Wall clock time and date at job start Tue Mar 31 2020 19:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34330 * 126.43665 * 2 1 4 4 N 1.34479 * 107.66403 * 179.72306 * 3 2 1 5 5 C 1.30256 * 108.70022 * 0.42570 * 4 3 2 6 6 C 1.50705 * 125.61699 * 179.83875 * 5 4 3 7 7 O 1.42899 * 109.47106 * 89.68877 * 6 5 4 8 8 C 1.42901 * 113.99732 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46949 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99758 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99755 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99708 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47120 * 325.00327 * 12 11 9 14 14 C 1.52999 * 109.47051 * 85.00090 * 12 11 9 15 15 C 1.53002 * 109.47179 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46995 * 299.99723 * 15 14 12 17 17 C 1.53008 * 109.46808 * 60.00163 * 16 15 14 18 18 H 1.08999 * 109.47058 * 59.99638 * 17 16 15 19 19 N 1.46499 * 109.47014 * 179.97438 * 17 16 15 20 20 C 1.36939 * 119.99933 * 275.27473 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00466 * 24 22 20 27 27 H 1.48506 * 109.47018 * 240.00565 * 24 22 20 28 28 C 1.52992 * 109.47176 * 204.99833 * 12 11 9 29 29 O 1.33959 * 108.76098 * 359.57129 * 5 4 3 30 30 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47568 * 299.99739 * 1 2 3 32 32 H 1.09003 * 109.47470 * 60.00252 * 1 2 3 33 33 H 1.08000 * 126.16945 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.47055 * 329.69126 * 6 5 4 35 35 H 1.08994 * 109.46923 * 209.69452 * 6 5 4 36 36 H 1.08998 * 109.46969 * 60.00792 * 8 7 6 37 37 H 1.08999 * 109.47495 * 300.00576 * 8 7 6 38 38 H 0.96997 * 119.99570 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.47368 * 299.99995 * 14 12 11 40 40 H 1.09000 * 109.47077 * 59.99600 * 14 12 11 41 41 H 1.08999 * 109.47056 * 60.00198 * 15 14 12 42 42 H 1.09000 * 109.46999 * 179.97438 * 15 14 12 43 43 H 1.09000 * 109.47108 * 300.00306 * 16 15 14 44 44 H 1.08995 * 109.46860 * 179.97438 * 16 15 14 45 45 H 0.97001 * 119.99790 * 94.99446 * 19 17 16 46 46 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 47 47 H 1.09009 * 109.47102 * 60.00236 * 28 12 11 48 48 H 1.08999 * 109.47499 * 300.00261 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0807 0.0000 4 7 3.5781 0.6479 0.0062 5 6 3.5765 -0.6546 0.0008 6 6 4.8005 -1.5338 0.0013 7 8 5.1870 -1.8113 1.3488 8 6 6.3436 -2.6428 1.4621 9 6 6.6585 -2.8696 2.9183 10 8 5.9613 -2.3682 3.7747 11 7 7.7155 -3.6289 3.2689 12 6 8.0218 -3.8489 4.6845 13 1 7.7811 -2.9502 5.2523 14 6 7.1915 -5.0217 5.2097 15 6 7.5119 -5.2520 6.6880 16 6 9.0003 -5.5708 6.8435 17 6 9.8307 -4.3979 6.3183 18 1 9.5902 -3.4993 6.8864 19 7 11.2557 -4.7029 6.4677 20 6 11.8880 -4.4545 7.6567 21 1 11.3371 -4.0296 8.4828 22 6 13.2370 -4.7489 7.8003 23 7 13.9084 -5.2663 6.7933 24 14 14.0996 -4.4094 9.4219 25 1 13.1304 -3.8302 10.3865 26 1 14.6431 -5.6786 9.9687 27 1 15.2111 -3.4498 9.1999 28 6 9.5101 -4.1675 4.8406 29 8 2.3075 -1.0839 0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.9820 2.1113 -0.0004 34 1 5.6150 -1.0230 -0.5124 35 1 4.5766 -2.4686 -0.5124 36 1 7.1902 -2.1554 0.9787 37 1 6.1513 -3.6007 0.9788 38 1 8.2732 -4.0296 2.5839 39 1 6.1311 -4.7949 5.0985 40 1 7.4322 -5.9205 4.6418 41 1 7.2714 -4.3534 7.2561 42 1 6.9200 -6.0872 7.0622 43 1 9.2406 -6.4694 6.2753 44 1 9.2286 -5.7344 7.8967 45 1 11.7504 -5.0846 5.7258 46 1 14.8511 -5.4717 6.8935 47 1 10.1017 -3.3319 4.4665 48 1 9.7509 -5.0662 4.2728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731696531.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:26 Heat of formation + Delta-G solvation = -55.492733 kcal Electronic energy + Delta-G solvation = -28123.449479 eV Core-core repulsion = 23987.277921 eV Total energy + Delta-G solvation = -4136.171558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.71495 -40.11551 -38.51245 -37.53409 -35.11611 -34.68279 -33.37616 -33.17287 -31.14640 -30.47107 -29.40737 -27.97801 -27.13735 -25.51109 -23.74029 -22.71514 -22.11799 -21.54901 -21.43565 -20.38368 -19.44655 -17.97024 -17.65977 -17.20795 -16.84122 -16.68297 -16.57946 -15.80631 -15.28826 -15.06576 -14.56180 -14.48532 -14.38071 -13.92943 -13.77273 -13.60325 -13.55443 -13.50874 -13.14637 -12.88247 -12.79868 -12.54590 -12.37026 -12.14084 -12.03826 -11.68904 -11.00050 -10.94768 -10.91330 -10.89052 -10.72639 -10.35433 -10.30409 -10.27086 -10.17140 -10.03106 -9.70390 -9.58016 -9.13129 -9.01392 -8.87259 -6.96501 -5.77562 -3.05994 0.90698 1.99731 2.27717 2.52938 2.77447 3.43301 3.46511 3.49762 3.51424 3.97205 4.27938 4.45560 4.53520 4.57851 4.59814 4.67432 4.73568 4.81288 4.89894 4.96191 4.98563 5.09308 5.10158 5.32137 5.43210 5.50006 5.59955 5.63257 5.68315 5.73904 5.86949 5.87968 5.96884 6.02132 6.14248 6.29196 6.31943 6.37485 6.52078 6.55326 6.62181 6.72672 6.96671 7.12177 7.32572 7.44795 7.71464 8.16494 8.41316 9.52683 10.09715 10.44530 11.45255 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.001632 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.534852 B =17149.883280 C =17432.751165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.186 3.814 6 C 0.161 3.839 7 O -0.356 6.356 8 C 0.045 3.955 9 C 0.513 3.487 10 O -0.518 6.518 11 N -0.722 5.722 12 C 0.150 3.850 13 H 0.088 0.912 14 C -0.124 4.124 15 C -0.115 4.115 16 C -0.137 4.137 17 C 0.183 3.817 18 H 0.049 0.951 19 N -0.724 5.724 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.129 4.129 29 O -0.194 6.194 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.400 0.600 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.069 0.931 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.492 5.587 -19.147 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.020 4.020 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.035 4.035 9 C 0.297 3.703 10 O -0.393 6.393 11 N -0.374 5.374 12 C 0.046 3.954 13 H 0.106 0.894 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.177 4.177 17 C 0.072 3.928 18 H 0.067 0.933 19 N -0.364 5.364 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.168 4.168 29 O -0.081 6.081 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.234 0.766 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.487 6.398 -18.166 31.154 hybrid contribution 0.521 -0.668 0.081 0.851 sum -23.965 5.730 -18.085 30.566 Atomic orbital electron populations 1.20322 0.83704 1.04571 1.04084 1.23588 0.95206 0.84508 1.05920 1.23124 0.87568 1.00593 1.07136 1.70422 1.23336 1.09052 1.15952 1.25502 0.83877 0.89951 1.02677 1.20481 0.89121 0.96448 0.85565 1.88083 1.45620 1.69774 1.23900 1.22297 0.89540 0.95967 0.95722 1.20081 0.81132 0.78981 0.90121 1.90754 1.48588 1.48294 1.51625 1.46032 1.30005 1.52017 1.09350 1.21047 0.95285 0.99099 0.79930 0.89369 1.21887 0.99478 0.97849 0.97069 1.21489 0.97697 1.01186 0.94998 1.22293 0.92915 1.00443 1.02048 1.20095 0.85825 0.95336 0.91527 0.93327 1.42403 1.03752 1.75904 1.14386 1.19304 0.92189 1.34389 0.90892 0.91067 1.24730 0.96696 1.01901 0.97666 1.69671 1.08636 1.49591 1.30339 0.86133 0.79583 0.77365 0.83234 1.20530 1.21917 1.21902 1.22077 0.92945 1.01980 0.99749 1.84389 1.17710 1.36637 1.69333 0.90214 0.89004 0.89147 0.79659 0.88319 0.89866 0.89464 0.89690 0.76625 0.92180 0.92019 0.92154 0.92489 0.92655 0.91877 0.78350 0.93618 0.91239 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.43 36.01 0.38 0.09 16 2 C -0.04 -0.33 7.39 -35.69 -0.26 -0.60 16 3 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.46 -5.54 11.29 -11.10 -0.13 -5.67 16 5 C 0.19 2.06 7.97 -12.94 -0.10 1.96 16 6 C 0.16 1.30 6.56 36.01 0.24 1.53 16 7 O -0.36 -4.11 9.86 -55.14 -0.54 -4.65 16 8 C 0.04 0.37 6.42 36.01 0.23 0.60 16 9 C 0.51 6.46 7.87 -10.98 -0.09 6.38 16 10 O -0.52 -9.19 16.16 -14.35 -0.23 -9.43 16 11 N -0.72 -7.95 5.08 -53.81 -0.27 -8.23 16 12 C 0.15 2.07 2.46 -67.94 -0.17 1.90 16 13 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 14 C -0.12 -1.67 5.49 -26.73 -0.15 -1.81 16 15 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 16 C -0.14 -2.38 5.50 -26.72 -0.15 -2.53 16 17 C 0.18 3.51 2.77 -67.95 -0.19 3.32 16 18 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 19 N -0.72 -17.67 5.12 -53.45 -0.27 -17.94 16 20 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C -0.13 -1.98 4.86 -26.76 -0.13 -2.11 16 29 O -0.19 -2.09 10.77 5.40 0.06 -2.03 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.40 3.13 8.60 -40.82 -0.35 2.78 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.38 9.86 7.80 -40.82 -0.32 9.55 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 401.48 15.07 6.05 6.05 Total: -1.00 -37.17 401.48 -8.43 -45.60 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.79 Total: 6.95 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.00 Total: -0.84 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.05 Total: -58.98 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.72 Total: -16.11 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.17 -8.43 -45.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731696531.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.890 kcal (2) G-P(sol) polarization free energy of solvation -37.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds