 -12.65253 -12.47135 -12.32891 -12.24618 -11.99510 -11.65681 -11.58922 -11.53017 -11.18270 -10.86387 -10.77596 -10.77140 -10.39716 -10.14026 -10.07577 -9.86394 -9.59355 -9.51162 -8.97133 -8.89192 -8.45990 -7.22942 -5.77506 -3.12507 1.07564 2.16736 2.44058 2.73011 2.85927 3.37232 3.47482 3.53752 3.57150 3.90086 4.07061 4.44656 4.55688 4.61056 4.70385 4.72723 4.76831 4.81724 4.91795 4.99586 5.01233 5.05094 5.06829 5.13139 5.18056 5.25605 5.30966 5.47389 5.50871 5.59054 5.65047 5.71926 5.77351 5.80450 5.85620 5.90298 6.02826 6.04241 6.21003 6.27670 6.34235 6.54846 6.59156 6.84381 7.47947 7.50146 7.97912 8.31840 8.41810 9.21135 9.94233 10.14175 11.40611 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.003413 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.273724 B = 8202.851924 C =10321.421821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.038 4.038 3 C -0.047 4.047 4 N -0.459 5.459 5 C 0.189 3.811 6 C 0.159 3.841 7 O -0.356 6.356 8 C 0.046 3.954 9 C 0.513 3.487 10 O -0.517 6.517 11 N -0.596 5.596 12 C 0.077 3.923 13 C 0.159 3.841 14 H 0.105 0.895 15 C 0.147 3.853 16 N -0.752 5.752 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.009 3.991 20 N -0.933 5.933 21 Si 0.873 3.127 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.271 1.271 25 C -0.159 4.159 26 C -0.182 4.182 27 C -0.173 4.173 28 O -0.192 6.192 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.363 0.637 43 H 0.259 0.741 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 18.039 -11.691 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.186 4.186 4 N -0.190 5.190 5 C -0.017 4.017 6 C 0.082 3.918 7 O -0.274 6.274 8 C -0.033 4.033 9 C 0.300 3.700 10 O -0.391 6.391 11 N -0.330 5.330 12 C -0.066 4.066 13 C 0.056 3.944 14 H 0.123 0.877 15 C 0.019 3.981 16 N -0.398 5.398 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.187 4.187 20 N -0.581 5.581 21 Si 0.703 3.297 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.197 1.197 25 C -0.178 4.178 26 C -0.219 4.219 27 C -0.210 4.210 28 O -0.078 6.078 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.196 0.804 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.652 18.425 -10.995 21.765 hybrid contribution -1.462 0.208 -0.804 1.682 sum 2.190 18.633 -11.800 22.163 Atomic orbital electron populations 1.20325 0.83765 1.04673 1.03971 1.23596 0.95247 0.84531 1.05809 1.23091 0.87613 1.00487 1.07419 1.70402 1.23293 1.09010 1.16289 1.25506 0.83914 0.89888 1.02419 1.20491 0.89049 0.96527 0.85736 1.88081 1.45759 1.69733 1.23790 1.22344 0.89153 0.95964 0.95879 1.20057 0.80714 0.79030 0.90222 1.90744 1.48166 1.48740 1.51480 1.47596 1.28398 1.49780 1.07266 1.21803 0.94604 0.99342 0.90816 1.20909 0.94865 0.97559 0.81085 0.87746 1.21109 0.89345 0.89668 0.97959 1.42675 1.13138 1.07972 1.75987 1.19024 0.99906 0.83660 1.34693 0.89178 1.24607 0.97318 0.95573 1.01192 1.69698 1.23318 1.11772 1.53325 0.86706 0.82308 0.81285 0.79435 1.21195 1.21567 1.19713 1.22528 0.94609 1.01070 0.99607 1.23212 0.97523 0.98033 1.03147 1.22969 1.03697 1.02826 0.91538 1.84423 1.17722 1.36594 1.69104 0.90136 0.89032 0.89185 0.79703 0.88386 0.89792 0.89599 0.89472 0.92721 0.89689 0.91466 0.94642 0.94478 0.80412 0.93071 0.87819 0.87367 0.89170 0.88973 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.43 36.00 0.38 -0.10 16 2 C -0.04 -0.43 7.39 -35.69 -0.26 -0.70 16 3 C -0.05 -0.54 11.80 -17.77 -0.21 -0.75 16 4 N -0.46 -6.57 11.29 -11.10 -0.13 -6.70 16 5 C 0.19 2.66 7.97 -12.95 -0.10 2.55 16 6 C 0.16 1.84 6.56 36.01 0.24 2.08 16 7 O -0.36 -5.57 9.86 -55.14 -0.54 -6.12 16 8 C 0.05 0.60 4.97 36.01 0.18 0.78 16 9 C 0.51 8.91 7.45 -10.99 -0.08 8.83 16 10 O -0.52 -11.41 15.83 -14.36 -0.23 -11.64 16 11 N -0.60 -9.13 2.24 -173.93 -0.39 -9.52 16 12 C 0.08 0.88 9.61 59.85 0.58 1.46 16 13 C 0.16 2.59 2.59 -67.93 -0.18 2.42 16 14 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 15 C 0.15 2.79 4.14 -4.05 -0.02 2.77 16 16 N -0.75 -18.27 5.24 -59.91 -0.31 -18.59 16 17 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 21 Si 0.87 23.31 27.74 -169.99 -4.71 18.59 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 24 H -0.27 -7.37 6.52 56.52 0.37 -7.00 16 25 C -0.16 -2.00 5.48 -90.62 -0.50 -2.50 16 26 C -0.18 -2.05 9.59 -26.69 -0.26 -2.31 16 27 C -0.17 -2.00 9.94 -26.69 -0.27 -2.27 16 28 O -0.19 -2.72 10.78 5.36 0.06 -2.66 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 36 H 0.09 1.00 7.40 -51.93 -0.38 0.61 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.05 6.53 -51.93 -0.34 0.71 16 39 H 0.07 0.66 6.44 -51.93 -0.33 0.33 16 40 H 0.04 0.64 5.34 -51.93 -0.28 0.36 16 41 H 0.04 0.72 7.44 -51.93 -0.39 0.34 16 42 H 0.36 9.15 4.93 -40.82 -0.20 8.95 16 43 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 44 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.11 1.35 5.80 -51.93 -0.30 1.05 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.10 1.23 7.66 -51.93 -0.40 0.83 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -39.28 395.82 -7.49 -46.77 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.22 Total: 7.37 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -0.76 Total: 5.35 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.05 Total: -63.64 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.71 Total: -20.42 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.71 Total: 18.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.28 -7.49 -46.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725464497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.594 kcal (2) G-P(sol) polarization free energy of solvation -39.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds