Wall clock time and date at job start Tue Mar 31 2020 19:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34327 * 126.44653 * 2 1 4 4 N 1.34472 * 107.67005 * 180.02562 * 3 2 1 5 5 C 1.30258 * 108.70247 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.61823 * 180.02562 * 5 4 3 7 7 O 1.42894 * 109.47064 * 89.97516 * 6 5 4 8 8 C 1.42907 * 113.99553 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46750 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00416 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99902 * 180.02562 * 9 8 7 12 12 C 1.48123 * 127.03012 * 359.68201 * 11 9 8 13 13 C 1.54602 * 103.42058 * 219.28426 * 12 11 9 14 14 C 1.54611 * 102.91400 * 322.87251 * 13 12 11 15 15 C 1.53003 * 110.32687 * 262.80419 * 14 13 12 16 16 C 1.52999 * 110.32954 * 140.58824 * 14 13 12 17 17 N 1.46498 * 109.47270 * 182.92271 * 16 14 13 18 18 C 1.36939 * 119.99989 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99880 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99552 * 180.02562 * 18 17 16 21 21 N 1.31608 * 120.00604 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99437 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46853 * 119.99926 * 22 20 18 25 25 H 1.48498 * 109.47143 * 239.99605 * 22 20 18 26 26 C 1.47476 * 127.03557 * 179.97438 * 11 9 8 27 27 O 1.33964 * 108.75916 * 359.97438 * 5 4 3 28 28 H 1.08999 * 109.47244 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46805 * 299.97952 * 1 2 3 30 30 H 1.09003 * 109.46963 * 59.98210 * 1 2 3 31 31 H 1.08005 * 126.15994 * 0.05987 * 3 2 1 32 32 H 1.09000 * 109.46507 * 209.97522 * 6 5 4 33 33 H 1.09003 * 109.46764 * 329.97487 * 6 5 4 34 34 H 1.08999 * 109.47104 * 299.99452 * 8 7 6 35 35 H 1.09004 * 109.47128 * 60.00039 * 8 7 6 36 36 H 1.08992 * 110.66153 * 337.77036 * 12 11 9 37 37 H 1.09004 * 110.66055 * 100.88937 * 12 11 9 38 38 H 1.08998 * 110.83277 * 204.44356 * 13 12 11 39 39 H 1.09004 * 110.72673 * 81.24283 * 13 12 11 40 40 H 1.09002 * 109.47207 * 177.07265 * 15 14 13 41 41 H 1.08997 * 109.46921 * 297.07873 * 15 14 13 42 42 H 1.09006 * 109.46917 * 57.07820 * 15 14 13 43 43 H 1.08997 * 109.47154 * 302.92239 * 16 14 13 44 44 H 1.08999 * 109.46936 * 62.92668 * 16 14 13 45 45 H 0.97006 * 120.00102 * 0.02562 * 17 16 14 46 46 H 0.97004 * 120.00356 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.91845 * 273.87772 * 26 11 9 48 48 H 1.08998 * 109.91329 * 35.15897 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6549 -0.0015 6 6 4.8004 -1.5341 -0.0018 7 8 5.1873 -1.8125 1.3453 8 6 6.3440 -2.6441 1.4578 9 6 6.6600 -2.8708 2.9137 10 8 5.9637 -2.3692 3.7707 11 7 7.7171 -3.6301 3.2636 12 6 8.6621 -4.3173 2.3532 13 6 8.9178 -5.6704 3.0561 14 6 8.9346 -5.2843 4.5531 15 6 10.3737 -5.0966 5.0375 16 6 8.2277 -6.3553 5.3862 17 7 8.1930 -5.9381 6.7901 18 6 7.6051 -6.7428 7.7292 19 1 7.1666 -7.6848 7.4349 20 6 7.5718 -6.3471 9.0593 21 7 8.1057 -5.1989 9.4180 22 14 6.7705 -7.4453 10.3406 23 1 6.2507 -8.6724 9.6855 24 1 7.7745 -7.8208 11.3684 25 1 5.6499 -6.7158 10.9866 26 6 8.1661 -3.9517 4.6310 27 8 2.3075 -1.0841 -0.0009 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5141 -0.8899 31 1 1.9821 2.1112 0.0009 32 1 4.5762 -2.4687 -0.5160 33 1 5.6147 -1.0230 -0.5155 34 1 6.1513 -3.6018 0.9741 35 1 7.1905 -2.1565 0.9742 36 1 8.2087 -4.4729 1.3743 37 1 9.5896 -3.7517 2.2632 38 1 9.8781 -6.0885 2.7544 39 1 8.1102 -6.3721 2.8475 40 1 10.3675 -4.7746 6.0788 41 1 10.9118 -6.0407 4.9522 42 1 10.8671 -4.3407 4.4264 43 1 7.2091 -6.4863 5.0209 44 1 8.7685 -7.2978 5.3006 45 1 8.5859 -5.0914 7.0543 46 1 8.0828 -4.9226 10.3476 47 1 8.8236 -3.1648 5.0006 48 1 7.3040 -4.0583 5.2894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733428951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:36 Heat of formation + Delta-G solvation = -64.534505 kcal Electronic energy + Delta-G solvation = -28699.725971 eV Core-core repulsion = 24563.162332 eV Total energy + Delta-G solvation = -4136.563639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41719 -41.33527 -39.67635 -38.50170 -36.48676 -35.86551 -34.43877 -33.73203 -32.34401 -30.82170 -30.28195 -29.05103 -27.64203 -26.62588 -25.96454 -25.10572 -23.41595 -23.38371 -22.19615 -20.61338 -20.11367 -19.24276 -18.66803 -18.16638 -17.76507 -17.59174 -17.13935 -16.71844 -16.63001 -16.48523 -15.69331 -15.63275 -15.33892 -15.19191 -15.12919 -14.76825 -14.36486 -14.25323 -13.90606 -13.79365 -13.60819 -13.35792 -13.32155 -13.11076 -13.08549 -12.99484 -12.90521 -12.73548 -12.65780 -12.47113 -12.12619 -12.02220 -11.79358 -11.67160 -11.42061 -11.36363 -10.99587 -10.92704 -10.90913 -9.78258 -9.76306 -9.00584 -7.97334 -5.25446 0.21186 1.30986 1.43089 1.45212 1.52299 1.54735 1.62313 1.80138 2.53458 2.76281 3.19836 3.35888 3.44884 3.66437 3.72641 3.76437 3.81392 3.98848 4.06154 4.14109 4.18673 4.20317 4.26556 4.35179 4.39797 4.45962 4.47848 4.60331 4.65686 4.69912 4.79633 4.81212 4.90785 4.96869 4.97316 5.07782 5.09711 5.12812 5.20407 5.24128 5.31490 5.37551 5.46592 5.57557 5.84384 6.25250 6.53036 6.60573 7.10331 7.31427 8.08842 8.30770 9.26577 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002166 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.016728 B =12921.583342 C =14503.490629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.068 4.068 4 N -0.490 5.490 5 C 0.164 3.836 6 C 0.160 3.840 7 O -0.403 6.403 8 C 0.062 3.938 9 C 0.514 3.486 10 O -0.592 6.592 11 N -0.617 5.617 12 C 0.097 3.903 13 C -0.115 4.115 14 C -0.072 4.072 15 C -0.125 4.125 16 C 0.164 3.836 17 N -0.743 5.743 18 C -0.243 4.243 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.289 1.289 25 H -0.298 1.298 26 C 0.120 3.880 27 O -0.211 6.211 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.210 0.790 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.005 0.995 44 H 0.033 0.967 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.058 0.942 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 6.165 -30.898 31.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.206 4.206 4 N -0.221 5.221 5 C -0.042 4.042 6 C 0.084 3.916 7 O -0.322 6.322 8 C -0.016 4.016 9 C 0.304 3.696 10 O -0.472 6.472 11 N -0.351 5.351 12 C -0.024 4.024 13 C -0.154 4.154 14 C -0.073 4.073 15 C -0.182 4.182 16 C 0.038 3.962 17 N -0.386 5.386 18 C -0.375 4.375 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.189 1.189 24 H -0.216 1.216 25 H -0.225 1.225 26 C -0.004 4.004 27 O -0.097 6.097 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.227 0.773 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.023 0.977 44 H 0.051 0.949 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.378 6.685 -30.289 31.325 hybrid contribution -1.010 -0.323 1.815 2.102 sum -5.389 6.362 -28.474 29.670 Atomic orbital electron populations 1.20558 0.80690 1.05378 1.05871 1.24441 0.96883 0.83834 1.04190 1.23612 0.87082 1.02072 1.07841 1.70379 1.24837 1.09909 1.16962 1.26219 0.84774 0.90312 1.02885 1.20846 0.88735 0.97886 0.84132 1.88026 1.46945 1.70635 1.26567 1.22364 0.90072 0.97991 0.91222 1.20873 0.78885 0.77660 0.92192 1.90754 1.50879 1.51276 1.54272 1.48876 1.28008 1.49398 1.08827 1.22959 0.93405 0.91915 0.94090 1.22784 1.04784 0.97308 0.90490 1.21594 0.95784 0.92531 0.97409 1.21744 0.93460 1.02747 1.00289 1.20889 0.96068 0.95704 0.83562 1.42620 1.69597 1.23134 1.03241 1.19672 1.28371 1.00631 0.88849 0.90731 1.25588 1.03066 0.98972 0.99462 1.69823 1.52212 1.23399 1.16669 0.85071 0.77336 0.78233 0.79123 1.18906 1.21613 1.22511 1.21988 0.97603 0.96774 0.84017 1.84402 1.18165 1.37670 1.69513 0.89909 0.87735 0.86570 0.77303 0.86533 0.85838 0.85623 0.85434 0.85898 0.88083 0.86393 0.90526 0.95174 0.91130 0.90092 0.97725 0.94914 0.79297 0.94078 0.92336 0.94881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.43 71.24 0.74 0.14 16 2 C -0.04 -0.76 7.39 24.79 0.18 -0.58 16 3 C -0.07 -1.39 11.80 83.39 0.98 -0.41 16 4 N -0.49 -12.81 11.29 -303.83 -3.43 -16.24 16 5 C 0.16 3.95 7.97 88.34 0.70 4.65 16 6 C 0.16 2.62 6.56 71.24 0.47 3.09 16 7 O -0.40 -10.29 9.86 -129.94 -1.28 -11.57 16 8 C 0.06 1.10 5.35 71.24 0.38 1.48 16 9 C 0.51 16.10 7.97 87.66 0.70 16.80 16 10 O -0.59 -27.27 16.84 16.03 0.27 -27.00 16 11 N -0.62 -16.68 3.29 -810.04 -2.67 -19.35 16 12 C 0.10 1.34 6.93 86.61 0.60 1.94 16 13 C -0.12 -2.03 6.15 31.69 0.20 -1.83 16 14 C -0.07 -2.13 0.67 -51.28 -0.03 -2.16 16 15 C -0.13 -3.44 8.04 71.98 0.58 -2.86 16 16 C 0.16 6.58 4.90 86.38 0.42 7.00 16 17 N -0.74 -39.02 4.88 -343.47 -1.68 -40.70 16 18 C -0.24 -14.16 9.99 84.03 0.84 -13.32 16 19 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 21 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 22 Si 0.97 48.21 29.55 68.60 2.03 50.24 16 23 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 25 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 26 C 0.12 4.23 5.78 86.54 0.50 4.73 16 27 O -0.21 -5.04 10.78 -3.73 -0.04 -5.08 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.21 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.13 1.17 7.90 -2.39 -0.02 1.16 16 35 H 0.13 1.16 8.14 -2.38 -0.02 1.15 16 36 H 0.12 0.66 7.23 -2.39 -0.02 0.65 16 37 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.12 1.36 7.85 -2.39 -0.02 1.34 16 39 H 0.08 1.39 7.86 -2.38 -0.02 1.37 16 40 H 0.03 1.06 7.00 -2.39 -0.02 1.05 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.00 0.21 8.13 -2.39 -0.02 0.19 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.37 21.00 6.27 -92.70 -0.58 20.42 16 46 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 47 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 48 H 0.03 1.55 7.32 -2.39 -0.02 1.53 16 Total: -1.00 -95.62 399.19 1.60 -94.02 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.38 Total: 23.11 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 7.73 Total: 14.40 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -7.49 Total: -138.13 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -1.05 Total: -43.65 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -95.62 1.60 -94.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733428951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.486 kcal (2) G-P(sol) polarization free energy of solvation -95.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds