Wall clock time and date at job start Tue Mar 31 2020 21:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 C 1.50706 * 110.43391 * 54.26349 * 3 2 1 5 5 O 1.21283 * 119.99696 * 244.91721 * 4 3 2 6 6 N 1.34776 * 119.99999 * 64.91987 * 4 3 2 7 7 C 1.46496 * 120.00003 * 175.05596 * 6 4 3 8 8 H 1.09005 * 110.88739 * 37.07402 * 7 6 4 9 9 C 1.54455 * 110.82778 * 273.54909 * 7 6 4 10 10 O 1.43523 * 107.65607 * 220.46995 * 9 7 6 11 11 C 1.42548 * 109.63873 * 359.30489 * 10 9 7 12 12 C 1.52947 * 116.15727 * 253.34688 * 11 10 9 13 13 N 1.47771 * 85.80230 * 218.93648 * 12 11 10 14 14 C 1.36937 * 134.40888 * 203.90268 * 13 12 11 15 15 H 1.08007 * 119.99625 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00181 * 0.02623 * 14 13 12 17 17 N 1.31617 * 119.99949 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00144 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46767 * 90.00072 * 18 16 14 20 20 H 1.48495 * 109.46999 * 209.99896 * 18 16 14 21 21 H 1.48498 * 109.47138 * 330.00580 * 18 16 14 22 22 C 1.47776 * 91.18153 * 23.91945 * 13 12 11 23 23 C 1.54009 * 106.48315 * 23.04602 * 11 10 9 24 24 C 1.54627 * 110.48990 * 176.80599 * 3 2 1 25 25 C 1.54826 * 101.60611 * 143.56878 * 24 3 2 26 26 N 1.46766 * 105.49664 * 334.56901 * 25 24 3 27 27 C 1.34423 * 111.29790 * 17.03434 * 26 25 24 28 28 O 1.21281 * 124.94083 * 179.55263 * 27 26 25 29 29 H 1.09000 * 109.47695 * 299.45045 * 1 2 3 30 30 H 1.09004 * 109.47467 * 59.44816 * 1 2 3 31 31 H 1.09004 * 109.47414 * 179.44708 * 1 2 3 32 32 H 1.08999 * 109.47013 * 240.00101 * 2 1 3 33 33 H 1.08999 * 109.47206 * 119.99730 * 2 1 3 34 34 H 0.97004 * 120.00121 * 355.05584 * 6 4 3 35 35 H 1.09001 * 109.83664 * 100.91214 * 9 7 6 36 36 H 1.08998 * 109.82996 * 340.02500 * 9 7 6 37 37 H 1.08994 * 113.82165 * 333.15926 * 12 11 10 38 38 H 1.09008 * 113.82003 * 104.71903 * 12 11 10 39 39 H 0.97001 * 120.00346 * 180.02562 * 17 16 14 40 40 H 1.08996 * 113.82014 * 221.85390 * 22 13 12 41 41 H 1.08996 * 113.81230 * 90.29741 * 22 13 12 42 42 H 1.09001 * 111.16027 * 82.72209 * 23 11 10 43 43 H 1.09000 * 111.15139 * 206.91930 * 23 11 10 44 44 H 1.08999 * 110.96531 * 261.73326 * 24 3 2 45 45 H 1.09007 * 110.96462 * 25.48878 * 24 3 2 46 46 H 1.09004 * 110.21740 * 215.57089 * 25 24 3 47 47 H 1.09000 * 110.25127 * 93.58355 * 25 24 3 48 48 H 0.96998 * 124.35309 * 197.06002 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4377 2.2135 1.1463 5 8 0.6920 3.1443 0.9257 6 7 1.7277 1.8688 2.4165 7 6 1.2305 2.6830 3.5283 8 1 0.2285 3.0571 3.3182 9 6 2.1988 3.8472 3.8324 10 8 2.2851 3.9804 5.2588 11 6 1.4439 3.0130 5.8820 12 6 0.1554 3.5452 6.5111 13 7 0.4121 2.5745 7.5953 14 6 -0.3743 1.9399 8.5194 15 1 0.0694 1.2544 9.2264 16 6 -1.7416 2.1775 8.5476 17 7 -2.2823 3.0124 7.6857 18 14 -2.8144 1.3112 9.8078 19 1 -2.8968 2.1373 11.0391 20 1 -4.1767 1.1183 9.2491 21 1 -2.2226 -0.0103 10.1370 22 6 1.8567 2.5625 7.2840 23 6 1.2520 1.8773 4.8596 24 6 3.5839 1.4708 0.0807 25 6 3.9211 2.6796 -0.8261 26 7 2.7936 2.7971 -1.7583 27 6 1.7219 2.1165 -1.3165 28 8 0.6549 2.0528 -1.8896 29 1 -0.3634 0.5053 0.8948 30 1 -0.3634 0.5224 -0.8850 31 1 -0.3634 -1.0276 -0.0099 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2658 1.0815 2.5946 35 1 1.8156 4.7703 3.3973 36 1 3.1838 3.6259 3.4214 37 1 0.2176 4.5861 6.8283 38 1 -0.7407 3.3285 5.9294 39 1 -3.2377 3.1788 7.7055 40 1 2.3051 1.5695 7.3132 41 1 2.4316 3.3074 7.8342 42 1 2.0903 1.1809 4.8831 43 1 0.3076 1.3577 5.0216 44 1 3.9178 1.6429 1.1039 45 1 4.0122 0.5513 -0.3184 46 1 4.8452 2.4936 -1.3734 47 1 4.0120 3.5862 -0.2279 48 1 2.8187 3.3007 -2.5869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733795262.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:19 Heat of formation + Delta-G solvation = -51.367861 kcal Electronic energy + Delta-G solvation = -30711.335651 eV Core-core repulsion = 26575.342961 eV Total energy + Delta-G solvation = -4135.992690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63260 -40.04519 -38.74407 -36.65996 -36.28522 -34.90234 -34.33277 -32.10321 -30.66571 -30.00944 -28.19108 -27.64981 -25.83477 -24.95478 -23.47981 -23.08729 -22.34903 -22.02314 -20.87013 -19.64126 -18.75775 -17.90851 -17.50759 -16.81806 -16.62799 -15.87812 -15.55805 -15.44345 -15.05880 -14.86867 -14.64356 -14.55278 -14.05560 -13.92054 -13.74738 -13.58252 -13.45283 -13.20401 -12.90633 -12.76024 -12.63165 -12.12744 -12.01898 -11.98395 -11.68179 -11.48372 -11.42132 -11.19567 -11.11930 -10.94133 -10.86085 -10.73980 -10.33581 -10.03072 -9.99432 -9.80875 -9.58368 -9.44149 -9.17117 -8.83279 -8.77960 -6.93557 -5.79523 -3.13118 2.17619 2.37924 2.87357 3.14090 3.38037 3.42416 3.45212 3.72731 3.92509 4.14255 4.18804 4.40601 4.48202 4.55034 4.64810 4.75995 4.96687 5.04254 5.08259 5.14191 5.18453 5.20636 5.27726 5.29654 5.35526 5.37510 5.46347 5.52889 5.74787 5.85140 5.89581 5.92739 6.08055 6.26904 6.27525 6.32613 6.40557 6.43832 6.55607 6.66501 6.69224 7.00043 7.19888 7.27399 7.48643 7.66646 7.93488 7.96262 8.01295 9.00752 9.66962 10.54156 11.37388 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.002817 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.405570 B = 9935.992707 C =10667.367209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.119 4.119 4 C 0.539 3.461 5 O -0.519 6.519 6 N -0.712 5.712 7 C 0.112 3.888 8 H 0.108 0.892 9 C 0.047 3.953 10 O -0.368 6.368 11 C 0.056 3.944 12 C 0.156 3.844 13 N -0.604 5.604 14 C -0.224 4.224 15 H 0.082 0.918 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.130 3.870 23 C -0.120 4.120 24 C -0.127 4.127 25 C 0.099 3.901 26 N -0.731 5.731 27 C 0.549 3.451 28 O -0.506 6.506 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.255 0.745 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.578 -5.410 -18.283 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.133 4.133 3 C -0.126 4.126 4 C 0.323 3.677 5 O -0.393 6.393 6 N -0.365 5.365 7 C 0.007 3.993 8 H 0.126 0.874 9 C -0.032 4.032 10 O -0.286 6.286 11 C 0.015 3.985 12 C 0.031 3.969 13 N -0.333 5.333 14 C -0.351 4.351 15 H 0.099 0.901 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.004 3.996 23 C -0.158 4.158 24 C -0.165 4.165 25 C -0.025 4.025 26 N -0.388 5.388 27 C 0.333 3.667 28 O -0.379 6.379 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.237 0.763 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 15.273 -4.734 -18.383 24.364 hybrid contribution -0.319 -0.510 0.461 0.758 sum 14.953 -5.245 -17.922 23.923 Atomic orbital electron populations 1.21996 0.94116 1.02324 1.04244 1.21416 0.97918 0.90752 1.03249 1.21762 0.97673 0.98938 0.94221 1.19657 0.80910 0.83896 0.83237 1.90801 1.34731 1.29406 1.84370 1.45822 1.55292 1.30403 1.04984 1.22697 0.99325 0.91576 0.85717 0.87419 1.23428 0.98405 0.98148 0.83196 1.88315 1.66619 1.57152 1.16473 1.24193 0.93799 0.87853 0.92615 1.22557 0.93588 0.92842 0.87930 1.45723 1.00758 1.48751 1.38046 1.18959 0.88318 1.18965 1.08895 0.90065 1.24800 0.96565 0.99548 0.99347 1.69817 1.11095 1.38071 1.37486 0.86116 0.79997 0.78946 0.80658 1.21564 1.21591 1.20581 1.22546 0.88780 0.98058 0.90246 1.22985 1.04205 0.97409 0.91195 1.22904 0.91869 0.99649 1.02106 1.22144 0.89774 0.98743 0.91866 1.46070 1.14107 1.53330 1.25270 1.19895 0.83322 0.78137 0.85348 1.90711 1.24307 1.61128 1.61791 0.92553 0.89907 0.92203 0.90512 0.90416 0.76346 0.91229 0.91850 0.94687 0.90565 0.93495 0.93285 0.93900 0.90472 0.88162 0.88403 0.88415 0.89599 0.90719 0.74755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.41 37.16 0.35 -1.56 16 2 C -0.10 -0.78 4.93 -26.73 -0.13 -0.92 16 3 C -0.12 -1.11 0.48 -155.67 -0.08 -1.19 16 4 C 0.54 6.72 5.04 -10.98 -0.06 6.67 16 5 O -0.52 -9.02 15.84 5.55 0.09 -8.93 16 6 N -0.71 -7.65 4.72 -51.71 -0.24 -7.89 16 7 C 0.11 1.58 3.33 -65.77 -0.22 1.36 16 8 H 0.11 1.82 7.65 -51.93 -0.40 1.42 16 9 C 0.05 0.67 7.57 37.92 0.29 0.96 16 10 O -0.37 -6.56 11.17 -35.23 -0.39 -6.95 16 11 C 0.06 1.06 1.48 -90.31 -0.13 0.92 16 12 C 0.16 3.74 6.99 -3.38 -0.02 3.71 16 13 N -0.60 -15.27 3.69 -183.24 -0.68 -15.94 16 14 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 15 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.07 11.40 55.49 0.63 -26.44 16 18 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.13 2.65 8.49 -3.38 -0.03 2.62 16 23 C -0.12 -1.85 6.03 -24.80 -0.15 -2.00 16 24 C -0.13 -0.64 6.18 -24.91 -0.15 -0.80 16 25 C 0.10 0.51 7.79 -2.93 -0.02 0.49 16 26 N -0.73 -5.97 6.24 -59.01 -0.37 -6.34 16 27 C 0.55 6.54 6.45 -10.86 -0.07 6.47 16 28 O -0.51 -8.07 15.56 5.56 0.09 -7.98 16 29 H 0.06 0.73 7.13 -51.93 -0.37 0.36 16 30 H 0.08 1.14 5.79 -51.93 -0.30 0.84 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.46 8.01 -51.93 -0.42 0.05 16 34 H 0.40 3.05 8.08 -40.82 -0.33 2.72 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.76 8.02 -51.93 -0.42 0.34 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.98 7.16 -51.92 -0.37 1.61 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.05 0.91 8.11 -51.93 -0.42 0.48 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.98 7.98 -51.93 -0.41 0.56 16 43 H 0.10 1.78 8.05 -51.93 -0.42 1.36 16 44 H 0.10 0.39 7.34 -51.93 -0.38 0.01 16 45 H 0.10 0.29 7.92 -51.92 -0.41 -0.13 16 46 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.41 2.73 8.96 -40.82 -0.37 2.36 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -36.29 383.19 -8.33 -44.62 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.52 Total: 3.02 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -0.68 Total: 10.17 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.66 Total: -56.61 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.22 Total: -23.86 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.29 -8.33 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733795262.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.747 kcal (2) G-P(sol) polarization free energy of solvation -36.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds