Wall clock time and date at job start Tue Mar 31 2020 21:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 C 1.50703 * 110.54179 * 52.79986 * 3 2 1 5 5 O 1.21280 * 119.99858 * 245.88684 * 4 3 2 6 6 N 1.34774 * 120.00107 * 65.87529 * 4 3 2 7 7 C 1.46497 * 120.00428 * 174.77499 * 6 4 3 8 8 H 1.09000 * 110.45035 * 325.70733 * 7 6 4 9 9 C 1.54548 * 110.50988 * 88.30165 * 7 6 4 10 10 O 1.44993 * 104.85541 * 95.04974 * 9 7 6 11 11 C 1.43241 * 105.24296 * 39.05859 * 10 9 7 12 12 C 1.52888 * 115.84411 * 90.88790 * 11 10 9 13 13 N 1.47780 * 85.78173 * 94.51429 * 12 11 10 14 14 C 1.36939 * 134.40263 * 203.87687 * 13 12 11 15 15 H 1.08000 * 120.00255 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99966 * 359.97438 * 14 13 12 17 17 N 1.31622 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00236 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46807 * 60.00249 * 18 16 14 20 20 H 1.48502 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47265 * 300.00193 * 18 16 14 22 22 C 1.47783 * 91.19928 * 23.87012 * 13 12 11 23 23 C 1.53469 * 106.26238 * 321.02520 * 11 10 9 24 24 C 1.54781 * 110.61442 * 290.17219 * 3 2 1 25 25 C 1.54479 * 101.69332 * 266.39899 * 24 3 2 26 26 N 1.46768 * 105.47550 * 334.39166 * 25 24 3 27 27 C 1.34425 * 111.29717 * 17.01270 * 26 25 24 28 28 O 1.21281 * 124.93849 * 179.55356 * 27 26 25 29 29 H 1.09007 * 109.46585 * 64.82393 * 1 2 3 30 30 H 1.08995 * 109.47499 * 184.82222 * 1 2 3 31 31 H 1.09005 * 109.47352 * 304.83162 * 1 2 3 32 32 H 1.08993 * 109.47324 * 239.99768 * 2 1 3 33 33 H 1.09004 * 109.46975 * 120.00023 * 2 1 3 34 34 H 0.97003 * 119.99834 * 354.77861 * 6 4 3 35 35 H 1.08993 * 110.33400 * 213.91097 * 9 7 6 36 36 H 1.09012 * 110.32569 * 336.13364 * 9 7 6 37 37 H 1.09002 * 113.82408 * 208.72436 * 12 11 10 38 38 H 1.09001 * 113.82449 * 340.29439 * 12 11 10 39 39 H 0.96996 * 120.00448 * 180.02562 * 17 16 14 40 40 H 1.08999 * 113.82949 * 221.90849 * 22 13 12 41 41 H 1.09004 * 113.81635 * 90.34480 * 22 13 12 42 42 H 1.08999 * 110.57369 * 264.15655 * 23 11 10 43 43 H 1.08996 * 110.70569 * 141.32935 * 23 11 10 44 44 H 1.09003 * 111.16839 * 148.23349 * 24 3 2 45 45 H 1.09000 * 110.87285 * 24.43412 * 24 3 2 46 46 H 1.09001 * 110.24606 * 215.39081 * 25 24 3 47 47 H 1.09005 * 110.32195 * 93.43196 * 25 24 3 48 48 H 0.96992 * 124.35322 * 196.99715 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4119 2.2254 1.1241 5 8 0.6590 3.1435 0.8768 6 7 1.6867 1.9053 2.4041 7 6 1.1687 2.7356 3.4943 8 1 1.1384 3.7830 3.1939 9 6 -0.2363 2.2538 3.9213 10 8 0.0003 1.3642 5.0416 11 6 1.0534 1.9780 5.7940 12 6 0.6109 2.9353 6.9010 13 7 0.7230 1.7701 7.8031 14 6 0.1627 1.4324 9.0061 15 1 0.4155 0.4928 9.4748 16 6 -0.7303 2.2977 9.6232 17 7 -1.0388 3.4425 9.0518 18 14 -1.4942 1.8373 11.2645 19 1 -0.4216 1.6488 12.2741 20 1 -2.4056 2.9226 11.7081 21 1 -2.2621 0.5749 11.1165 22 6 1.6812 1.1149 6.8885 23 6 2.0325 2.5611 4.7662 24 6 1.7507 2.1228 -1.3598 25 6 3.0688 1.8679 -2.1241 26 7 4.0979 1.7130 -1.0892 27 6 3.5483 1.4708 0.1134 28 8 4.1713 1.2952 1.1391 29 1 -0.3633 0.4372 -0.9301 30 1 -0.3634 -1.0240 0.0864 31 1 -0.3634 0.5870 0.8436 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.2274 1.1251 2.6035 35 1 -0.8489 3.1003 4.2314 36 1 -0.7172 1.7167 3.1036 37 1 1.3303 3.7265 7.1124 38 1 -0.4079 3.3043 6.7829 39 1 -1.6625 4.0474 9.4831 40 1 1.5076 0.0465 6.7605 41 1 2.7236 1.3567 7.0962 42 1 2.8517 1.8664 4.5805 43 1 2.4169 3.5238 5.1031 44 1 1.5722 3.1909 -1.2355 45 1 0.9098 1.6446 -1.8622 46 1 3.3034 2.7177 -2.7652 47 1 2.9917 0.9576 -2.7187 48 1 5.0519 1.7769 -1.2521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733795259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:07 Heat of formation + Delta-G solvation = -80.593703 kcal Electronic energy + Delta-G solvation = -30700.564330 eV Core-core repulsion = 26563.304312 eV Total energy + Delta-G solvation = -4137.260018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43153 -41.42158 -39.87993 -37.90685 -37.46681 -35.61324 -35.08343 -34.14268 -31.74812 -30.77911 -29.89740 -28.58292 -27.59678 -26.65908 -24.38889 -24.29279 -23.52017 -22.34618 -21.97712 -20.69870 -20.44723 -18.76005 -18.59076 -17.84423 -17.63939 -17.25243 -17.07513 -16.77245 -16.45784 -16.06101 -15.71987 -15.59149 -15.27453 -15.16249 -14.87463 -14.64143 -14.48292 -14.39114 -14.19250 -13.93392 -13.36857 -13.20812 -13.05629 -12.99804 -12.87691 -12.73963 -12.70313 -12.64194 -12.59388 -12.33638 -12.10090 -12.01972 -11.81501 -11.68644 -11.33367 -11.00644 -10.92616 -10.78757 -10.67145 -10.10517 -10.01637 -8.94016 -7.90407 -5.23776 1.22032 1.43201 1.47938 1.53752 1.55890 2.05124 2.40732 2.46417 2.80281 3.13393 3.25095 3.29078 3.41108 3.49437 3.63727 3.71789 3.76196 3.87533 3.98261 4.03344 4.25229 4.31083 4.37248 4.40527 4.53543 4.62825 4.70030 4.72755 4.75206 4.80745 4.83436 4.89582 4.91129 4.92889 5.04074 5.12283 5.14743 5.16323 5.26197 5.37784 5.42495 5.48425 5.74980 5.90731 5.93342 6.07154 6.43986 6.90360 7.07214 7.15862 7.59369 8.53768 9.26478 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.002542 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.871681 B =11012.626003 C =11239.515667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C -0.115 4.115 4 C 0.533 3.467 5 O -0.564 6.564 6 N -0.700 5.700 7 C 0.124 3.876 8 H 0.100 0.900 9 C 0.040 3.960 10 O -0.363 6.363 11 C 0.076 3.924 12 C 0.149 3.851 13 N -0.639 5.639 14 C -0.235 4.235 15 H 0.083 0.917 16 C -0.070 4.070 17 N -0.955 5.955 18 Si 0.982 3.018 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.278 1.278 22 C 0.130 3.870 23 C -0.131 4.131 24 C -0.115 4.115 25 C 0.101 3.899 26 N -0.715 5.715 27 C 0.523 3.477 28 O -0.558 6.558 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.248 0.752 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.987 -5.217 -29.771 31.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.133 4.133 3 C -0.121 4.121 4 C 0.319 3.681 5 O -0.443 6.443 6 N -0.351 5.351 7 C 0.019 3.981 8 H 0.118 0.882 9 C -0.037 4.037 10 O -0.282 6.282 11 C 0.034 3.966 12 C 0.023 3.977 13 N -0.365 5.365 14 C -0.364 4.364 15 H 0.101 0.899 16 C -0.263 4.263 17 N -0.604 5.604 18 Si 0.810 3.190 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.204 1.204 22 C 0.005 3.995 23 C -0.170 4.170 24 C -0.153 4.153 25 C -0.022 4.022 26 N -0.370 5.370 27 C 0.307 3.693 28 O -0.436 6.436 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.249 0.751 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.138 0.862 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 9.383 -4.824 -29.078 30.933 hybrid contribution 0.019 0.124 1.469 1.474 sum 9.402 -4.701 -27.610 29.543 Atomic orbital electron populations 1.21842 0.94169 1.02825 1.02249 1.21442 0.97063 0.90000 1.04833 1.21838 0.93695 0.99889 0.96708 1.20278 0.80574 0.83401 0.83828 1.90695 1.37386 1.31886 1.84304 1.46055 1.53375 1.30747 1.04898 1.22200 0.92891 0.96024 0.87017 0.88201 1.23929 0.96833 0.94202 0.88783 1.89028 1.55735 1.44777 1.38622 1.23364 0.87538 0.94689 0.90966 1.22551 0.98683 0.90348 0.86098 1.46230 1.49162 1.19515 1.21619 1.19385 1.19273 1.02325 0.95391 0.89884 1.25669 1.01009 0.96751 1.02847 1.70009 1.38573 1.11231 1.40568 0.85105 0.77968 0.76835 0.79136 1.20015 1.21907 1.20383 1.22722 0.93852 0.97132 0.85756 1.22952 0.98097 1.03669 0.92285 1.22801 0.99566 1.02196 0.90738 1.22425 0.85024 1.04871 0.89881 1.46138 1.10916 1.71368 1.08616 1.20538 0.89522 0.75361 0.83874 1.90762 1.68778 1.51401 1.32652 0.90485 0.90644 0.95060 0.87247 0.91441 0.75135 0.92306 0.88578 0.94721 0.94304 0.94310 0.92670 0.90744 0.87992 0.88136 0.90050 0.86237 0.87489 0.87587 0.73724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.48 71.98 0.68 -1.45 16 2 C -0.10 -1.22 5.03 30.59 0.15 -1.06 16 3 C -0.11 -1.88 0.48 -52.88 -0.03 -1.90 16 4 C 0.53 13.09 4.91 87.66 0.43 13.52 16 5 O -0.56 -16.91 15.33 -3.03 -0.05 -16.95 16 6 N -0.70 -18.02 4.68 -437.25 -2.05 -20.06 16 7 C 0.12 3.65 3.41 46.11 0.16 3.81 16 8 H 0.10 2.97 7.69 -2.39 -0.02 2.95 16 9 C 0.04 1.37 7.39 72.51 0.54 1.91 16 10 O -0.36 -15.17 11.45 -148.98 -1.71 -16.87 16 11 C 0.08 3.03 1.28 -10.66 -0.01 3.01 16 12 C 0.15 7.49 6.99 86.10 0.60 8.09 16 13 N -0.64 -34.98 3.71 -741.11 -2.75 -37.72 16 14 C -0.24 -14.01 10.70 84.03 0.90 -13.11 16 15 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 16 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 17 N -0.95 -60.36 11.40 21.65 0.25 -60.11 16 18 Si 0.98 47.82 29.55 68.60 2.03 49.85 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 C 0.13 5.54 8.47 86.09 0.73 6.27 16 23 C -0.13 -3.95 6.24 31.34 0.20 -3.76 16 24 C -0.12 -1.18 5.80 31.70 0.18 -1.00 16 25 C 0.10 0.43 7.78 86.83 0.68 1.10 16 26 N -0.72 -7.26 6.24 -459.78 -2.87 -10.13 16 27 C 0.52 9.62 7.16 87.90 0.63 10.24 16 28 O -0.56 -14.56 16.62 -3.03 -0.05 -14.61 16 29 H 0.08 0.82 6.84 -2.38 -0.02 0.80 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.03 0.62 6.89 -2.38 -0.02 0.61 16 32 H 0.11 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.07 1.02 8.12 -2.38 -0.02 1.00 16 34 H 0.41 10.17 7.39 -92.71 -0.68 9.49 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.10 3.05 8.06 -2.38 -0.02 3.04 16 37 H 0.04 1.73 7.96 -2.39 -0.02 1.71 16 38 H 0.04 2.23 7.20 -2.39 -0.02 2.22 16 39 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 42 H 0.10 2.72 7.67 -2.39 -0.02 2.70 16 43 H 0.10 2.84 7.84 -2.39 -0.02 2.82 16 44 H 0.08 1.19 7.16 -2.39 -0.02 1.18 16 45 H 0.12 0.74 6.55 -2.39 -0.02 0.72 16 46 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 48 H 0.42 3.01 8.96 -92.71 -0.83 2.18 16 Total: -1.00 -81.97 382.41 -1.41 -83.37 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.52 Total: 21.30 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 6.30 Total: 21.94 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -7.42 Total: -128.02 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -1.80 Total: -48.44 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -81.97 -1.41 -83.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733795259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.781 kcal (2) G-P(sol) polarization free energy of solvation -81.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds