Wall clock time and date at job start Tue Mar 31 2020 19:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34329 * 126.44333 * 2 1 4 4 N 1.34480 * 107.66997 * 179.76854 * 3 2 1 5 5 C 1.30252 * 108.69742 * 0.42032 * 4 3 2 6 6 C 1.50701 * 125.62046 * 179.83895 * 5 4 3 7 7 O 1.42901 * 109.46885 * 89.68993 * 6 5 4 8 8 C 1.42905 * 113.99701 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47085 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99575 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00335 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99594 * 0.02562 * 11 9 8 13 13 C 1.46501 * 120.00308 * 180.02562 * 11 9 8 14 14 H 1.09000 * 109.46894 * 0.02562 * 13 11 9 15 15 C 1.52993 * 109.47004 * 120.00028 * 13 11 9 16 16 N 1.46500 * 109.47250 * 304.99865 * 15 13 11 17 17 C 1.36946 * 119.99962 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99598 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99957 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00149 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00285 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47174 * 89.99776 * 21 19 17 23 23 H 1.48494 * 109.47263 * 210.00588 * 21 19 17 24 24 H 1.48509 * 109.46667 * 330.00261 * 21 19 17 25 25 C 1.52998 * 109.46930 * 240.00162 * 13 11 9 26 26 C 1.53004 * 117.49676 * 248.74536 * 25 13 11 27 27 C 1.53003 * 117.49680 * 180.08846 * 25 13 11 28 28 O 1.33974 * 108.76356 * 359.57660 * 5 4 3 29 29 H 1.09004 * 109.47507 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47449 * 300.00046 * 1 2 3 31 31 H 1.09007 * 109.47428 * 59.99903 * 1 2 3 32 32 H 1.08006 * 126.16162 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46889 * 329.69689 * 6 5 4 34 34 H 1.08997 * 109.47404 * 209.69726 * 6 5 4 35 35 H 1.09000 * 109.46888 * 60.00289 * 8 7 6 36 36 H 1.08996 * 109.47217 * 300.00142 * 8 7 6 37 37 H 1.09001 * 109.47060 * 90.00388 * 12 11 9 38 38 H 1.09004 * 109.47073 * 209.99877 * 12 11 9 39 39 H 1.09000 * 109.47212 * 329.99960 * 12 11 9 40 40 H 1.09001 * 109.47324 * 64.99985 * 15 13 11 41 41 H 1.09003 * 109.47102 * 185.00175 * 15 13 11 42 42 H 0.96992 * 119.99927 * 0.02562 * 16 15 13 43 43 H 0.96997 * 119.99880 * 179.97438 * 20 19 17 44 44 H 1.09001 * 115.55283 * 34.41226 * 25 13 11 45 45 H 1.08997 * 117.50189 * 0.02562 * 26 25 13 46 46 H 1.08999 * 117.49784 * 145.02515 * 26 25 13 47 47 H 1.09000 * 117.49556 * 214.98191 * 27 25 13 48 48 H 1.08992 * 117.49700 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6547 -0.0008 6 6 4.8004 -1.5340 -0.0013 7 8 5.1877 -1.8121 1.3458 8 6 6.3450 -2.6428 1.4581 9 6 6.6607 -2.8704 2.9140 10 8 5.9630 -2.3707 3.7710 11 7 7.7183 -3.6290 3.2637 12 6 8.5614 -4.2321 2.2284 13 6 8.0248 -3.8507 4.6790 14 1 7.2935 -3.3277 5.2953 15 6 7.9701 -5.3489 4.9841 16 7 6.6677 -5.8827 4.5780 17 6 6.3865 -7.2111 4.7558 18 1 7.1249 -7.8651 5.1958 19 6 5.1527 -7.7170 4.3705 20 7 4.8823 -8.9937 4.5419 21 14 3.8754 -6.5856 3.6102 22 1 4.0485 -6.5639 2.1355 23 1 2.5153 -7.0809 3.9418 24 1 4.0471 -5.2124 4.1490 25 6 9.4258 -3.3183 4.9868 26 6 10.5144 -4.3423 5.3145 27 6 9.9354 -3.4591 6.4226 28 8 2.3074 -1.0840 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.9820 2.1113 0.0004 33 1 5.6146 -1.0230 -0.5153 34 1 4.5761 -2.4686 -0.5153 35 1 7.1910 -2.1545 0.9745 36 1 6.1531 -3.6005 0.9743 37 1 9.3693 -3.5465 1.9727 38 1 8.9818 -5.1663 2.6008 39 1 7.9603 -4.4323 1.3414 40 1 8.7600 -5.8607 4.4344 41 1 8.1102 -5.5072 6.0534 42 1 6.0045 -5.2952 4.1832 43 1 4.0199 -9.3471 4.2730 44 1 9.7228 -2.4281 4.4323 45 1 10.2326 -5.3952 5.3104 46 1 11.5276 -4.1255 4.9760 47 1 10.5678 -2.6616 6.8126 48 1 9.2724 -3.9306 7.1479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725464497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:59 Heat of formation + Delta-G solvation = -24.716869 kcal Electronic energy + Delta-G solvation = -29647.412565 eV Core-core repulsion = 25512.575548 eV Total energy + Delta-G solvation = -4134.837016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.45736 -41.39732 -39.50299 -38.49105 -36.54464 -35.90336 -35.89018 -33.78692 -33.48022 -31.18612 -30.07505 -28.31020 -27.72715 -26.23627 -25.69850 -23.87257 -23.43988 -23.06769 -22.24430 -21.49869 -20.37114 -19.33318 -18.86278 -18.27574 -17.90589 -17.65646 -17.50076 -17.03790 -16.70378 -16.41159 -16.08727 -15.65928 -15.43852 -15.36403 -15.09514 -14.77777 -14.67000 -14.29966 -13.99900 -13.92862 -13.71314 -13.48087 -13.37655 -13.36091 -13.17933 -13.06682 -12.97048 -12.83085 -12.50733 -12.36209 -12.24028 -12.07254 -11.89182 -11.71719 -11.37685 -11.07616 -10.98566 -10.97677 -10.71312 -9.81102 -9.67211 -9.34727 -8.09945 -5.40838 0.17349 1.22745 1.28631 1.30643 1.38192 1.48634 1.59501 1.79494 2.37871 2.69356 2.92999 3.14605 3.21989 3.44462 3.55520 3.71860 3.86841 3.95131 3.98617 4.01617 4.07215 4.09125 4.12345 4.15398 4.18067 4.32507 4.40156 4.41746 4.55943 4.58924 4.62831 4.77118 4.83242 4.85936 4.93658 5.01440 5.05657 5.09661 5.09791 5.21323 5.22685 5.34118 5.49701 5.70311 5.78258 6.14968 6.34464 6.56565 7.00407 7.08889 7.77684 7.95295 9.11596 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.003413 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.273724 B = 8202.851924 C =10321.421821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.043 4.043 3 C -0.063 4.063 4 N -0.484 5.484 5 C 0.163 3.837 6 C 0.157 3.843 7 O -0.399 6.399 8 C 0.049 3.951 9 C 0.499 3.501 10 O -0.580 6.580 11 N -0.594 5.594 12 C 0.068 3.932 13 C 0.165 3.835 14 H 0.068 0.932 15 C 0.147 3.853 16 N -0.757 5.757 17 C -0.225 4.225 18 H 0.069 0.931 19 C -0.048 4.048 20 N -0.975 5.975 21 Si 0.933 3.067 22 H -0.266 1.266 23 H -0.293 1.293 24 H -0.284 1.284 25 C -0.160 4.160 26 C -0.166 4.166 27 C -0.175 4.175 28 O -0.215 6.215 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.215 0.785 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.032 0.968 42 H 0.359 0.641 43 H 0.259 0.741 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 19.673 -13.830 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.202 4.202 4 N -0.215 5.215 5 C -0.043 4.043 6 C 0.080 3.920 7 O -0.317 6.317 8 C -0.029 4.029 9 C 0.287 3.713 10 O -0.460 6.460 11 N -0.327 5.327 12 C -0.073 4.073 13 C 0.061 3.939 14 H 0.086 0.914 15 C 0.020 3.980 16 N -0.402 5.402 17 C -0.356 4.356 18 H 0.087 0.913 19 C -0.240 4.240 20 N -0.626 5.626 21 Si 0.762 3.238 22 H -0.191 1.191 23 H -0.220 1.220 24 H -0.211 1.211 25 C -0.179 4.179 26 C -0.203 4.203 27 C -0.213 4.213 28 O -0.102 6.102 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.232 0.768 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.191 0.809 43 H 0.068 0.932 44 H 0.138 0.862 45 H 0.112 0.888 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.048 20.063 -13.169 24.524 hybrid contribution -1.818 -0.279 -0.059 1.840 sum 3.231 19.784 -13.228 24.018 Atomic orbital electron populations 1.20568 0.80726 1.05228 1.06023 1.24485 0.96934 0.83859 1.04279 1.23644 0.86914 1.02043 1.07586 1.70376 1.24818 1.09495 1.16821 1.26108 0.84592 0.90349 1.03208 1.20844 0.89136 0.97661 0.84332 1.88015 1.46931 1.70383 1.26390 1.22495 0.90247 0.97280 0.92893 1.20977 0.80129 0.78334 0.91815 1.90708 1.50312 1.51449 1.53502 1.47750 1.28344 1.49122 1.07474 1.22132 0.95409 0.99614 0.90152 1.20638 0.96427 0.94937 0.81880 0.91400 1.21303 0.87187 0.91840 0.97660 1.42755 1.15063 1.06409 1.75955 1.19057 0.99020 0.85073 1.32420 0.91328 1.25196 0.99285 0.96695 1.02840 1.69825 1.23901 1.13427 1.55491 0.85753 0.79817 0.78538 0.79677 1.19120 1.21989 1.21085 1.22367 0.92623 1.02152 1.00752 1.23223 0.98237 0.96741 1.02082 1.23061 1.03670 1.03593 0.90948 1.84423 1.18323 1.37959 1.69471 0.90297 0.87492 0.86397 0.76845 0.85374 0.87607 0.84868 0.87582 0.88874 0.90716 0.89566 0.92739 0.95056 0.80874 0.93231 0.86190 0.88837 0.86338 0.86719 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.43 71.24 0.74 -0.05 16 2 C -0.04 -0.93 7.39 24.79 0.18 -0.74 16 3 C -0.06 -1.41 11.80 83.39 0.98 -0.43 16 4 N -0.48 -13.65 11.29 -303.82 -3.43 -17.08 16 5 C 0.16 4.53 7.97 88.34 0.70 5.23 16 6 C 0.16 3.36 6.56 71.24 0.47 3.83 16 7 O -0.40 -12.08 9.86 -129.94 -1.28 -13.36 16 8 C 0.05 1.17 4.97 71.24 0.35 1.52 16 9 C 0.50 16.94 7.45 87.66 0.65 17.59 16 10 O -0.58 -26.41 15.83 16.00 0.25 -26.16 16 11 N -0.59 -17.30 2.24 -822.58 -1.85 -19.14 16 12 C 0.07 1.32 9.61 127.77 1.23 2.55 16 13 C 0.17 5.34 2.59 44.99 0.12 5.45 16 14 H 0.07 2.71 6.90 -2.39 -0.02 2.69 16 15 C 0.15 5.54 4.14 86.38 0.36 5.90 16 16 N -0.76 -37.00 5.24 -343.46 -1.80 -38.80 16 17 C -0.22 -12.98 10.47 84.03 0.88 -12.10 16 18 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 19 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 20 N -0.98 -62.95 13.97 21.65 0.30 -62.65 16 21 Si 0.93 49.06 27.74 68.60 1.90 50.96 16 22 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.29 -15.49 7.11 99.48 0.71 -14.78 16 24 H -0.28 -15.44 6.52 99.48 0.65 -14.79 16 25 C -0.16 -3.72 5.48 -10.79 -0.06 -3.77 16 26 C -0.17 -3.29 9.59 30.62 0.29 -2.99 16 27 C -0.18 -3.76 9.94 30.62 0.30 -3.46 16 28 O -0.21 -6.05 10.78 -3.75 -0.04 -6.09 16 29 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.21 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.13 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.11 2.08 7.40 -2.39 -0.02 2.06 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.63 6.53 -2.38 -0.02 1.61 16 39 H 0.09 1.36 6.44 -2.39 -0.02 1.34 16 40 H 0.05 1.90 5.34 -2.39 -0.01 1.89 16 41 H 0.03 1.24 7.44 -2.39 -0.02 1.22 16 42 H 0.36 18.21 4.93 -92.71 -0.46 17.75 16 43 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 44 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.09 2.15 5.80 -2.39 -0.01 2.14 16 46 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.08 2.05 7.66 -2.39 -0.02 2.03 16 Total: -1.00 -90.08 395.82 2.20 -87.87 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.47 Total: 28.35 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 7.68 Total: 16.10 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -6.77 Total: -137.67 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -1.07 Total: -45.61 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.90 Total: 50.96 kcal Total: -90.08 2.20 -87.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725464497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.155 kcal (2) G-P(sol) polarization free energy of solvation -90.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds