Wall clock time and date at job start Tue Mar 31 2020 21:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 C 1.50703 * 110.54179 * 52.79986 * 3 2 1 5 5 O 1.21280 * 119.99858 * 245.88684 * 4 3 2 6 6 N 1.34774 * 120.00107 * 65.87529 * 4 3 2 7 7 C 1.46497 * 120.00428 * 174.77499 * 6 4 3 8 8 H 1.09000 * 110.45035 * 325.70733 * 7 6 4 9 9 C 1.54548 * 110.50988 * 88.30165 * 7 6 4 10 10 O 1.44993 * 104.85541 * 95.04974 * 9 7 6 11 11 C 1.43241 * 105.24296 * 39.05859 * 10 9 7 12 12 C 1.52888 * 115.84411 * 90.88790 * 11 10 9 13 13 N 1.47780 * 85.78173 * 94.51429 * 12 11 10 14 14 C 1.36939 * 134.40263 * 203.87687 * 13 12 11 15 15 H 1.08000 * 120.00255 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99966 * 359.97438 * 14 13 12 17 17 N 1.31622 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00236 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46807 * 60.00249 * 18 16 14 20 20 H 1.48502 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47265 * 300.00193 * 18 16 14 22 22 C 1.47783 * 91.19928 * 23.87012 * 13 12 11 23 23 C 1.53469 * 106.26238 * 321.02520 * 11 10 9 24 24 C 1.54781 * 110.61442 * 290.17219 * 3 2 1 25 25 C 1.54479 * 101.69332 * 266.39899 * 24 3 2 26 26 N 1.46768 * 105.47550 * 334.39166 * 25 24 3 27 27 C 1.34425 * 111.29717 * 17.01270 * 26 25 24 28 28 O 1.21281 * 124.93849 * 179.55356 * 27 26 25 29 29 H 1.09007 * 109.46585 * 64.82393 * 1 2 3 30 30 H 1.08995 * 109.47499 * 184.82222 * 1 2 3 31 31 H 1.09005 * 109.47352 * 304.83162 * 1 2 3 32 32 H 1.08993 * 109.47324 * 239.99768 * 2 1 3 33 33 H 1.09004 * 109.46975 * 120.00023 * 2 1 3 34 34 H 0.97003 * 119.99834 * 354.77861 * 6 4 3 35 35 H 1.08993 * 110.33400 * 213.91097 * 9 7 6 36 36 H 1.09012 * 110.32569 * 336.13364 * 9 7 6 37 37 H 1.09002 * 113.82408 * 208.72436 * 12 11 10 38 38 H 1.09001 * 113.82449 * 340.29439 * 12 11 10 39 39 H 0.96996 * 120.00448 * 180.02562 * 17 16 14 40 40 H 1.08999 * 113.82949 * 221.90849 * 22 13 12 41 41 H 1.09004 * 113.81635 * 90.34480 * 22 13 12 42 42 H 1.08999 * 110.57369 * 264.15655 * 23 11 10 43 43 H 1.08996 * 110.70569 * 141.32935 * 23 11 10 44 44 H 1.09003 * 111.16839 * 148.23349 * 24 3 2 45 45 H 1.09000 * 110.87285 * 24.43412 * 24 3 2 46 46 H 1.09001 * 110.24606 * 215.39081 * 25 24 3 47 47 H 1.09005 * 110.32195 * 93.43196 * 25 24 3 48 48 H 0.96992 * 124.35322 * 196.99715 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4119 2.2254 1.1241 5 8 0.6590 3.1435 0.8768 6 7 1.6867 1.9053 2.4041 7 6 1.1687 2.7356 3.4943 8 1 1.1384 3.7830 3.1939 9 6 -0.2363 2.2538 3.9213 10 8 0.0003 1.3642 5.0416 11 6 1.0534 1.9780 5.7940 12 6 0.6109 2.9353 6.9010 13 7 0.7230 1.7701 7.8031 14 6 0.1627 1.4324 9.0061 15 1 0.4155 0.4928 9.4748 16 6 -0.7303 2.2977 9.6232 17 7 -1.0388 3.4425 9.0518 18 14 -1.4942 1.8373 11.2645 19 1 -0.4216 1.6488 12.2741 20 1 -2.4056 2.9226 11.7081 21 1 -2.2621 0.5749 11.1165 22 6 1.6812 1.1149 6.8885 23 6 2.0325 2.5611 4.7662 24 6 1.7507 2.1228 -1.3598 25 6 3.0688 1.8679 -2.1241 26 7 4.0979 1.7130 -1.0892 27 6 3.5483 1.4708 0.1134 28 8 4.1713 1.2952 1.1391 29 1 -0.3633 0.4372 -0.9301 30 1 -0.3634 -1.0240 0.0864 31 1 -0.3634 0.5870 0.8436 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.2274 1.1251 2.6035 35 1 -0.8489 3.1003 4.2314 36 1 -0.7172 1.7167 3.1036 37 1 1.3303 3.7265 7.1124 38 1 -0.4079 3.3043 6.7829 39 1 -1.6625 4.0474 9.4831 40 1 1.5076 0.0465 6.7605 41 1 2.7236 1.3567 7.0962 42 1 2.8517 1.8664 4.5805 43 1 2.4169 3.5238 5.1031 44 1 1.5722 3.1909 -1.2355 45 1 0.9098 1.6446 -1.8622 46 1 3.3034 2.7177 -2.7652 47 1 2.9917 0.9576 -2.7187 48 1 5.0519 1.7769 -1.2521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733795259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:08 Heat of formation + Delta-G solvation = -51.461829 kcal Electronic energy + Delta-G solvation = -30699.301077 eV Core-core repulsion = 26563.304312 eV Total energy + Delta-G solvation = -4135.996765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64439 -39.98599 -38.79929 -36.94832 -36.03189 -34.66792 -34.10125 -32.02525 -30.43621 -30.19204 -28.38775 -27.66933 -25.81682 -24.83771 -23.75963 -23.21428 -21.83408 -21.76884 -20.74312 -19.65442 -18.90633 -17.92099 -16.97184 -16.83879 -16.65154 -16.25007 -15.55276 -15.30797 -15.09097 -14.96695 -14.63780 -14.31611 -14.20880 -13.91621 -13.85511 -13.46114 -13.40655 -13.19425 -12.89479 -12.66722 -12.43600 -12.25763 -12.10927 -11.78646 -11.54860 -11.43591 -11.38037 -11.21239 -11.16031 -11.03995 -10.78896 -10.51114 -10.33705 -10.20389 -9.83417 -9.71363 -9.58283 -9.46115 -9.18489 -8.76409 -8.64914 -6.81495 -5.68867 -3.00538 2.01618 2.44851 2.86386 3.11938 3.45367 3.48745 3.50308 3.73091 3.94361 4.27431 4.31627 4.45455 4.51787 4.54762 4.73725 4.80821 4.88616 4.96000 5.07623 5.12327 5.24746 5.26512 5.32502 5.40604 5.43023 5.54880 5.58929 5.61865 5.69327 5.70649 5.86848 5.96813 6.04781 6.10542 6.17474 6.27311 6.42004 6.49674 6.53417 6.55680 6.66419 7.02056 7.26353 7.45676 7.55191 7.73447 7.76866 8.05116 8.09719 9.11487 9.78004 10.65484 11.48510 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.002542 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.871681 B =11012.626003 C =11239.515667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.118 4.118 4 C 0.537 3.463 5 O -0.535 6.535 6 N -0.701 5.701 7 C 0.113 3.887 8 H 0.099 0.901 9 C 0.040 3.960 10 O -0.338 6.338 11 C 0.056 3.944 12 C 0.152 3.848 13 N -0.605 5.605 14 C -0.219 4.219 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.130 3.870 23 C -0.145 4.145 24 C -0.116 4.116 25 C 0.099 3.901 26 N -0.728 5.728 27 C 0.531 3.469 28 O -0.515 6.515 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.655 -3.962 -27.286 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 C -0.124 4.124 4 C 0.321 3.679 5 O -0.412 6.412 6 N -0.352 5.352 7 C 0.008 3.992 8 H 0.117 0.883 9 C -0.038 4.038 10 O -0.256 6.256 11 C 0.015 3.985 12 C 0.027 3.973 13 N -0.331 5.331 14 C -0.347 4.347 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.004 3.996 23 C -0.184 4.184 24 C -0.153 4.153 25 C -0.025 4.025 26 N -0.384 5.384 27 C 0.315 3.685 28 O -0.389 6.389 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.244 0.756 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.010 -3.545 -26.520 27.929 hybrid contribution 0.448 -0.259 0.794 0.948 sum 8.457 -3.804 -25.726 27.346 Atomic orbital electron populations 1.21850 0.93881 1.02696 1.02834 1.21404 0.97465 0.90996 1.03841 1.21795 0.94323 0.99272 0.97058 1.19624 0.81205 0.83663 0.83428 1.90711 1.36094 1.30553 1.83878 1.46088 1.53423 1.30827 1.04889 1.22460 0.94369 0.95765 0.86590 0.88258 1.23838 0.95434 0.94900 0.89625 1.89061 1.55165 1.43821 1.37524 1.23759 0.87108 0.96791 0.90833 1.22604 1.00744 0.89963 0.84026 1.45829 1.47675 1.17990 1.21617 1.18952 1.19234 1.02122 0.94374 0.90286 1.24765 1.00094 0.96581 0.99053 1.69801 1.37842 1.10201 1.39138 0.86192 0.78858 0.77262 0.83396 1.21250 1.21598 1.21104 1.22504 0.93438 0.96939 0.86724 1.23065 0.98797 1.02913 0.93652 1.22731 0.97303 1.03436 0.91878 1.22177 0.87340 1.02349 0.90668 1.46102 1.09857 1.73293 1.09151 1.20362 0.89237 0.75425 0.83478 1.90792 1.68015 1.49114 1.31001 0.91952 0.91566 0.92015 0.90274 0.90369 0.75556 0.91189 0.89567 0.94719 0.90401 0.93670 0.93001 0.93500 0.90020 0.89289 0.88160 0.88245 0.89742 0.90636 0.74742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.48 37.16 0.35 -0.86 16 2 C -0.10 -0.74 5.03 -26.73 -0.13 -0.88 16 3 C -0.12 -1.07 0.48 -155.59 -0.07 -1.14 16 4 C 0.54 6.76 4.91 -10.98 -0.05 6.70 16 5 O -0.54 -8.07 15.33 5.56 0.09 -7.98 16 6 N -0.70 -9.21 4.68 -52.13 -0.24 -9.46 16 7 C 0.11 1.67 3.41 -66.20 -0.23 1.45 16 8 H 0.10 1.48 7.69 -51.93 -0.40 1.08 16 9 C 0.04 0.67 7.39 37.97 0.28 0.95 16 10 O -0.34 -6.93 11.45 -35.23 -0.40 -7.34 16 11 C 0.06 1.12 1.28 -90.66 -0.12 1.01 16 12 C 0.15 3.71 6.99 -3.40 -0.02 3.68 16 13 N -0.60 -16.27 3.71 -183.61 -0.68 -16.95 16 14 C -0.22 -6.41 10.70 -15.06 -0.16 -6.58 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 17 N -0.92 -28.20 11.40 55.49 0.63 -27.56 16 18 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.13 2.80 8.47 -3.40 -0.03 2.77 16 23 C -0.15 -2.26 6.24 -25.57 -0.16 -2.42 16 24 C -0.12 -0.75 5.80 -25.02 -0.15 -0.90 16 25 C 0.10 0.41 7.78 -3.12 -0.02 0.38 16 26 N -0.73 -4.75 6.24 -59.19 -0.37 -5.12 16 27 C 0.53 5.36 7.16 -10.86 -0.08 5.28 16 28 O -0.51 -6.97 16.62 5.56 0.09 -6.88 16 29 H 0.06 0.41 6.84 -51.93 -0.36 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.64 6.89 -51.93 -0.36 0.28 16 32 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 33 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.41 5.19 7.39 -40.82 -0.30 4.89 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.34 8.06 -51.92 -0.42 0.92 16 37 H 0.04 0.84 7.96 -51.93 -0.41 0.42 16 38 H 0.08 2.12 7.20 -51.93 -0.37 1.75 16 39 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.17 7.67 -51.93 -0.40 0.77 16 43 H 0.09 1.32 7.84 -51.93 -0.41 0.91 16 44 H 0.10 0.82 7.16 -51.93 -0.37 0.45 16 45 H 0.10 0.48 6.55 -51.93 -0.34 0.14 16 46 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.41 2.05 8.96 -40.82 -0.37 1.69 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -36.33 382.41 -8.27 -44.59 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.43 Total: 3.99 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -0.69 Total: 9.11 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.66 Total: -59.09 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.23 Total: -22.20 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.33 -8.27 -44.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733795259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.871 kcal (2) G-P(sol) polarization free energy of solvation -36.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds