Wall clock time and date at job start Tue Mar 31 2020 21:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 N 1.46502 * 109.44965 * 303.92890 * 3 2 1 5 5 C 1.36939 * 120.00203 * 297.79283 * 4 3 2 6 6 H 1.08003 * 120.00007 * 356.64105 * 5 4 3 7 7 C 1.38809 * 120.00298 * 176.65006 * 5 4 3 8 8 N 1.31625 * 119.99963 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47136 * 60.00009 * 9 7 5 11 11 H 1.48498 * 109.46920 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47235 * 299.99608 * 9 7 5 13 13 C 1.53037 * 109.46599 * 63.89593 * 3 2 1 14 14 C 1.53189 * 109.31453 * 181.38341 * 13 3 2 15 15 N 1.46922 * 108.77897 * 305.36850 * 14 13 3 16 16 C 1.34777 * 120.62625 * 233.60922 * 15 14 13 17 17 O 1.21283 * 119.99679 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00416 * 359.97438 * 16 15 14 19 19 N 1.46503 * 109.47183 * 180.02562 * 18 16 15 20 20 C 1.33881 * 122.75779 * 269.71085 * 19 18 16 21 21 O 1.21222 * 125.39780 * 359.97438 * 20 19 18 22 22 C 1.51320 * 109.19891 * 179.84005 * 20 19 18 23 23 C 1.54224 * 103.55738 * 0.38820 * 22 20 19 24 24 C 1.33874 * 122.76272 * 89.99694 * 19 18 16 25 25 O 1.21228 * 125.39721 * 359.97438 * 24 19 18 26 26 C 1.46924 * 118.74013 * 53.60604 * 15 14 13 27 27 C 1.53040 * 109.45779 * 183.96965 * 3 2 1 28 28 H 1.09004 * 109.47246 * 294.37413 * 1 2 3 29 29 H 1.09004 * 109.47207 * 54.36402 * 1 2 3 30 30 H 1.08993 * 109.47577 * 174.36710 * 1 2 3 31 31 H 1.08993 * 109.46974 * 240.00016 * 2 1 3 32 32 H 1.08994 * 109.47054 * 119.99567 * 2 1 3 33 33 H 0.96996 * 120.00303 * 117.78043 * 4 3 2 34 34 H 0.96997 * 120.00051 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.49525 * 301.34022 * 13 3 2 36 36 H 1.09000 * 109.49661 * 61.43045 * 13 3 2 37 37 H 1.09005 * 109.58243 * 65.15771 * 14 13 3 38 38 H 1.09001 * 109.58521 * 185.57367 * 14 13 3 39 39 H 1.09001 * 109.46673 * 299.99928 * 18 16 15 40 40 H 1.08995 * 109.47078 * 60.00050 * 18 16 15 41 41 H 1.08998 * 110.79348 * 241.77057 * 22 20 19 42 42 H 1.09006 * 110.54338 * 118.87650 * 22 20 19 43 43 H 1.09000 * 110.60190 * 241.25492 * 23 22 20 44 44 H 1.08999 * 110.60595 * 118.29421 * 23 22 20 45 45 H 1.08998 * 109.58865 * 186.60945 * 26 15 14 46 46 H 1.09002 * 109.58492 * 66.17775 * 26 15 14 47 47 H 1.08999 * 109.49190 * 298.55898 * 27 3 2 48 48 H 1.08996 * 109.50269 * 58.65849 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4756 2.1595 -1.1462 5 6 1.7618 1.7471 -2.4203 6 1 2.4465 0.9275 -2.5816 7 6 1.1722 2.3825 -3.5044 8 7 0.3376 3.3811 -3.3079 9 14 1.5633 1.8203 -5.2424 10 1 1.1695 0.3975 -5.4029 11 1 0.8105 2.6543 -6.2135 12 1 3.0202 1.9620 -5.4925 13 6 1.6114 2.1350 1.2957 14 6 2.0940 3.5887 1.2768 15 7 3.5432 3.6029 1.0359 16 6 4.3720 4.2581 1.8729 17 8 5.5666 4.2620 1.6634 18 6 3.8144 4.9858 3.0689 19 7 4.9095 5.6122 3.8136 20 6 5.5595 4.9910 4.8056 21 8 5.3305 3.8678 5.1999 22 6 6.6276 5.9120 5.3541 23 6 6.4738 7.1901 4.5049 24 6 5.3389 6.8550 3.5619 25 8 4.8900 7.5946 2.7127 26 6 4.0718 2.8894 -0.1346 27 6 3.5671 1.4433 -0.0999 28 1 -0.3634 0.4241 0.9361 29 1 -0.3634 0.5988 -0.8352 30 1 -0.3634 -1.0226 -0.1009 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.8991 2.9261 -1.0027 34 1 -0.0741 3.8254 -4.0655 35 1 0.5247 2.1133 1.3775 36 1 2.0512 1.6167 2.1478 37 1 1.5857 4.1321 0.4802 38 1 1.8784 4.0578 2.2369 39 1 3.1170 5.7537 2.7343 40 1 3.2937 4.2784 3.7143 41 1 7.6186 5.4786 5.2194 42 1 6.4438 6.1265 6.4069 43 1 7.3885 7.3927 3.9477 44 1 6.2110 8.0399 5.1348 45 1 5.1614 2.8969 -0.1057 46 1 3.7249 3.3757 -1.0463 47 1 3.9885 0.9316 0.7654 48 1 3.8724 0.9295 -1.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733809760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:49 Heat of formation + Delta-G solvation = -103.399765 kcal Electronic energy + Delta-G solvation = -30917.741423 eV Core-core repulsion = 26779.492460 eV Total energy + Delta-G solvation = -4138.248963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.99216 -41.27244 -39.66643 -39.44639 -36.93201 -36.31586 -34.53344 -34.40887 -32.43587 -31.54954 -30.92116 -29.04852 -27.11026 -26.35693 -25.57638 -24.28429 -23.33028 -23.04879 -21.40083 -20.35552 -19.65779 -18.96038 -18.78619 -18.31401 -17.55870 -17.55119 -16.70935 -16.66076 -16.29969 -15.76129 -15.69713 -15.41241 -15.37533 -15.28640 -14.94810 -14.84756 -14.77254 -14.40336 -14.32475 -13.98843 -13.59433 -13.47097 -13.33567 -13.08189 -12.92990 -12.82128 -12.58978 -12.33976 -12.22518 -12.12192 -12.09630 -11.84266 -11.73927 -11.63892 -11.48228 -11.44912 -11.12244 -11.01233 -10.79370 -10.61044 -9.70997 -8.85674 -7.86003 -5.09506 0.50236 1.24907 1.39660 1.47103 1.48015 1.52625 1.70259 2.07318 2.60101 3.20993 3.25993 3.31541 3.48456 3.64561 3.77388 3.85261 3.94053 4.01502 4.05066 4.13667 4.19351 4.21568 4.26173 4.44452 4.53472 4.59175 4.65364 4.75173 4.76656 4.79878 4.84432 4.91600 4.92998 5.03641 5.10431 5.12408 5.27067 5.33641 5.36675 5.50695 5.61803 5.65014 5.75429 5.75621 6.29423 6.32196 6.37149 6.69036 6.94952 7.45242 8.21515 8.45324 9.37029 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.003127 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.107218 B = 8951.007567 C = 9738.965329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.195 3.805 4 N -0.714 5.714 5 C -0.207 4.207 6 H 0.068 0.932 7 C -0.070 4.070 8 N -0.965 5.965 9 Si 0.949 3.051 10 H -0.283 1.283 11 H -0.302 1.302 12 H -0.287 1.287 13 C -0.125 4.125 14 C 0.107 3.893 15 N -0.593 5.593 16 C 0.495 3.505 17 O -0.584 6.584 18 C 0.079 3.921 19 N -0.567 5.567 20 C 0.522 3.478 21 O -0.521 6.521 22 C -0.139 4.139 23 C -0.139 4.139 24 C 0.519 3.481 25 O -0.525 6.525 26 C 0.131 3.869 27 C -0.125 4.125 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.374 0.626 34 H 0.245 0.755 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.158 0.842 43 H 0.137 0.863 44 H 0.157 0.843 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 4.818 22.954 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C 0.105 3.895 4 N -0.354 5.354 5 C -0.339 4.339 6 H 0.086 0.914 7 C -0.263 4.263 8 N -0.617 5.617 9 Si 0.781 3.219 10 H -0.210 1.210 11 H -0.229 1.229 12 H -0.214 1.214 13 C -0.163 4.163 14 C -0.015 4.015 15 N -0.325 5.325 16 C 0.283 3.717 17 O -0.465 6.465 18 C -0.046 4.046 19 N -0.309 5.309 20 C 0.314 3.686 21 O -0.395 6.395 22 C -0.177 4.177 23 C -0.178 4.178 24 C 0.311 3.689 25 O -0.400 6.400 26 C 0.008 3.992 27 C -0.165 4.165 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.208 0.792 34 H 0.054 0.946 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.176 0.824 43 H 0.155 0.845 44 H 0.175 0.825 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.986 4.505 22.446 24.594 hybrid contribution -0.392 -0.258 -2.201 2.250 sum 8.594 4.247 20.246 22.400 Atomic orbital electron populations 1.21573 0.95706 1.00386 1.01475 1.21845 0.96595 0.97157 1.00309 1.19813 0.90524 0.91795 0.87396 1.42523 1.57687 1.34717 1.00500 1.19266 1.18706 1.11481 0.84448 0.91378 1.25214 1.00946 0.99809 1.00289 1.69753 1.35573 1.26610 1.29797 0.85562 0.77006 0.77219 0.82102 1.20978 1.22888 1.21394 1.22099 1.02421 0.94596 0.97214 1.21949 0.78226 0.98513 1.02850 1.48111 1.08319 1.50477 1.25580 1.21266 0.86516 0.79178 0.84719 1.90638 1.16912 1.63481 1.75481 1.21688 0.90104 1.00252 0.92567 1.46655 1.33823 1.17125 1.33290 1.21796 0.82472 0.86801 0.77509 1.90758 1.67698 1.19282 1.61718 1.22593 0.98842 0.92492 1.03815 1.22596 0.97137 1.00821 0.97224 1.21877 0.84136 0.79409 0.83460 1.90780 1.61052 1.53381 1.34749 1.21284 0.97808 0.93032 0.87084 1.22201 0.98391 0.94748 1.01170 0.91968 0.94305 0.93509 0.94392 0.91280 0.79220 0.94594 0.89053 0.89453 0.91937 0.86798 0.84774 0.83800 0.84374 0.82449 0.84538 0.82534 0.91688 0.92840 0.91582 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.39 71.98 0.68 -3.64 16 2 C -0.12 -3.90 4.78 30.59 0.15 -3.75 16 3 C 0.19 6.71 0.43 3.63 0.00 6.71 16 4 N -0.71 -31.53 3.07 -303.22 -0.93 -32.46 16 5 C -0.21 -10.57 8.72 84.03 0.73 -9.84 16 6 H 0.07 3.46 6.74 -2.91 -0.02 3.44 16 7 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 8 N -0.97 -56.83 13.06 21.65 0.28 -56.55 16 9 Si 0.95 46.02 29.55 68.60 2.03 48.05 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 C -0.13 -3.37 4.72 30.67 0.14 -3.22 16 14 C 0.11 2.89 6.07 86.36 0.52 3.42 16 15 N -0.59 -19.28 2.97 -818.90 -2.43 -21.72 16 16 C 0.50 16.16 7.77 87.66 0.68 16.84 16 17 O -0.58 -23.25 15.84 -3.04 -0.05 -23.29 16 18 C 0.08 1.85 4.38 85.63 0.38 2.23 16 19 N -0.57 -12.41 2.04 -760.73 -1.55 -13.96 16 20 C 0.52 10.14 8.08 87.99 0.71 10.85 16 21 O -0.52 -13.89 17.47 -2.85 -0.05 -13.94 16 22 C -0.14 -0.96 7.03 30.46 0.21 -0.74 16 23 C -0.14 -1.05 7.03 30.46 0.21 -0.83 16 24 C 0.52 10.78 8.08 87.99 0.71 11.49 16 25 O -0.53 -15.52 17.48 -2.87 -0.05 -15.57 16 26 C 0.13 4.94 6.18 86.37 0.53 5.47 16 27 C -0.13 -4.38 4.67 30.67 0.14 -4.24 16 28 H 0.06 1.69 6.79 -2.38 -0.02 1.68 16 29 H 0.04 1.56 7.31 -2.39 -0.02 1.54 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.39 7.60 -2.39 -0.02 1.37 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.37 17.96 6.54 -92.71 -0.61 17.36 16 34 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.09 2.30 6.60 -2.39 -0.02 2.29 16 36 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.02 6.98 -2.38 -0.02 2.01 16 38 H 0.11 2.12 5.93 -2.39 -0.01 2.11 16 39 H 0.13 2.81 7.63 -2.39 -0.02 2.80 16 40 H 0.14 2.69 7.37 -2.39 -0.02 2.68 16 41 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.16 0.01 8.14 -2.38 -0.02 -0.01 16 43 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.06 2.57 7.01 -2.39 -0.02 2.55 16 46 H 0.05 2.39 7.72 -2.39 -0.02 2.37 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.06 2.23 7.14 -2.39 -0.02 2.21 16 Total: -1.00 -79.27 380.41 3.90 -75.37 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.38 Total: 26.76 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: 6.27 Total: 27.33 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -4.63 Total: -124.69 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.15 Total: -52.81 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -79.27 3.90 -75.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733809760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.034 kcal (2) G-P(sol) polarization free energy of solvation -79.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds