Wall clock time and date at job start Tue Mar 31 2020 21:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 C 1.50703 * 110.43415 * 54.26083 * 3 2 1 5 5 O 1.21283 * 119.99867 * 242.50222 * 4 3 2 6 6 N 1.34776 * 120.00255 * 62.49991 * 4 3 2 7 7 C 1.46492 * 120.00465 * 175.05045 * 6 4 3 8 8 H 1.09001 * 110.76756 * 328.52736 * 7 6 4 9 9 C 1.55058 * 110.87468 * 92.28599 * 7 6 4 10 10 O 1.44607 * 103.66303 * 81.64284 * 9 7 6 11 11 C 1.42839 * 106.73504 * 39.09527 * 10 9 7 12 12 C 1.52653 * 115.96524 * 202.46954 * 11 10 9 13 13 N 1.47220 * 87.78109 * 218.40921 * 12 11 10 14 14 C 1.36940 * 135.96313 * 206.37613 * 13 12 11 15 15 H 1.07997 * 120.00207 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99389 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00643 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99595 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47291 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47223 * 300.00398 * 18 16 14 21 21 H 1.48499 * 109.47168 * 60.00662 * 18 16 14 22 22 C 1.47215 * 88.06567 * 26.63383 * 13 12 11 23 23 C 1.53319 * 108.32914 * 334.29962 * 11 10 9 24 24 C 1.54625 * 110.60190 * 176.87644 * 3 2 1 25 25 C 1.54482 * 101.76677 * 143.53113 * 24 3 2 26 26 N 1.46760 * 105.47180 * 334.59060 * 25 24 3 27 27 C 1.34421 * 111.30633 * 17.00912 * 26 25 24 28 28 O 1.21277 * 124.94679 * 179.63171 * 27 26 25 29 29 H 1.08998 * 109.47300 * 179.42965 * 1 2 3 30 30 H 1.09000 * 109.47099 * 299.43631 * 1 2 3 31 31 H 1.09007 * 109.47218 * 59.43308 * 1 2 3 32 32 H 1.09001 * 109.47218 * 240.00565 * 2 1 3 33 33 H 1.08993 * 109.47108 * 120.00166 * 2 1 3 34 34 H 0.97002 * 119.99888 * 355.04713 * 6 4 3 35 35 H 1.08994 * 110.59049 * 200.18574 * 9 7 6 36 36 H 1.08998 * 110.58443 * 323.10191 * 9 7 6 37 37 H 1.09001 * 113.50002 * 103.67812 * 12 11 10 38 38 H 1.09000 * 113.49914 * 333.13721 * 12 11 10 39 39 H 0.97000 * 120.00473 * 179.97438 * 17 16 14 40 40 H 1.09010 * 113.50137 * 88.09426 * 22 13 12 41 41 H 1.09002 * 113.50323 * 218.63426 * 22 13 12 42 42 H 1.08995 * 110.56326 * 120.19251 * 23 11 10 43 43 H 1.09002 * 110.56348 * 242.90374 * 23 11 10 44 44 H 1.08993 * 110.97475 * 261.65211 * 24 3 2 45 45 H 1.09000 * 110.96955 * 25.41364 * 24 3 2 46 46 H 1.08997 * 110.24596 * 215.58480 * 25 24 3 47 47 H 1.09003 * 110.24436 * 93.58277 * 25 24 3 48 48 H 0.97003 * 124.34814 * 197.03747 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4377 2.2135 1.1463 5 8 0.7271 3.1713 0.9259 6 7 1.6887 1.8387 2.4163 7 6 1.1936 2.6501 3.5310 8 1 1.1572 3.7041 3.2555 9 6 -0.1957 2.1499 4.0042 10 8 0.1191 1.0325 4.8665 11 6 1.2823 1.4010 5.6091 12 6 2.1086 0.2478 6.1727 13 7 2.3218 1.0653 7.3784 14 6 3.2798 1.1505 8.3532 15 1 4.1395 0.4975 8.3241 16 6 3.1462 2.0769 9.3782 17 7 2.0988 2.8731 9.4135 18 14 4.4533 2.1937 10.7077 19 1 4.0784 3.2527 11.6789 20 1 4.5599 0.8912 11.4129 21 1 5.7605 2.5298 10.0885 22 6 1.0511 1.7464 7.0807 23 6 2.0641 2.4398 4.7965 24 6 3.5839 1.4737 0.0789 25 6 3.9213 2.6795 -0.8260 26 7 2.7939 2.7970 -1.7581 27 6 1.7220 2.1165 -1.3165 28 8 0.6555 2.0518 -1.8903 29 1 -0.3634 -1.0276 -0.0102 30 1 -0.3633 0.5051 0.8950 31 1 -0.3634 0.5226 -0.8849 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1971 1.0316 2.5923 35 1 -0.7145 2.9297 4.5615 36 1 -0.7945 1.8215 3.1547 37 1 3.0228 0.0535 5.6119 38 1 1.5260 -0.6548 6.3570 39 1 2.0053 3.5203 10.1300 40 1 0.1810 1.2511 7.5119 41 1 1.0730 2.8166 7.2862 42 1 2.1584 3.3709 5.3553 43 1 3.0476 2.0544 4.5277 44 1 3.9189 1.6475 1.1014 45 1 4.0135 0.5546 -0.3198 46 1 4.8455 2.4935 -1.3732 47 1 4.0121 3.5861 -0.2278 48 1 2.8191 3.3006 -2.5868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733795260.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:11 Heat of formation + Delta-G solvation = -77.609762 kcal Electronic energy + Delta-G solvation = -30866.559136 eV Core-core repulsion = 26729.428512 eV Total energy + Delta-G solvation = -4137.130624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46016 -41.46552 -39.80822 -37.94657 -37.45366 -35.78036 -35.13214 -34.13815 -31.69380 -30.93229 -29.86249 -28.38963 -27.45274 -26.50458 -24.38002 -23.91864 -23.79607 -22.95274 -21.88773 -20.53192 -20.34481 -18.75752 -18.65635 -18.28036 -17.75779 -17.07180 -16.77432 -16.63459 -16.50678 -15.88363 -15.63020 -15.55192 -15.49008 -15.23223 -14.71371 -14.50176 -14.41261 -14.16296 -14.10763 -14.06528 -13.74167 -13.30330 -13.03973 -12.82312 -12.80105 -12.72826 -12.61390 -12.58111 -12.41573 -12.34615 -12.20947 -12.13591 -11.90823 -11.82136 -11.45996 -10.92635 -10.85590 -10.66591 -10.53354 -10.08221 -10.00461 -8.95586 -7.89717 -5.24796 1.32938 1.45496 1.49069 1.52386 1.58408 2.11121 2.43762 2.45986 2.89225 3.08948 3.29088 3.39873 3.43471 3.54353 3.62891 3.67518 3.72659 3.82234 3.99037 4.04871 4.29016 4.33362 4.38779 4.49220 4.60844 4.68683 4.73591 4.76709 4.81263 4.83921 4.89221 4.91260 4.97106 5.01019 5.02284 5.06082 5.13110 5.16475 5.23673 5.39185 5.41918 5.49447 5.81590 5.87881 6.00252 6.10326 6.43561 6.89132 7.10056 7.22326 7.59822 8.58339 9.27628 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.002763 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.702950 B =10131.757412 C =10621.164901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.116 4.116 4 C 0.542 3.458 5 O -0.575 6.575 6 N -0.693 5.693 7 C 0.124 3.876 8 H 0.105 0.895 9 C 0.037 3.963 10 O -0.368 6.368 11 C 0.070 3.930 12 C 0.131 3.869 13 N -0.626 5.626 14 C -0.226 4.226 15 H 0.094 0.906 16 C -0.066 4.066 17 N -0.954 5.954 18 Si 0.981 3.019 19 H -0.299 1.299 20 H -0.279 1.279 21 H -0.269 1.269 22 C 0.139 3.861 23 C -0.103 4.103 24 C -0.120 4.120 25 C 0.093 3.907 26 N -0.723 5.723 27 C 0.534 3.466 28 O -0.561 6.561 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.417 0.583 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.248 0.752 40 H 0.004 0.996 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.072 0.928 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -4.150 -22.418 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.132 4.132 3 C -0.123 4.123 4 C 0.328 3.672 5 O -0.454 6.454 6 N -0.346 5.346 7 C 0.019 3.981 8 H 0.123 0.877 9 C -0.041 4.041 10 O -0.286 6.286 11 C 0.029 3.971 12 C 0.005 3.995 13 N -0.354 5.354 14 C -0.354 4.354 15 H 0.112 0.888 16 C -0.259 4.259 17 N -0.602 5.602 18 Si 0.809 3.191 19 H -0.225 1.225 20 H -0.205 1.205 21 H -0.195 1.195 22 C 0.012 3.988 23 C -0.141 4.141 24 C -0.158 4.158 25 C -0.030 4.030 26 N -0.378 5.378 27 C 0.319 3.681 28 O -0.439 6.439 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.255 0.745 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.090 0.910 48 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.445 -3.630 -22.460 23.647 hybrid contribution -0.045 0.499 1.057 1.169 sum 6.400 -3.131 -21.404 22.558 Atomic orbital electron populations 1.21942 0.96572 1.02383 1.01570 1.21503 0.95723 0.90503 1.05481 1.21752 1.00503 0.98534 0.91473 1.20123 0.79626 0.83475 0.83944 1.90755 1.38821 1.30622 1.85159 1.45690 1.56377 1.28671 1.03817 1.22365 0.93221 0.96560 0.85992 0.87735 1.24016 0.96835 0.89694 0.93540 1.88758 1.45558 1.38486 1.55797 1.23455 0.86247 0.96642 0.90762 1.22524 0.96909 0.93208 0.86817 1.45585 1.20856 1.41263 1.27680 1.19299 0.99038 1.15732 1.01326 0.88844 1.25664 1.00214 0.98794 1.01207 1.70025 1.30837 1.24804 1.34550 0.85118 0.78623 0.76948 0.78424 1.22545 1.20531 1.19473 1.22489 0.87840 0.97423 0.90999 1.22548 0.99366 0.99128 0.93032 1.23005 0.88295 1.01085 1.03382 1.22390 0.89969 0.98885 0.91792 1.46190 1.14122 1.51828 1.25620 1.20437 0.83209 0.78387 0.86086 1.90669 1.26495 1.63267 1.63449 0.90843 0.94676 0.92818 0.88778 0.87609 0.74494 0.91307 0.88827 0.90474 0.94369 0.94314 0.97795 0.93687 0.90092 0.87546 0.86920 0.85314 0.86022 0.90997 0.74213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.41 71.98 0.68 -2.92 16 2 C -0.09 -1.36 4.87 30.59 0.15 -1.21 16 3 C -0.12 -1.95 0.49 -52.93 -0.03 -1.97 16 4 C 0.54 12.51 5.02 87.66 0.44 12.95 16 5 O -0.57 -18.95 15.81 -3.04 -0.05 -19.00 16 6 N -0.69 -13.65 4.74 -435.93 -2.07 -15.72 16 7 C 0.12 3.09 3.48 46.39 0.16 3.25 16 8 H 0.10 2.71 7.62 -2.39 -0.02 2.70 16 9 C 0.04 1.05 7.42 72.69 0.54 1.59 16 10 O -0.37 -12.37 11.32 -148.98 -1.69 -14.06 16 11 C 0.07 2.47 1.66 -10.83 -0.02 2.45 16 12 C 0.13 4.91 8.20 83.39 0.68 5.60 16 13 N -0.63 -30.70 3.74 -739.24 -2.77 -33.47 16 14 C -0.23 -12.06 10.74 84.03 0.90 -11.15 16 15 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 16 C -0.07 -3.61 5.50 84.86 0.47 -3.15 16 17 N -0.95 -56.56 11.51 21.65 0.25 -56.31 16 18 Si 0.98 43.94 29.55 68.60 2.03 45.97 16 19 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 22 C 0.14 6.63 6.91 83.48 0.58 7.20 16 23 C -0.10 -2.92 6.11 31.40 0.19 -2.73 16 24 C -0.12 -0.85 6.20 31.65 0.20 -0.65 16 25 C 0.09 0.71 7.78 86.83 0.68 1.38 16 26 N -0.72 -10.70 6.24 -459.81 -2.87 -13.57 16 27 C 0.53 12.25 6.45 87.90 0.57 12.82 16 28 O -0.56 -18.10 15.56 -3.02 -0.05 -18.14 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 0.87 7.14 -2.39 -0.02 0.85 16 31 H 0.05 1.48 5.79 -2.38 -0.01 1.46 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 0.97 7.84 -2.39 -0.02 0.95 16 34 H 0.42 6.06 8.18 -92.71 -0.76 5.30 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 2.40 7.91 -2.39 -0.02 2.38 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 41 H 0.04 2.38 6.93 -2.39 -0.02 2.36 16 42 H 0.08 2.64 7.82 -2.39 -0.02 2.62 16 43 H 0.11 2.56 7.70 -2.39 -0.02 2.54 16 44 H 0.11 0.55 7.53 -2.39 -0.02 0.53 16 45 H 0.13 0.20 7.92 -2.39 -0.02 0.18 16 46 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.42 5.05 8.96 -92.71 -0.83 4.22 16 Total: -1.00 -80.63 382.66 -1.62 -82.25 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.59 Total: 18.56 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 6.18 Total: 23.48 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -7.45 Total: -119.06 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.78 Total: -51.20 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -80.63 -1.62 -82.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733795260.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.635 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds