Wall clock time and date at job start Tue Mar 31 2020 19:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34325 * 126.44374 * 2 1 4 4 N 1.34485 * 107.66767 * 179.97438 * 3 2 1 5 5 C 1.30250 * 108.70025 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.62069 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.46918 * 90.02440 * 6 5 4 8 8 C 1.42901 * 114.00264 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47770 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99872 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00471 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00368 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47013 * 35.00250 * 12 11 9 14 14 C 1.52999 * 109.46962 * 275.00286 * 12 11 9 15 15 C 1.53008 * 109.47045 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.46988 * 59.99791 * 15 14 12 17 17 C 1.52999 * 109.47398 * 299.99993 * 16 15 14 18 18 H 1.08996 * 109.47227 * 300.00173 * 17 16 15 19 19 N 1.46497 * 109.47060 * 180.02562 * 17 16 15 20 20 C 1.36934 * 120.00295 * 85.00524 * 19 17 16 21 21 H 1.07997 * 120.00011 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99875 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00458 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99816 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47105 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47667 * 119.99642 * 24 22 20 27 27 H 1.48499 * 109.46990 * 239.99902 * 24 22 20 28 28 C 1.52997 * 109.47429 * 155.00038 * 12 11 9 29 29 O 1.33974 * 108.76338 * 359.97438 * 5 4 3 30 30 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47052 * 300.02532 * 1 2 3 32 32 H 1.09003 * 109.46787 * 60.02079 * 1 2 3 33 33 H 1.08000 * 126.17016 * 359.96108 * 3 2 1 34 34 H 1.08994 * 109.47329 * 210.02264 * 6 5 4 35 35 H 1.08998 * 109.47114 * 330.03077 * 6 5 4 36 36 H 1.09003 * 109.47135 * 300.00751 * 8 7 6 37 37 H 1.09008 * 109.46971 * 59.99730 * 8 7 6 38 38 H 0.97009 * 120.00179 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.47227 * 299.99833 * 14 12 11 40 40 H 1.09000 * 109.47271 * 59.99835 * 14 12 11 41 41 H 1.08993 * 109.47052 * 180.02562 * 15 14 12 42 42 H 1.09004 * 109.46760 * 300.00192 * 15 14 12 43 43 H 1.08996 * 109.47073 * 60.00261 * 16 15 14 44 44 H 1.09004 * 109.47050 * 180.02562 * 16 15 14 45 45 H 0.97005 * 119.99475 * 264.99724 * 19 17 16 46 46 H 0.97000 * 120.00007 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.47602 * 300.00616 * 28 12 11 48 48 H 1.09007 * 109.47320 * 60.00305 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8004 -1.5341 0.0003 7 8 5.1868 -1.8127 1.3476 8 6 6.3440 -2.6435 1.4604 9 6 6.6594 -2.8705 2.9164 10 8 5.9617 -2.3705 3.7732 11 7 7.7163 -3.6300 3.2665 12 6 8.0226 -3.8511 4.6820 13 1 7.0941 -3.9103 5.2497 14 6 8.8690 -2.6901 5.2080 15 6 9.1884 -2.9207 6.6865 16 6 9.9651 -4.2296 6.8422 17 6 9.1188 -5.3906 6.3162 18 1 8.1900 -5.4495 6.8837 19 7 9.8623 -6.6440 6.4660 20 6 9.8232 -7.3257 7.6529 21 1 9.2445 -6.9392 8.4788 22 6 10.5282 -8.5130 7.7948 23 7 11.2338 -8.9839 6.7885 24 14 10.4754 -9.4427 9.4143 25 1 9.6180 -8.7082 10.3790 26 1 9.9164 -10.7997 9.1882 27 1 11.8502 -9.5589 9.9634 28 6 8.7996 -5.1599 4.8373 29 8 2.3074 -1.0841 0.0002 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5135 -0.8902 33 1 1.9822 2.1112 -0.0006 34 1 4.5763 -2.4686 -0.5140 35 1 5.6149 -1.0230 -0.5129 36 1 6.1524 -3.6011 0.9761 37 1 7.1904 -2.1551 0.9775 38 1 8.2742 -4.0302 2.5813 39 1 9.7975 -2.6309 4.6403 40 1 8.3154 -1.7577 5.0974 41 1 9.7909 -2.0934 7.0613 42 1 8.2596 -2.9797 7.2539 43 1 10.8938 -4.1707 6.2748 44 1 10.1923 -4.3942 7.8956 45 1 10.3823 -6.9910 5.7242 46 1 11.7261 -9.8138 6.8877 47 1 8.1967 -5.9871 4.4624 48 1 9.7282 -5.1008 4.2695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731696532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:30 Heat of formation + Delta-G solvation = -55.618089 kcal Electronic energy + Delta-G solvation = -28124.172356 eV Core-core repulsion = 23987.995363 eV Total energy + Delta-G solvation = -4136.176994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.71205 -40.11392 -38.50986 -37.53133 -35.11530 -34.68234 -33.37656 -33.16966 -31.14569 -30.46995 -29.40640 -27.97704 -27.13698 -25.50935 -23.74202 -22.71179 -22.11579 -21.54894 -21.43460 -20.38151 -19.44678 -17.96933 -17.65754 -17.20924 -16.83655 -16.69658 -16.57239 -15.80477 -15.25901 -15.04982 -14.72389 -14.43450 -14.27327 -13.92625 -13.80119 -13.59656 -13.55495 -13.51206 -13.14996 -12.89509 -12.75865 -12.54908 -12.38165 -12.13662 -12.03474 -11.69100 -11.00186 -10.94567 -10.92085 -10.89456 -10.72560 -10.35357 -10.30392 -10.27043 -10.17083 -10.03302 -9.70679 -9.57956 -9.13025 -9.01420 -8.87512 -6.96860 -5.77904 -3.06346 0.90949 2.00037 2.27369 2.52958 2.77476 3.42889 3.46388 3.49367 3.51000 3.97180 4.28355 4.45810 4.53721 4.57482 4.59940 4.67430 4.74108 4.80798 4.90635 4.96303 4.98793 5.09747 5.10490 5.32493 5.43508 5.49976 5.60214 5.63743 5.68361 5.73942 5.87332 5.87744 5.96989 6.02205 6.14606 6.29495 6.32063 6.37525 6.52396 6.55444 6.62378 6.72799 6.96628 7.12156 7.32215 7.44813 7.71082 8.16517 8.40899 9.52297 10.09399 10.44206 11.44883 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.001647 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.287465 B =16995.014549 C =17288.866656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.038 4.038 3 C -0.046 4.046 4 N -0.458 5.458 5 C 0.187 3.813 6 C 0.161 3.839 7 O -0.356 6.356 8 C 0.045 3.955 9 C 0.513 3.487 10 O -0.518 6.518 11 N -0.721 5.721 12 C 0.151 3.849 13 H 0.088 0.912 14 C -0.124 4.124 15 C -0.115 4.115 16 C -0.136 4.136 17 C 0.183 3.817 18 H 0.049 0.951 19 N -0.724 5.724 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.129 4.129 29 O -0.194 6.194 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.400 0.600 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.069 0.931 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 18.075 -19.130 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.185 4.185 4 N -0.189 5.189 5 C -0.020 4.020 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.035 4.035 9 C 0.297 3.703 10 O -0.393 6.393 11 N -0.374 5.374 12 C 0.046 3.954 13 H 0.106 0.894 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.177 4.177 17 C 0.072 3.928 18 H 0.067 0.933 19 N -0.364 5.364 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.168 4.168 29 O -0.080 6.080 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.203 0.797 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.234 0.766 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.625 18.717 -18.155 30.398 hybrid contribution 0.084 -1.271 0.079 1.276 sum -15.541 17.446 -18.075 29.540 Atomic orbital electron populations 1.20327 0.83699 1.04615 1.04075 1.23595 0.95223 0.84500 1.05829 1.23114 0.87568 1.00577 1.07221 1.70414 1.23340 1.09039 1.16060 1.25495 0.83896 0.89940 1.02649 1.20478 0.89101 0.96475 0.85569 1.88082 1.45596 1.69792 1.23907 1.22295 0.89456 0.96048 0.95724 1.20077 0.80931 0.79187 0.90123 1.90756 1.48898 1.48032 1.51589 1.46035 1.29969 1.52039 1.09358 1.21050 0.99203 0.95177 0.79923 0.89390 1.21889 0.99470 0.97899 0.97055 1.21488 1.00491 0.98384 0.95002 1.22287 0.99164 0.94197 1.02040 1.20114 0.94327 0.86838 0.91495 0.93331 1.42401 1.57409 1.22092 1.14546 1.19302 1.24246 1.02212 0.91011 0.91066 1.24730 1.00260 0.98336 0.97672 1.69668 1.35623 1.22553 1.30392 0.86135 0.77181 0.79783 0.83223 1.20533 1.21914 1.21909 1.22100 0.99767 0.95138 0.99753 1.84402 1.17704 1.36620 1.69290 0.90175 0.88997 0.89146 0.79670 0.89817 0.88365 0.89588 0.89568 0.76624 0.91996 0.92140 0.92468 0.92164 0.92644 0.91883 0.78349 0.93614 0.91272 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.01 0.38 0.08 16 2 C -0.04 -0.33 7.39 -35.69 -0.26 -0.59 16 3 C -0.05 -0.43 11.80 -17.77 -0.21 -0.64 16 4 N -0.46 -5.49 11.29 -11.10 -0.13 -5.61 16 5 C 0.19 2.06 7.97 -12.95 -0.10 1.96 16 6 C 0.16 1.30 6.56 36.00 0.24 1.53 16 7 O -0.36 -4.11 9.86 -55.14 -0.54 -4.65 16 8 C 0.04 0.37 6.42 36.00 0.23 0.60 16 9 C 0.51 6.46 7.87 -10.99 -0.09 6.38 16 10 O -0.52 -9.20 16.16 -14.35 -0.23 -9.43 16 11 N -0.72 -7.95 5.08 -53.81 -0.27 -8.23 16 12 C 0.15 2.07 2.45 -67.93 -0.17 1.91 16 13 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 14 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 15 C -0.11 -1.67 5.92 -26.73 -0.16 -1.82 16 16 C -0.14 -2.38 5.50 -26.73 -0.15 -2.53 16 17 C 0.18 3.51 2.77 -67.91 -0.19 3.32 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 N -0.72 -17.64 5.12 -53.41 -0.27 -17.92 16 20 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C -0.13 -1.97 4.86 -26.71 -0.13 -2.10 16 29 O -0.19 -2.11 10.78 5.34 0.06 -2.05 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.40 3.13 8.60 -40.82 -0.35 2.78 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 46 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 401.49 15.07 6.05 6.05 Total: -1.00 -37.10 401.49 -8.43 -45.53 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.79 Total: 6.99 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.00 Total: -0.86 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.05 Total: -58.86 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.72 Total: -16.13 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.10 -8.43 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731696532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.088 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds