Wall clock time and date at job start Tue Mar 31 2020 19:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34327 * 126.44653 * 2 1 4 4 N 1.34472 * 107.67005 * 180.02562 * 3 2 1 5 5 C 1.30258 * 108.70247 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.61823 * 180.02562 * 5 4 3 7 7 O 1.42894 * 109.47064 * 89.97516 * 6 5 4 8 8 C 1.42907 * 113.99553 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46750 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00416 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99902 * 180.02562 * 9 8 7 12 12 C 1.48123 * 127.03012 * 359.68201 * 11 9 8 13 13 C 1.54602 * 103.42058 * 219.28426 * 12 11 9 14 14 C 1.54611 * 102.91400 * 322.87251 * 13 12 11 15 15 C 1.53003 * 110.32687 * 262.80419 * 14 13 12 16 16 C 1.52999 * 110.32954 * 140.58824 * 14 13 12 17 17 N 1.46498 * 109.47270 * 182.92271 * 16 14 13 18 18 C 1.36939 * 119.99989 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99880 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99552 * 180.02562 * 18 17 16 21 21 N 1.31608 * 120.00604 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99437 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46853 * 119.99926 * 22 20 18 25 25 H 1.48498 * 109.47143 * 239.99605 * 22 20 18 26 26 C 1.47476 * 127.03557 * 179.97438 * 11 9 8 27 27 O 1.33964 * 108.75916 * 359.97438 * 5 4 3 28 28 H 1.08999 * 109.47244 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46805 * 299.97952 * 1 2 3 30 30 H 1.09003 * 109.46963 * 59.98210 * 1 2 3 31 31 H 1.08005 * 126.15994 * 0.05987 * 3 2 1 32 32 H 1.09000 * 109.46507 * 209.97522 * 6 5 4 33 33 H 1.09003 * 109.46764 * 329.97487 * 6 5 4 34 34 H 1.08999 * 109.47104 * 299.99452 * 8 7 6 35 35 H 1.09004 * 109.47128 * 60.00039 * 8 7 6 36 36 H 1.08992 * 110.66153 * 337.77036 * 12 11 9 37 37 H 1.09004 * 110.66055 * 100.88937 * 12 11 9 38 38 H 1.08998 * 110.83277 * 204.44356 * 13 12 11 39 39 H 1.09004 * 110.72673 * 81.24283 * 13 12 11 40 40 H 1.09002 * 109.47207 * 177.07265 * 15 14 13 41 41 H 1.08997 * 109.46921 * 297.07873 * 15 14 13 42 42 H 1.09006 * 109.46917 * 57.07820 * 15 14 13 43 43 H 1.08997 * 109.47154 * 302.92239 * 16 14 13 44 44 H 1.08999 * 109.46936 * 62.92668 * 16 14 13 45 45 H 0.97006 * 120.00102 * 0.02562 * 17 16 14 46 46 H 0.97004 * 120.00356 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.91845 * 273.87772 * 26 11 9 48 48 H 1.08998 * 109.91329 * 35.15897 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6549 -0.0015 6 6 4.8004 -1.5341 -0.0018 7 8 5.1873 -1.8125 1.3453 8 6 6.3440 -2.6441 1.4578 9 6 6.6600 -2.8708 2.9137 10 8 5.9637 -2.3692 3.7707 11 7 7.7171 -3.6301 3.2636 12 6 8.6621 -4.3173 2.3532 13 6 8.9178 -5.6704 3.0561 14 6 8.9346 -5.2843 4.5531 15 6 10.3737 -5.0966 5.0375 16 6 8.2277 -6.3553 5.3862 17 7 8.1930 -5.9381 6.7901 18 6 7.6051 -6.7428 7.7292 19 1 7.1666 -7.6848 7.4349 20 6 7.5718 -6.3471 9.0593 21 7 8.1057 -5.1989 9.4180 22 14 6.7705 -7.4453 10.3406 23 1 6.2507 -8.6724 9.6855 24 1 7.7745 -7.8208 11.3684 25 1 5.6499 -6.7158 10.9866 26 6 8.1661 -3.9517 4.6310 27 8 2.3075 -1.0841 -0.0009 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5141 -0.8899 31 1 1.9821 2.1112 0.0009 32 1 4.5762 -2.4687 -0.5160 33 1 5.6147 -1.0230 -0.5155 34 1 6.1513 -3.6018 0.9741 35 1 7.1905 -2.1565 0.9742 36 1 8.2087 -4.4729 1.3743 37 1 9.5896 -3.7517 2.2632 38 1 9.8781 -6.0885 2.7544 39 1 8.1102 -6.3721 2.8475 40 1 10.3675 -4.7746 6.0788 41 1 10.9118 -6.0407 4.9522 42 1 10.8671 -4.3407 4.4264 43 1 7.2091 -6.4863 5.0209 44 1 8.7685 -7.2978 5.3006 45 1 8.5859 -5.0914 7.0543 46 1 8.0828 -4.9226 10.3476 47 1 8.8236 -3.1648 5.0006 48 1 7.3040 -4.0583 5.2894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733428951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:37 Heat of formation + Delta-G solvation = -33.724132 kcal Electronic energy + Delta-G solvation = -28698.389933 eV Core-core repulsion = 24563.162332 eV Total energy + Delta-G solvation = -4135.227601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.63768 -40.19183 -38.63799 -37.39978 -35.03960 -34.79291 -33.11311 -32.76100 -30.56671 -30.07235 -29.14128 -28.13702 -26.15187 -25.60566 -24.90048 -23.58921 -22.63760 -21.96794 -21.42607 -19.53628 -18.77372 -17.91148 -17.41716 -17.17692 -16.77886 -16.66251 -16.20676 -15.71070 -15.46456 -14.90841 -14.71608 -14.45326 -14.12869 -13.93550 -13.66703 -13.51995 -13.47868 -13.27798 -13.05136 -12.76286 -12.58114 -12.50714 -12.25950 -12.16954 -12.02988 -11.77957 -11.61295 -11.45771 -10.97891 -10.84702 -10.82379 -10.57167 -10.45715 -10.26155 -10.21180 -9.92259 -9.70735 -9.60497 -9.05591 -8.85274 -8.57603 -6.88694 -5.72955 -3.01511 0.98264 2.06932 2.34828 2.66474 2.76609 3.46518 3.49424 3.51872 3.54326 3.95978 4.34115 4.39554 4.57872 4.59394 4.62220 4.65858 4.71261 4.78967 4.83591 4.91016 4.97381 5.00031 5.04513 5.17447 5.29661 5.33835 5.45073 5.50683 5.61971 5.69794 5.71183 5.86469 5.94993 5.98973 5.99866 6.11815 6.16314 6.31054 6.37191 6.51254 6.57366 6.65704 6.77853 6.85366 7.39662 7.59641 7.73976 8.24620 8.45711 9.57178 10.14019 10.48477 11.49954 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002166 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.016728 B =12921.583342 C =14503.490629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.038 4.038 3 C -0.046 4.046 4 N -0.458 5.458 5 C 0.187 3.813 6 C 0.162 3.838 7 O -0.356 6.356 8 C 0.052 3.948 9 C 0.528 3.472 10 O -0.512 6.512 11 N -0.619 5.619 12 C 0.098 3.902 13 C -0.124 4.124 14 C -0.079 4.079 15 C -0.132 4.132 16 C 0.167 3.833 17 N -0.730 5.730 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.117 3.883 27 O -0.193 6.193 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.186 0.814 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.019 0.981 44 H 0.023 0.977 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 7.420 -27.163 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.185 4.185 4 N -0.188 5.188 5 C -0.020 4.020 6 C 0.084 3.916 7 O -0.273 6.273 8 C -0.027 4.027 9 C 0.315 3.685 10 O -0.386 6.386 11 N -0.356 5.356 12 C -0.025 4.025 13 C -0.163 4.163 14 C -0.081 4.081 15 C -0.189 4.189 16 C 0.039 3.961 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.005 4.005 27 O -0.080 6.080 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.203 0.797 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.078 7.996 -26.468 28.112 hybrid contribution -0.761 -0.731 0.695 1.264 sum -5.839 7.265 -25.773 27.406 Atomic orbital electron populations 1.20325 0.83711 1.04610 1.04054 1.23594 0.95222 0.84503 1.05835 1.23109 0.87575 1.00569 1.07230 1.70408 1.23336 1.09032 1.16064 1.25489 0.83892 0.89938 1.02642 1.20467 0.89088 0.96423 0.85603 1.88096 1.45657 1.69719 1.23864 1.22221 0.89249 0.95740 0.95512 1.19633 0.79807 0.78950 0.90105 1.90796 1.48145 1.48040 1.51646 1.48747 1.27683 1.49893 1.09261 1.22536 0.93098 0.93425 0.93467 1.22743 1.02748 0.96152 0.94665 1.21686 0.96426 0.95272 0.94667 1.21805 0.93748 1.01201 1.02187 1.20699 0.96105 0.93629 0.85638 1.42397 1.70071 1.23818 1.01246 1.19244 1.29371 1.00423 0.87980 0.91206 1.24732 1.01593 0.97377 0.97235 1.69656 1.50248 1.21467 1.16673 0.86129 0.78648 0.79612 0.81863 1.20617 1.21917 1.21876 1.22273 0.99959 0.95593 0.82641 1.84398 1.17701 1.36624 1.69266 0.90182 0.88981 0.89177 0.79670 0.89876 0.88409 0.89778 0.89735 0.90575 0.90707 0.89862 0.90553 0.91120 0.92380 0.93415 0.96330 0.95962 0.78090 0.93548 0.91516 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.43 36.01 0.38 0.01 16 2 C -0.04 -0.37 7.39 -35.69 -0.26 -0.63 16 3 C -0.05 -0.47 11.80 -17.77 -0.21 -0.68 16 4 N -0.46 -5.97 11.29 -11.10 -0.13 -6.09 16 5 C 0.19 2.28 7.97 -12.94 -0.10 2.17 16 6 C 0.16 1.49 6.56 36.01 0.24 1.73 16 7 O -0.36 -4.75 9.86 -55.14 -0.54 -5.29 16 8 C 0.05 0.55 5.35 36.01 0.19 0.74 16 9 C 0.53 8.34 7.97 -10.98 -0.09 8.25 16 10 O -0.51 -11.06 16.84 -14.35 -0.24 -11.30 16 11 N -0.62 -8.76 3.29 -169.97 -0.56 -9.32 16 12 C 0.10 0.92 6.93 -2.31 -0.02 0.90 16 13 C -0.12 -1.35 6.15 -25.04 -0.15 -1.50 16 14 C -0.08 -1.21 0.67 -153.12 -0.10 -1.31 16 15 C -0.13 -1.90 8.04 37.16 0.30 -1.60 16 16 C 0.17 3.30 4.90 -4.04 -0.02 3.28 16 17 N -0.73 -18.38 4.88 -59.91 -0.29 -18.68 16 18 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.39 5.50 -17.44 -0.10 -0.49 16 21 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 22 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 C 0.12 1.99 5.78 -2.97 -0.02 1.97 16 27 O -0.19 -2.33 10.78 5.36 0.06 -2.27 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.19 1.31 8.06 -52.48 -0.42 0.88 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.48 7.23 -51.93 -0.38 0.11 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 39 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 40 H 0.07 1.23 7.00 -51.93 -0.36 0.86 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.38 10.13 6.27 -40.82 -0.26 9.88 16 46 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.07 1.13 7.68 -51.93 -0.40 0.73 16 48 H 0.09 2.00 7.32 -51.93 -0.38 1.62 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -39.06 399.19 -7.73 -46.78 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.62 Total: 4.25 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.12 Total: 5.93 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.25 Total: -62.00 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.73 Total: -18.86 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.06 -7.73 -46.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733428951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.057 kcal (2) G-P(sol) polarization free energy of solvation -39.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds