Wall clock time and date at job start Tue Mar 31 2020 19:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34325 * 126.44374 * 2 1 4 4 N 1.34485 * 107.66767 * 179.97438 * 3 2 1 5 5 C 1.30250 * 108.70025 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.62069 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.46918 * 90.02440 * 6 5 4 8 8 C 1.42901 * 114.00264 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47770 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99872 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00471 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00368 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47013 * 35.00250 * 12 11 9 14 14 C 1.52999 * 109.46962 * 275.00286 * 12 11 9 15 15 C 1.53008 * 109.47045 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.46988 * 59.99791 * 15 14 12 17 17 C 1.52999 * 109.47398 * 299.99993 * 16 15 14 18 18 H 1.08996 * 109.47227 * 300.00173 * 17 16 15 19 19 N 1.46497 * 109.47060 * 180.02562 * 17 16 15 20 20 C 1.36934 * 120.00295 * 85.00524 * 19 17 16 21 21 H 1.07997 * 120.00011 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99875 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00458 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99816 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47105 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47667 * 119.99642 * 24 22 20 27 27 H 1.48499 * 109.46990 * 239.99902 * 24 22 20 28 28 C 1.52997 * 109.47429 * 155.00038 * 12 11 9 29 29 O 1.33974 * 108.76338 * 359.97438 * 5 4 3 30 30 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47052 * 300.02532 * 1 2 3 32 32 H 1.09003 * 109.46787 * 60.02079 * 1 2 3 33 33 H 1.08000 * 126.17016 * 359.96108 * 3 2 1 34 34 H 1.08994 * 109.47329 * 210.02264 * 6 5 4 35 35 H 1.08998 * 109.47114 * 330.03077 * 6 5 4 36 36 H 1.09003 * 109.47135 * 300.00751 * 8 7 6 37 37 H 1.09008 * 109.46971 * 59.99730 * 8 7 6 38 38 H 0.97009 * 120.00179 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.47227 * 299.99833 * 14 12 11 40 40 H 1.09000 * 109.47271 * 59.99835 * 14 12 11 41 41 H 1.08993 * 109.47052 * 180.02562 * 15 14 12 42 42 H 1.09004 * 109.46760 * 300.00192 * 15 14 12 43 43 H 1.08996 * 109.47073 * 60.00261 * 16 15 14 44 44 H 1.09004 * 109.47050 * 180.02562 * 16 15 14 45 45 H 0.97005 * 119.99475 * 264.99724 * 19 17 16 46 46 H 0.97000 * 120.00007 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.47602 * 300.00616 * 28 12 11 48 48 H 1.09007 * 109.47320 * 60.00305 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8004 -1.5341 0.0003 7 8 5.1868 -1.8127 1.3476 8 6 6.3440 -2.6435 1.4604 9 6 6.6594 -2.8705 2.9164 10 8 5.9617 -2.3705 3.7732 11 7 7.7163 -3.6300 3.2665 12 6 8.0226 -3.8511 4.6820 13 1 7.0941 -3.9103 5.2497 14 6 8.8690 -2.6901 5.2080 15 6 9.1884 -2.9207 6.6865 16 6 9.9651 -4.2296 6.8422 17 6 9.1188 -5.3906 6.3162 18 1 8.1900 -5.4495 6.8837 19 7 9.8623 -6.6440 6.4660 20 6 9.8232 -7.3257 7.6529 21 1 9.2445 -6.9392 8.4788 22 6 10.5282 -8.5130 7.7948 23 7 11.2338 -8.9839 6.7885 24 14 10.4754 -9.4427 9.4143 25 1 9.6180 -8.7082 10.3790 26 1 9.9164 -10.7997 9.1882 27 1 11.8502 -9.5589 9.9634 28 6 8.7996 -5.1599 4.8373 29 8 2.3074 -1.0841 0.0002 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5135 -0.8902 33 1 1.9822 2.1112 -0.0006 34 1 4.5763 -2.4686 -0.5140 35 1 5.6149 -1.0230 -0.5129 36 1 6.1524 -3.6011 0.9761 37 1 7.1904 -2.1551 0.9775 38 1 8.2742 -4.0302 2.5813 39 1 9.7975 -2.6309 4.6403 40 1 8.3154 -1.7577 5.0974 41 1 9.7909 -2.0934 7.0613 42 1 8.2596 -2.9797 7.2539 43 1 10.8938 -4.1707 6.2748 44 1 10.1923 -4.3942 7.8956 45 1 10.3823 -6.9910 5.7242 46 1 11.7261 -9.8138 6.8877 47 1 8.1967 -5.9871 4.4624 48 1 9.7282 -5.1008 4.2695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731696532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:29 Heat of formation + Delta-G solvation = -84.199965 kcal Electronic energy + Delta-G solvation = -28125.411760 eV Core-core repulsion = 23987.995363 eV Total energy + Delta-G solvation = -4137.416397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.40388 -41.14092 -39.55520 -38.54575 -36.22096 -35.85089 -34.84192 -33.72451 -32.94500 -31.36467 -30.31523 -29.48993 -27.98630 -26.09790 -25.69331 -23.39427 -23.34320 -22.80711 -22.18091 -21.47610 -20.83033 -19.23701 -18.64242 -18.33809 -17.75941 -17.57871 -17.28111 -16.92421 -16.34486 -16.07356 -15.88516 -15.62245 -15.35259 -15.24677 -15.01295 -14.86970 -14.65767 -14.23500 -14.12329 -13.88804 -13.62975 -13.41329 -13.30788 -13.16914 -13.00697 -12.90842 -12.83393 -12.45957 -12.25526 -12.13053 -12.02256 -11.97282 -11.65711 -11.65231 -11.47656 -11.37959 -10.90150 -10.87856 -10.78651 -10.06609 -9.76809 -8.99042 -7.93921 -5.21278 0.23108 1.34986 1.47345 1.47904 1.57526 1.59276 1.63274 1.95101 2.56433 2.82222 3.30785 3.39725 3.63299 3.72835 3.78129 3.86856 4.00339 4.04794 4.08784 4.19223 4.24780 4.27533 4.31061 4.33426 4.45336 4.47531 4.53950 4.58531 4.61865 4.67096 4.67765 4.77418 4.98365 5.02791 5.12391 5.14189 5.17347 5.22421 5.25513 5.35782 5.47058 5.50970 5.54301 5.65850 5.84279 6.29308 6.58836 6.61986 7.26602 7.35816 8.11412 8.35588 9.29486 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.001647 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.287465 B =16995.014549 C =17288.866656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.067 4.067 4 N -0.490 5.490 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.398 6.398 8 C 0.049 3.951 9 C 0.507 3.493 10 O -0.578 6.578 11 N -0.707 5.707 12 C 0.159 3.841 13 H 0.063 0.937 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.126 4.126 17 C 0.175 3.825 18 H 0.033 0.967 19 N -0.734 5.734 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.967 3.033 25 H -0.270 1.270 26 H -0.294 1.294 27 H -0.293 1.293 28 C -0.113 4.113 29 O -0.210 6.210 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.210 0.790 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.419 0.581 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.040 0.960 45 H 0.375 0.625 46 H 0.250 0.750 47 H 0.063 0.937 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.926 18.922 -20.645 32.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.206 4.206 4 N -0.221 5.221 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.317 6.317 8 C -0.030 4.030 9 C 0.294 3.706 10 O -0.457 6.457 11 N -0.360 5.360 12 C 0.054 3.946 13 H 0.081 0.919 14 C -0.155 4.155 15 C -0.146 4.146 16 C -0.166 4.166 17 C 0.066 3.934 18 H 0.051 0.949 19 N -0.374 5.374 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.797 3.203 25 H -0.194 1.194 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.152 4.152 29 O -0.097 6.097 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.227 0.773 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.257 0.743 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.082 0.918 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.044 19.588 -19.701 32.082 hybrid contribution 0.135 -1.459 0.540 1.562 sum -15.910 18.129 -19.161 30.804 Atomic orbital electron populations 1.20558 0.80711 1.05377 1.05872 1.24429 0.96857 0.83828 1.04192 1.23606 0.87069 1.02057 1.07839 1.70385 1.24841 1.09904 1.16989 1.26192 0.84749 0.90285 1.02877 1.20808 0.88688 0.97729 0.84417 1.88009 1.46873 1.70672 1.26123 1.22443 0.90052 0.97988 0.92503 1.20930 0.79968 0.77919 0.91760 1.90733 1.50867 1.50473 1.53645 1.45810 1.30011 1.51633 1.08565 1.20721 0.97829 0.94462 0.81576 0.91898 1.21812 1.00013 0.97351 0.96322 1.21419 1.00015 0.97171 0.96036 1.22088 0.99176 0.94926 1.00389 1.20327 0.93301 0.85538 0.94195 0.94885 1.42552 1.57855 1.23611 1.13384 1.19617 1.23134 1.02217 0.91959 0.91114 1.25460 1.00777 0.99545 1.00757 1.69799 1.36902 1.22916 1.32164 0.85162 0.76970 0.78296 0.79894 1.19433 1.22091 1.22059 1.21871 1.00556 0.95820 0.96920 1.84406 1.18143 1.37649 1.69527 0.89902 0.87588 0.86746 0.77346 0.86851 0.86151 0.85989 0.85810 0.74325 0.90236 0.92446 0.90648 0.92746 0.92497 0.94144 0.79314 0.94075 0.91826 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.24 0.74 0.28 16 2 C -0.04 -0.66 7.39 24.79 0.18 -0.48 16 3 C -0.07 -1.23 11.80 83.39 0.98 -0.25 16 4 N -0.49 -11.70 11.29 -303.83 -3.43 -15.14 16 5 C 0.17 3.59 7.97 88.34 0.70 4.29 16 6 C 0.16 2.29 6.56 71.24 0.47 2.76 16 7 O -0.40 -8.62 9.86 -129.94 -1.28 -9.90 16 8 C 0.05 0.67 6.42 71.23 0.46 1.13 16 9 C 0.51 12.04 7.87 87.66 0.69 12.73 16 10 O -0.58 -20.67 16.16 16.00 0.26 -20.41 16 11 N -0.71 -14.10 5.08 -442.55 -2.25 -16.35 16 12 C 0.16 4.22 2.45 44.99 0.11 4.33 16 13 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 14 C -0.12 -2.95 5.49 30.60 0.17 -2.78 16 15 C -0.11 -3.00 5.92 30.60 0.18 -2.82 16 16 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 17 C 0.18 6.74 2.77 45.01 0.12 6.87 16 18 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 19 N -0.73 -36.11 5.12 -322.88 -1.65 -37.76 16 20 C -0.24 -13.12 9.93 84.03 0.83 -12.29 16 21 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 23 N -0.97 -58.28 13.06 21.65 0.28 -57.99 16 24 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 28 C -0.11 -3.35 4.86 30.61 0.15 -3.20 16 29 O -0.21 -4.53 10.78 -3.79 -0.04 -4.57 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.42 5.19 8.60 -92.70 -0.80 4.39 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.37 19.45 7.80 -92.70 -0.72 18.73 16 46 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 47 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.08 2.17 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -83.78 401.49 -0.20 -83.98 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.55 Total: 27.18 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 6.43 Total: 2.71 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -7.05 Total: -127.24 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.06 Total: -34.88 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -83.78 -0.20 -83.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731696532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.220 kcal (2) G-P(sol) polarization free energy of solvation -83.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds