Wall clock time and date at job start Tue Mar 31 2020 19:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34255 * 126.52251 * 2 1 4 4 C 1.34055 * 108.22869 * 179.83706 * 3 2 1 5 5 N 1.29940 * 109.23934 * 0.42917 * 4 3 2 6 6 C 1.36061 * 108.47646 * 359.73741 * 5 4 3 7 7 C 1.47427 * 126.44958 * 179.97438 * 6 5 4 8 8 O 1.21607 * 120.00156 * 174.05982 * 7 6 5 9 9 N 1.34773 * 119.99503 * 354.06254 * 7 6 5 10 10 C 1.46931 * 120.63476 * 4.48325 * 9 7 6 11 11 C 1.52757 * 109.00675 * 233.58723 * 10 9 7 12 12 C 1.53045 * 109.38422 * 305.58137 * 11 10 9 13 13 O 1.42902 * 109.44924 * 181.25270 * 12 11 10 14 14 C 1.42901 * 113.99381 * 89.94356 * 13 12 11 15 15 C 1.53001 * 109.47048 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47253 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47250 * 179.97438 * 16 15 14 18 18 C 1.36942 * 120.00163 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99975 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99952 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99964 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00076 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46809 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47222 * 119.99513 * 22 20 18 25 25 H 1.48496 * 109.46805 * 239.99514 * 22 20 18 26 26 C 1.53043 * 109.53425 * 61.24512 * 12 11 10 27 27 C 1.46925 * 120.62977 * 184.76315 * 9 7 6 28 28 H 1.09000 * 109.47153 * 269.68943 * 1 2 3 29 29 H 1.08994 * 109.47080 * 29.69465 * 1 2 3 30 30 H 1.09004 * 109.46770 * 149.69823 * 1 2 3 31 31 H 1.07997 * 125.38048 * 180.16750 * 4 3 2 32 32 H 1.09001 * 109.58196 * 353.42171 * 10 9 7 33 33 H 1.08999 * 109.58590 * 113.84615 * 10 9 7 34 34 H 1.09007 * 109.56116 * 185.55097 * 11 10 9 35 35 H 1.08997 * 109.36189 * 65.49702 * 11 10 9 36 36 H 1.08997 * 109.46166 * 301.22733 * 12 11 10 37 37 H 1.09005 * 109.47486 * 299.99991 * 14 13 12 38 38 H 1.09000 * 109.47528 * 59.99901 * 14 13 12 39 39 H 1.09005 * 109.46870 * 300.00247 * 15 14 13 40 40 H 1.09000 * 109.47137 * 59.99539 * 15 14 13 41 41 H 1.08998 * 109.47690 * 300.00026 * 16 15 14 42 42 H 1.09007 * 109.47496 * 60.00099 * 16 15 14 43 43 H 0.97001 * 119.99748 * 359.97438 * 17 16 15 44 44 H 0.96998 * 119.99759 * 180.02562 * 21 20 18 45 45 H 1.08994 * 109.49846 * 178.68294 * 26 12 11 46 46 H 1.09003 * 109.49565 * 58.58602 * 26 12 11 47 47 H 1.08998 * 109.59329 * 246.15532 * 27 9 7 48 48 H 1.09000 * 109.58722 * 6.43746 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 0.0036 5 7 3.6003 -0.6411 -0.0033 6 6 2.3171 -1.0935 -0.0058 7 6 1.8854 -2.5032 -0.0139 8 8 0.7058 -2.7785 0.0936 9 7 2.7982 -3.4866 -0.1404 10 6 4.2339 -3.1760 -0.1727 11 6 4.8503 -3.8014 -1.4227 12 6 4.5299 -5.2977 -1.4527 13 8 5.1304 -5.8898 -2.6063 14 6 6.4565 -6.3749 -2.3868 15 6 6.9978 -6.9837 -3.6819 16 6 8.4173 -7.5036 -3.4467 17 7 8.9354 -8.0872 -4.6866 18 6 10.1961 -8.6208 -4.7178 19 1 10.8087 -8.6111 -3.8284 20 6 10.6871 -9.1732 -5.8928 21 7 9.9407 -9.1846 -6.9769 22 14 12.4067 -9.9018 -5.9351 23 1 13.0347 -9.7662 -4.5964 24 1 12.3266 -11.3386 -6.3016 25 1 13.2257 -9.1793 -6.9412 26 6 3.0133 -5.4952 -1.5094 27 6 2.3763 -4.8893 -0.2548 28 1 -0.3633 -0.0056 1.0276 29 1 -0.3633 0.8927 -0.5091 30 1 -0.3633 -0.8873 -0.5185 31 1 4.4489 1.2979 0.0071 32 1 4.3733 -2.0952 -0.1998 33 1 4.7167 -3.5866 0.7141 34 1 5.9311 -3.6611 -1.4059 35 1 4.4344 -3.3224 -2.3090 36 1 4.9244 -5.7717 -0.5540 37 1 7.0986 -5.5501 -2.0774 38 1 6.4407 -7.1354 -1.6062 39 1 6.3558 -7.8084 -3.9917 40 1 7.0137 -6.2228 -4.4622 41 1 9.0596 -6.6793 -3.1367 42 1 8.4010 -8.2647 -2.6665 43 1 8.3850 -8.0962 -5.4853 44 1 10.2836 -9.5709 -7.7978 45 1 2.7866 -6.5603 -1.5544 46 1 2.6148 -5.0002 -2.3950 47 1 2.7044 -5.4426 0.6251 48 1 1.2903 -4.9390 -0.3335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734082652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:03 Heat of formation + Delta-G solvation = -40.347791 kcal Electronic energy + Delta-G solvation = -28538.872666 eV Core-core repulsion = 24403.357842 eV Total energy + Delta-G solvation = -4135.514824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.01367 -40.42070 -38.65694 -36.76236 -35.53294 -35.06280 -32.93241 -32.71618 -31.73033 -31.33712 -29.54333 -28.01975 -25.78029 -24.86705 -23.94428 -23.58213 -22.55377 -22.26982 -21.22065 -20.74676 -19.78344 -18.06994 -17.43875 -17.17182 -16.98818 -16.50913 -16.23283 -15.69948 -15.44051 -15.28863 -14.83284 -14.60328 -14.34958 -14.24732 -13.87113 -13.79458 -13.56317 -13.44763 -13.22722 -13.16408 -12.80942 -12.71404 -12.41806 -12.24685 -11.93804 -11.66229 -11.43231 -11.25684 -10.92266 -10.87248 -10.76162 -10.66435 -10.54991 -10.53809 -10.08912 -10.00108 -9.69543 -9.49895 -9.32871 -8.96450 -8.85977 -6.90337 -5.74347 -3.03443 0.59893 1.49050 2.02522 2.56901 2.85892 3.44837 3.44916 3.49634 3.52578 3.63732 4.08383 4.15795 4.53261 4.61988 4.64917 4.68834 4.80336 4.87768 4.92065 4.96552 5.03525 5.16464 5.21088 5.28958 5.31121 5.32262 5.40283 5.47185 5.52914 5.58839 5.63190 5.65347 5.71063 5.90798 5.99120 6.03091 6.08780 6.13939 6.30926 6.39685 6.39877 6.83359 6.86143 6.89959 7.07758 7.33754 7.71960 7.73287 8.44471 9.55386 10.13696 10.48542 11.48696 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.001653 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.849500 B =16937.149298 C =17592.367195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.047 3.953 3 O -0.197 6.197 4 C 0.181 3.819 5 N -0.461 5.461 6 C -0.075 4.075 7 C 0.603 3.397 8 O -0.539 6.539 9 N -0.593 5.593 10 C 0.063 3.937 11 C -0.153 4.153 12 C 0.089 3.911 13 O -0.381 6.381 14 C 0.068 3.932 15 C -0.124 4.124 16 C 0.157 3.843 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.131 4.131 27 C 0.114 3.886 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.257 0.743 32 H 0.157 0.843 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 22.243 18.934 35.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.009 4.009 3 O -0.083 6.083 4 C -0.046 4.046 5 N -0.190 5.190 6 C -0.194 4.194 7 C 0.391 3.609 8 O -0.417 6.417 9 N -0.324 5.324 10 C -0.059 4.059 11 C -0.191 4.191 12 C 0.030 3.970 13 O -0.300 6.300 14 C -0.009 4.009 15 C -0.162 4.162 16 C 0.029 3.971 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.169 4.169 27 C -0.008 4.008 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.273 0.727 32 H 0.173 0.827 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.155 21.665 18.871 35.096 hybrid contribution 0.868 -0.045 -0.178 0.887 sum -19.287 21.621 18.693 34.480 Atomic orbital electron populations 1.20605 0.82431 1.05432 1.04869 1.23759 0.95284 0.83170 0.98695 1.84402 1.18511 1.36192 1.69229 1.28247 0.85340 0.91440 0.99582 1.70213 1.21061 1.09517 1.18214 1.21431 0.88719 0.95497 1.13795 1.16744 0.85046 0.82571 0.76536 1.90778 1.16478 1.82959 1.51466 1.47911 1.07415 1.06349 1.70739 1.22941 0.78254 1.07573 0.97167 1.22322 1.01656 0.96185 0.98946 1.22043 0.93203 0.92594 0.89114 1.87939 1.29635 1.77982 1.34456 1.22519 0.82726 0.97031 0.98578 1.21667 0.97437 1.00906 0.96218 1.20513 0.90678 0.95241 0.90677 1.42354 1.16163 1.70929 1.08311 1.19292 0.91257 1.30531 0.96023 0.91077 1.24770 0.98563 1.01957 0.95855 1.69684 1.36577 1.51012 1.00896 0.86090 0.84105 0.78584 0.77260 1.20552 1.21840 1.21853 1.21979 0.94191 1.02237 0.98468 1.21669 1.01441 0.80058 0.97623 0.88765 0.89947 0.87061 0.72723 0.82713 0.91885 0.90318 0.90957 0.92183 0.93465 0.93433 0.91214 0.91223 0.96340 0.96347 0.78184 0.93546 0.89672 0.90625 0.91028 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 9.82 36.01 0.35 -0.07 16 2 C 0.05 0.37 7.44 -35.08 -0.26 0.11 16 3 O -0.20 -1.27 10.73 6.50 0.07 -1.20 16 4 C 0.18 0.92 13.19 51.96 0.69 1.60 16 5 N -0.46 -3.74 7.67 -11.48 -0.09 -3.83 16 6 C -0.08 -0.72 6.75 -83.02 -0.56 -1.28 16 7 C 0.60 6.71 7.69 -12.52 -0.10 6.61 16 8 O -0.54 -6.79 14.31 5.27 0.08 -6.71 16 9 N -0.59 -6.04 2.98 -174.30 -0.52 -6.56 16 10 C 0.06 0.58 6.30 -3.93 -0.02 0.56 16 11 C -0.15 -1.56 5.68 -26.83 -0.15 -1.71 16 12 C 0.09 0.98 2.57 -26.69 -0.07 0.91 16 13 O -0.38 -5.44 9.99 -35.23 -0.35 -5.79 16 14 C 0.07 0.97 5.75 37.16 0.21 1.19 16 15 C -0.12 -2.18 5.70 -26.73 -0.15 -2.33 16 16 C 0.16 3.27 6.26 -4.04 -0.03 3.24 16 17 N -0.73 -19.41 5.60 -59.91 -0.34 -19.75 16 18 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 22 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C -0.13 -1.30 5.73 -26.61 -0.15 -1.46 16 27 C 0.11 1.05 6.42 -3.71 -0.02 1.03 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.75 6.62 -51.93 -0.34 0.41 16 31 H 0.26 -0.02 8.06 -52.49 -0.42 -0.44 16 32 H 0.16 1.43 3.62 -80.49 -0.29 1.14 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 37 H 0.05 0.62 7.84 -51.93 -0.41 0.22 16 38 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.38 10.69 7.67 -40.82 -0.31 10.37 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.10 0.94 7.03 -51.93 -0.37 0.57 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -35.35 390.24 -7.65 -43.00 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.57 Total: 4.63 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.51 Total: 0.77 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.22 Total: -58.31 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.21 Total: -13.70 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.35 -7.65 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734082652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.655 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds