Wall clock time and date at job start Tue Mar 31 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 C 1.50706 * 110.43391 * 54.26349 * 3 2 1 5 5 O 1.21283 * 119.99696 * 244.91721 * 4 3 2 6 6 N 1.34776 * 119.99999 * 64.91987 * 4 3 2 7 7 C 1.46496 * 120.00003 * 175.05596 * 6 4 3 8 8 H 1.09005 * 110.88739 * 37.07402 * 7 6 4 9 9 C 1.54455 * 110.82778 * 273.54909 * 7 6 4 10 10 O 1.43523 * 107.65607 * 220.46995 * 9 7 6 11 11 C 1.42548 * 109.63873 * 359.30489 * 10 9 7 12 12 C 1.52947 * 116.15727 * 253.34688 * 11 10 9 13 13 N 1.47771 * 85.80230 * 218.93648 * 12 11 10 14 14 C 1.36937 * 134.40888 * 203.90268 * 13 12 11 15 15 H 1.08007 * 119.99625 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00181 * 0.02623 * 14 13 12 17 17 N 1.31617 * 119.99949 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00144 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46767 * 90.00072 * 18 16 14 20 20 H 1.48495 * 109.46999 * 209.99896 * 18 16 14 21 21 H 1.48498 * 109.47138 * 330.00580 * 18 16 14 22 22 C 1.47776 * 91.18153 * 23.91945 * 13 12 11 23 23 C 1.54009 * 106.48315 * 23.04602 * 11 10 9 24 24 C 1.54627 * 110.48990 * 176.80599 * 3 2 1 25 25 C 1.54826 * 101.60611 * 143.56878 * 24 3 2 26 26 N 1.46766 * 105.49664 * 334.56901 * 25 24 3 27 27 C 1.34423 * 111.29790 * 17.03434 * 26 25 24 28 28 O 1.21281 * 124.94083 * 179.55263 * 27 26 25 29 29 H 1.09000 * 109.47695 * 299.45045 * 1 2 3 30 30 H 1.09004 * 109.47467 * 59.44816 * 1 2 3 31 31 H 1.09004 * 109.47414 * 179.44708 * 1 2 3 32 32 H 1.08999 * 109.47013 * 240.00101 * 2 1 3 33 33 H 1.08999 * 109.47206 * 119.99730 * 2 1 3 34 34 H 0.97004 * 120.00121 * 355.05584 * 6 4 3 35 35 H 1.09001 * 109.83664 * 100.91214 * 9 7 6 36 36 H 1.08998 * 109.82996 * 340.02500 * 9 7 6 37 37 H 1.08994 * 113.82165 * 333.15926 * 12 11 10 38 38 H 1.09008 * 113.82003 * 104.71903 * 12 11 10 39 39 H 0.97001 * 120.00346 * 180.02562 * 17 16 14 40 40 H 1.08996 * 113.82014 * 221.85390 * 22 13 12 41 41 H 1.08996 * 113.81230 * 90.29741 * 22 13 12 42 42 H 1.09001 * 111.16027 * 82.72209 * 23 11 10 43 43 H 1.09000 * 111.15139 * 206.91930 * 23 11 10 44 44 H 1.08999 * 110.96531 * 261.73326 * 24 3 2 45 45 H 1.09007 * 110.96462 * 25.48878 * 24 3 2 46 46 H 1.09004 * 110.21740 * 215.57089 * 25 24 3 47 47 H 1.09000 * 110.25127 * 93.58355 * 25 24 3 48 48 H 0.96998 * 124.35309 * 197.06002 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4377 2.2135 1.1463 5 8 0.6920 3.1443 0.9257 6 7 1.7277 1.8688 2.4165 7 6 1.2305 2.6830 3.5283 8 1 0.2285 3.0571 3.3182 9 6 2.1988 3.8472 3.8324 10 8 2.2851 3.9804 5.2588 11 6 1.4439 3.0130 5.8820 12 6 0.1554 3.5452 6.5111 13 7 0.4121 2.5745 7.5953 14 6 -0.3743 1.9399 8.5194 15 1 0.0694 1.2544 9.2264 16 6 -1.7416 2.1775 8.5476 17 7 -2.2823 3.0124 7.6857 18 14 -2.8144 1.3112 9.8078 19 1 -2.8968 2.1373 11.0391 20 1 -4.1767 1.1183 9.2491 21 1 -2.2226 -0.0103 10.1370 22 6 1.8567 2.5625 7.2840 23 6 1.2520 1.8773 4.8596 24 6 3.5839 1.4708 0.0807 25 6 3.9211 2.6796 -0.8261 26 7 2.7936 2.7971 -1.7583 27 6 1.7219 2.1165 -1.3165 28 8 0.6549 2.0528 -1.8896 29 1 -0.3634 0.5053 0.8948 30 1 -0.3634 0.5224 -0.8850 31 1 -0.3634 -1.0276 -0.0099 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2658 1.0815 2.5946 35 1 1.8156 4.7703 3.3973 36 1 3.1838 3.6259 3.4214 37 1 0.2176 4.5861 6.8283 38 1 -0.7407 3.3285 5.9294 39 1 -3.2377 3.1788 7.7055 40 1 2.3051 1.5695 7.3132 41 1 2.4316 3.3074 7.8342 42 1 2.0903 1.1809 4.8831 43 1 0.3076 1.3577 5.0216 44 1 3.9178 1.6429 1.1039 45 1 4.0122 0.5513 -0.3184 46 1 4.8452 2.4936 -1.3734 47 1 4.0120 3.5862 -0.2279 48 1 2.8187 3.3007 -2.5869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733795262.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:18 Heat of formation + Delta-G solvation = -81.542538 kcal Electronic energy + Delta-G solvation = -30712.644124 eV Core-core repulsion = 26575.342961 eV Total energy + Delta-G solvation = -4137.301162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46732 -41.42486 -39.84927 -37.89520 -37.46894 -35.92743 -35.25210 -34.13806 -31.68094 -30.89397 -29.84982 -28.38426 -27.49681 -26.72065 -24.36906 -23.89459 -23.82616 -22.99315 -21.97907 -20.61242 -20.27208 -18.78633 -18.66484 -18.26092 -17.82475 -17.15728 -16.77519 -16.53387 -16.49193 -16.28539 -15.66443 -15.56502 -15.36163 -15.09699 -14.73832 -14.51352 -14.38513 -14.26699 -14.14865 -14.11105 -13.68602 -13.38751 -13.29683 -12.89063 -12.83496 -12.82610 -12.68707 -12.61404 -12.60319 -12.34727 -12.21987 -11.98901 -11.83168 -11.76337 -11.49068 -10.99519 -10.87063 -10.69197 -10.35144 -10.24308 -10.08534 -8.97843 -7.91647 -5.26928 1.28939 1.42091 1.46130 1.48340 1.57116 2.04628 2.40995 2.44227 2.84116 3.07357 3.19120 3.33862 3.40352 3.48334 3.59040 3.70150 3.75170 3.81248 4.03312 4.05248 4.07920 4.28175 4.36326 4.47726 4.64619 4.68628 4.73987 4.76625 4.79300 4.82129 4.86796 4.90558 4.94996 4.98952 5.03995 5.06174 5.11657 5.14593 5.21167 5.35072 5.39204 5.49101 5.81944 5.86137 5.99450 6.16579 6.39742 6.87660 7.09294 7.21366 7.58397 8.51609 9.25259 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.002817 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.405570 B = 9935.992707 C =10667.367209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.115 4.115 4 C 0.538 3.462 5 O -0.577 6.577 6 N -0.691 5.691 7 C 0.123 3.877 8 H 0.068 0.932 9 C 0.047 3.953 10 O -0.376 6.376 11 C 0.079 3.921 12 C 0.147 3.853 13 N -0.629 5.629 14 C -0.230 4.230 15 H 0.093 0.907 16 C -0.068 4.068 17 N -0.955 5.955 18 Si 0.980 3.020 19 H -0.289 1.289 20 H -0.298 1.298 21 H -0.261 1.261 22 C 0.133 3.867 23 C -0.107 4.107 24 C -0.117 4.117 25 C 0.091 3.909 26 N -0.724 5.724 27 C 0.531 3.469 28 O -0.563 6.563 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.423 0.577 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.006 0.994 38 H 0.043 0.957 39 H 0.247 0.753 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.132 0.868 46 H 0.124 0.876 47 H 0.072 0.928 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.877 -8.114 -18.308 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.130 4.130 3 C -0.122 4.122 4 C 0.325 3.675 5 O -0.455 6.455 6 N -0.345 5.345 7 C 0.017 3.983 8 H 0.086 0.914 9 C -0.031 4.031 10 O -0.294 6.294 11 C 0.038 3.962 12 C 0.021 3.979 13 N -0.357 5.357 14 C -0.358 4.358 15 H 0.111 0.889 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.808 3.192 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.185 1.185 22 C 0.008 3.992 23 C -0.145 4.145 24 C -0.155 4.155 25 C -0.033 4.033 26 N -0.378 5.378 27 C 0.315 3.685 28 O -0.441 6.441 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.024 0.976 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.141 0.859 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.151 0.849 46 H 0.142 0.858 47 H 0.091 0.909 48 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 19.694 -7.471 -18.393 27.964 hybrid contribution -1.616 0.436 0.422 1.727 sum 18.078 -7.036 -17.971 26.443 Atomic orbital electron populations 1.21965 0.97142 1.02346 1.01332 1.21523 0.95174 0.90441 1.05903 1.21766 1.00906 0.98444 0.91048 1.20288 0.79845 0.83191 0.84181 1.90788 1.37277 1.32269 1.85198 1.45531 1.54848 1.30523 1.03580 1.22256 0.97791 0.91870 0.86369 0.91355 1.23589 1.00408 0.97735 0.81376 1.88298 1.65588 1.57164 1.18365 1.23685 0.90679 0.88559 0.93305 1.22459 0.95418 0.91458 0.88585 1.46037 1.03239 1.48612 1.37859 1.19431 0.88886 1.18585 1.08916 0.88899 1.25683 0.98116 1.00791 1.01519 1.70040 1.10684 1.40144 1.39553 0.85049 0.77649 0.78579 0.77891 1.21615 1.22439 1.18483 1.22690 0.86212 0.99814 0.90485 1.22875 1.04689 0.96704 0.90215 1.23102 0.87636 1.01115 1.03603 1.22495 0.89901 0.99015 0.91841 1.46210 1.14175 1.51756 1.25678 1.20514 0.83227 0.78525 0.86201 1.90679 1.26608 1.63289 1.63541 0.95222 0.93085 0.90652 0.88487 0.86911 0.73721 0.92386 0.87719 0.97629 0.93856 0.94399 0.90000 0.93684 0.85870 0.90760 0.86351 0.84940 0.85823 0.90927 0.74265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 9.41 71.98 0.68 -3.18 16 2 C -0.09 -1.25 4.93 30.59 0.15 -1.10 16 3 C -0.11 -1.87 0.48 -52.93 -0.03 -1.90 16 4 C 0.54 12.89 5.04 87.66 0.44 13.33 16 5 O -0.58 -20.91 15.84 -3.04 -0.05 -20.96 16 6 N -0.69 -13.09 4.72 -435.91 -2.06 -15.15 16 7 C 0.12 3.39 3.33 46.39 0.15 3.54 16 8 H 0.07 2.46 7.65 -2.38 -0.02 2.44 16 9 C 0.05 1.26 7.57 72.48 0.55 1.81 16 10 O -0.38 -12.83 11.17 -148.98 -1.66 -14.49 16 11 C 0.08 2.91 1.48 -10.44 -0.02 2.90 16 12 C 0.15 7.35 6.99 86.12 0.60 7.95 16 13 N -0.63 -32.04 3.69 -739.79 -2.73 -34.77 16 14 C -0.23 -12.70 10.70 84.03 0.90 -11.80 16 15 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 16 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 17 N -0.96 -58.90 11.40 21.65 0.25 -58.66 16 18 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 22 C 0.13 5.17 8.49 86.11 0.73 5.90 16 23 C -0.11 -3.10 6.03 31.84 0.19 -2.91 16 24 C -0.12 -0.56 6.18 31.77 0.20 -0.37 16 25 C 0.09 0.57 7.79 86.95 0.68 1.25 16 26 N -0.72 -10.61 6.24 -459.20 -2.87 -13.47 16 27 C 0.53 12.42 6.45 87.90 0.57 12.99 16 28 O -0.56 -18.97 15.56 -3.03 -0.05 -19.02 16 29 H 0.03 0.79 7.13 -2.39 -0.02 0.78 16 30 H 0.05 1.50 5.79 -2.39 -0.01 1.48 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 0.75 8.01 -2.39 -0.02 0.73 16 34 H 0.42 4.33 8.08 -92.71 -0.75 3.58 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 2.03 8.02 -2.39 -0.02 2.01 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.04 2.42 7.16 -2.38 -0.02 2.40 16 39 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.12 2.48 7.98 -2.39 -0.02 2.46 16 43 H 0.07 2.62 8.05 -2.39 -0.02 2.60 16 44 H 0.12 0.15 7.34 -2.39 -0.02 0.14 16 45 H 0.13 -0.16 7.92 -2.38 -0.02 -0.18 16 46 H 0.12 -0.08 8.14 -2.39 -0.02 -0.09 16 47 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.42 5.11 8.96 -92.71 -0.83 4.28 16 Total: -1.00 -88.11 383.19 -1.46 -89.57 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.59 Total: 14.29 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 6.26 Total: 24.99 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -7.41 Total: -122.05 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -1.76 Total: -54.47 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -88.11 -1.46 -89.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733795262.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.023 kcal (2) G-P(sol) polarization free energy of solvation -88.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds