Wall clock time and date at job start Tue Mar 31 2020 19:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34330 * 126.43665 * 2 1 4 4 N 1.34479 * 107.66403 * 179.72306 * 3 2 1 5 5 C 1.30256 * 108.70022 * 0.42570 * 4 3 2 6 6 C 1.50705 * 125.61699 * 179.83875 * 5 4 3 7 7 O 1.42899 * 109.47106 * 89.68877 * 6 5 4 8 8 C 1.42901 * 113.99732 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46949 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99758 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99755 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99708 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47120 * 325.00327 * 12 11 9 14 14 C 1.52999 * 109.47051 * 85.00090 * 12 11 9 15 15 C 1.53002 * 109.47179 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46995 * 299.99723 * 15 14 12 17 17 C 1.53008 * 109.46808 * 60.00163 * 16 15 14 18 18 H 1.08999 * 109.47058 * 59.99638 * 17 16 15 19 19 N 1.46499 * 109.47014 * 179.97438 * 17 16 15 20 20 C 1.36939 * 119.99933 * 275.27473 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00466 * 24 22 20 27 27 H 1.48506 * 109.47018 * 240.00565 * 24 22 20 28 28 C 1.52992 * 109.47176 * 204.99833 * 12 11 9 29 29 O 1.33959 * 108.76098 * 359.57129 * 5 4 3 30 30 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47568 * 299.99739 * 1 2 3 32 32 H 1.09003 * 109.47470 * 60.00252 * 1 2 3 33 33 H 1.08000 * 126.16945 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.47055 * 329.69126 * 6 5 4 35 35 H 1.08994 * 109.46923 * 209.69452 * 6 5 4 36 36 H 1.08998 * 109.46969 * 60.00792 * 8 7 6 37 37 H 1.08999 * 109.47495 * 300.00576 * 8 7 6 38 38 H 0.96997 * 119.99570 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.47368 * 299.99995 * 14 12 11 40 40 H 1.09000 * 109.47077 * 59.99600 * 14 12 11 41 41 H 1.08999 * 109.47056 * 60.00198 * 15 14 12 42 42 H 1.09000 * 109.46999 * 179.97438 * 15 14 12 43 43 H 1.09000 * 109.47108 * 300.00306 * 16 15 14 44 44 H 1.08995 * 109.46860 * 179.97438 * 16 15 14 45 45 H 0.97001 * 119.99790 * 94.99446 * 19 17 16 46 46 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 47 47 H 1.09009 * 109.47102 * 60.00236 * 28 12 11 48 48 H 1.08999 * 109.47499 * 300.00261 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0807 0.0000 4 7 3.5781 0.6479 0.0062 5 6 3.5765 -0.6546 0.0008 6 6 4.8005 -1.5338 0.0013 7 8 5.1870 -1.8113 1.3488 8 6 6.3436 -2.6428 1.4621 9 6 6.6585 -2.8696 2.9183 10 8 5.9613 -2.3682 3.7747 11 7 7.7155 -3.6289 3.2689 12 6 8.0218 -3.8489 4.6845 13 1 7.7811 -2.9502 5.2523 14 6 7.1915 -5.0217 5.2097 15 6 7.5119 -5.2520 6.6880 16 6 9.0003 -5.5708 6.8435 17 6 9.8307 -4.3979 6.3183 18 1 9.5902 -3.4993 6.8864 19 7 11.2557 -4.7029 6.4677 20 6 11.8880 -4.4545 7.6567 21 1 11.3371 -4.0296 8.4828 22 6 13.2370 -4.7489 7.8003 23 7 13.9084 -5.2663 6.7933 24 14 14.0996 -4.4094 9.4219 25 1 13.1304 -3.8302 10.3865 26 1 14.6431 -5.6786 9.9687 27 1 15.2111 -3.4498 9.1999 28 6 9.5101 -4.1675 4.8406 29 8 2.3075 -1.0839 0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.9820 2.1113 -0.0004 34 1 5.6150 -1.0230 -0.5124 35 1 4.5766 -2.4686 -0.5124 36 1 7.1902 -2.1554 0.9787 37 1 6.1513 -3.6007 0.9788 38 1 8.2732 -4.0296 2.5839 39 1 6.1311 -4.7949 5.0985 40 1 7.4322 -5.9205 4.6418 41 1 7.2714 -4.3534 7.2561 42 1 6.9200 -6.0872 7.0622 43 1 9.2406 -6.4694 6.2753 44 1 9.2286 -5.7344 7.8967 45 1 11.7504 -5.0846 5.7258 46 1 14.8511 -5.4717 6.8935 47 1 10.1017 -3.3319 4.4665 48 1 9.7509 -5.0662 4.2728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731696531.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:25 Heat of formation + Delta-G solvation = -84.179770 kcal Electronic energy + Delta-G solvation = -28124.693442 eV Core-core repulsion = 23987.277921 eV Total energy + Delta-G solvation = -4137.415521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.40508 -41.14220 -39.55799 -38.54684 -36.22186 -35.85169 -34.84153 -33.72371 -32.94619 -31.36417 -30.31559 -29.49038 -27.98477 -26.09881 -25.69389 -23.39667 -23.34356 -22.80774 -22.17947 -21.47628 -20.82963 -19.23718 -18.64175 -18.33963 -17.76176 -17.58190 -17.26548 -16.92564 -16.36688 -16.12622 -15.79719 -15.61067 -15.35794 -15.24385 -15.02518 -14.97113 -14.54481 -14.27793 -14.11584 -13.88517 -13.63215 -13.41220 -13.30822 -13.16188 -13.00649 -12.90896 -12.83550 -12.46050 -12.25534 -12.13041 -12.02186 -11.97396 -11.65135 -11.64965 -11.47750 -11.37856 -10.90166 -10.87812 -10.78684 -10.06561 -9.76840 -8.99039 -7.93990 -5.21337 0.23116 1.34654 1.47352 1.47909 1.57561 1.59298 1.63392 1.95044 2.56473 2.82457 3.30885 3.39703 3.63275 3.72836 3.78186 3.86837 4.00236 4.04872 4.08664 4.19537 4.24789 4.27539 4.31062 4.33611 4.45404 4.47514 4.54002 4.58648 4.62107 4.67453 4.67743 4.77526 4.98644 5.02745 5.12410 5.14270 5.17359 5.22465 5.25498 5.35766 5.47096 5.50965 5.54327 5.65929 5.84303 6.29332 6.58853 6.62418 7.26613 7.35802 8.11354 8.35535 9.29457 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.001632 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.534852 B =17149.883280 C =17432.751165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.069 4.069 4 N -0.492 5.492 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.398 6.398 8 C 0.049 3.951 9 C 0.507 3.493 10 O -0.578 6.578 11 N -0.707 5.707 12 C 0.159 3.841 13 H 0.062 0.938 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.126 4.126 17 C 0.175 3.825 18 H 0.032 0.968 19 N -0.734 5.734 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.967 3.033 25 H -0.270 1.270 26 H -0.293 1.293 27 H -0.294 1.294 28 C -0.113 4.113 29 O -0.209 6.209 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.209 0.791 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.419 0.581 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.040 0.960 45 H 0.375 0.625 46 H 0.250 0.750 47 H 0.062 0.938 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.896 5.056 -20.665 33.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.207 4.207 4 N -0.223 5.223 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.317 6.317 8 C -0.030 4.030 9 C 0.294 3.706 10 O -0.457 6.457 11 N -0.360 5.360 12 C 0.054 3.946 13 H 0.080 0.920 14 C -0.154 4.154 15 C -0.146 4.146 16 C -0.166 4.166 17 C 0.066 3.934 18 H 0.051 0.949 19 N -0.374 5.374 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.797 3.203 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.221 1.221 28 C -0.152 4.152 29 O -0.096 6.096 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.225 0.775 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.257 0.743 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.918 5.859 -19.716 33.087 hybrid contribution 0.862 -0.451 0.542 1.114 sum -25.056 5.408 -19.173 32.010 Atomic orbital electron populations 1.20558 0.80627 1.05437 1.05855 1.24427 0.96856 0.83792 1.04116 1.23604 0.87085 1.02088 1.07923 1.70390 1.24914 1.10040 1.16976 1.26188 0.84779 0.90242 1.02866 1.20809 0.88613 0.97797 0.84413 1.88009 1.46847 1.70706 1.26117 1.22445 0.89962 0.98079 0.92498 1.20935 0.80217 0.77664 0.91760 1.90731 1.50645 1.50648 1.53681 1.45808 1.30006 1.51654 1.08554 1.20719 0.94033 0.98278 0.81581 0.91965 1.21808 0.99125 0.98196 0.96298 1.21421 0.95511 1.01655 0.96063 1.22091 0.94679 0.99424 1.00388 1.20310 0.83550 0.95307 0.94210 0.94941 1.42555 1.05719 1.75922 1.13217 1.19618 0.92488 1.32991 0.91845 0.91125 1.25459 0.97536 1.02765 1.00757 1.69803 1.08575 1.51297 1.32113 0.85161 0.78377 0.76882 0.79898 1.19433 1.22026 1.22111 1.21849 0.93974 1.02423 0.96932 1.84394 1.18065 1.37586 1.69525 0.89770 0.87611 0.86778 0.77451 0.86400 0.86588 0.86249 0.85547 0.74327 0.92362 0.90197 0.92779 0.90591 0.92474 0.94153 0.79315 0.94076 0.91900 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 71.24 0.74 0.31 16 2 C -0.04 -0.64 7.39 24.79 0.18 -0.45 16 3 C -0.07 -1.27 11.80 83.39 0.98 -0.29 16 4 N -0.49 -11.98 11.29 -303.83 -3.43 -15.41 16 5 C 0.17 3.59 7.97 88.34 0.70 4.30 16 6 C 0.16 2.29 6.56 71.24 0.47 2.76 16 7 O -0.40 -8.62 9.86 -129.94 -1.28 -9.90 16 8 C 0.05 0.67 6.42 71.24 0.46 1.13 16 9 C 0.51 12.04 7.87 87.66 0.69 12.73 16 10 O -0.58 -20.66 16.16 16.03 0.26 -20.40 16 11 N -0.71 -14.10 5.08 -442.55 -2.25 -16.35 16 12 C 0.16 4.22 2.46 44.99 0.11 4.33 16 13 H 0.06 2.01 7.58 -2.39 -0.02 2.00 16 14 C -0.12 -2.89 5.49 30.59 0.17 -2.72 16 15 C -0.11 -2.98 5.92 30.60 0.18 -2.80 16 16 C -0.13 -4.33 5.50 30.60 0.17 -4.16 16 17 C 0.18 6.75 2.77 44.98 0.12 6.88 16 18 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 19 N -0.73 -36.21 5.12 -323.01 -1.65 -37.86 16 20 C -0.24 -13.16 9.93 84.03 0.83 -12.33 16 21 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 22 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 23 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 24 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 C -0.11 -3.37 4.86 30.57 0.15 -3.22 16 29 O -0.21 -4.41 10.77 -3.59 -0.04 -4.44 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.42 5.19 8.60 -92.71 -0.80 4.39 16 39 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.37 19.50 7.80 -92.71 -0.72 18.77 16 46 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 47 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 48 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -84.12 401.48 -0.20 -84.32 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.55 Total: 27.04 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 6.43 Total: 2.77 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -7.05 Total: -127.73 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.06 Total: -34.74 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -84.12 -0.20 -84.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731696531.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.141 kcal (2) G-P(sol) polarization free energy of solvation -84.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds