Wall clock time and date at job start Tue Mar 31 2020 19:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34255 * 126.52251 * 2 1 4 4 C 1.34055 * 108.22869 * 179.83706 * 3 2 1 5 5 N 1.29940 * 109.23934 * 0.42917 * 4 3 2 6 6 C 1.36061 * 108.47646 * 359.73741 * 5 4 3 7 7 C 1.47427 * 126.44958 * 179.97438 * 6 5 4 8 8 O 1.21607 * 120.00156 * 174.05982 * 7 6 5 9 9 N 1.34773 * 119.99503 * 354.06254 * 7 6 5 10 10 C 1.46931 * 120.63476 * 4.48325 * 9 7 6 11 11 C 1.52757 * 109.00675 * 233.58723 * 10 9 7 12 12 C 1.53045 * 109.38422 * 305.58137 * 11 10 9 13 13 O 1.42902 * 109.44924 * 181.25270 * 12 11 10 14 14 C 1.42901 * 113.99381 * 89.94356 * 13 12 11 15 15 C 1.53001 * 109.47048 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47253 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47250 * 179.97438 * 16 15 14 18 18 C 1.36942 * 120.00163 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99975 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99952 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99964 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00076 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46809 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47222 * 119.99513 * 22 20 18 25 25 H 1.48496 * 109.46805 * 239.99514 * 22 20 18 26 26 C 1.53043 * 109.53425 * 61.24512 * 12 11 10 27 27 C 1.46925 * 120.62977 * 184.76315 * 9 7 6 28 28 H 1.09000 * 109.47153 * 269.68943 * 1 2 3 29 29 H 1.08994 * 109.47080 * 29.69465 * 1 2 3 30 30 H 1.09004 * 109.46770 * 149.69823 * 1 2 3 31 31 H 1.07997 * 125.38048 * 180.16750 * 4 3 2 32 32 H 1.09001 * 109.58196 * 353.42171 * 10 9 7 33 33 H 1.08999 * 109.58590 * 113.84615 * 10 9 7 34 34 H 1.09007 * 109.56116 * 185.55097 * 11 10 9 35 35 H 1.08997 * 109.36189 * 65.49702 * 11 10 9 36 36 H 1.08997 * 109.46166 * 301.22733 * 12 11 10 37 37 H 1.09005 * 109.47486 * 299.99991 * 14 13 12 38 38 H 1.09000 * 109.47528 * 59.99901 * 14 13 12 39 39 H 1.09005 * 109.46870 * 300.00247 * 15 14 13 40 40 H 1.09000 * 109.47137 * 59.99539 * 15 14 13 41 41 H 1.08998 * 109.47690 * 300.00026 * 16 15 14 42 42 H 1.09007 * 109.47496 * 60.00099 * 16 15 14 43 43 H 0.97001 * 119.99748 * 359.97438 * 17 16 15 44 44 H 0.96998 * 119.99759 * 180.02562 * 21 20 18 45 45 H 1.08994 * 109.49846 * 178.68294 * 26 12 11 46 46 H 1.09003 * 109.49565 * 58.58602 * 26 12 11 47 47 H 1.08998 * 109.59329 * 246.15532 * 27 9 7 48 48 H 1.09000 * 109.58722 * 6.43746 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 0.0036 5 7 3.6003 -0.6411 -0.0033 6 6 2.3171 -1.0935 -0.0058 7 6 1.8854 -2.5032 -0.0139 8 8 0.7058 -2.7785 0.0936 9 7 2.7982 -3.4866 -0.1404 10 6 4.2339 -3.1760 -0.1727 11 6 4.8503 -3.8014 -1.4227 12 6 4.5299 -5.2977 -1.4527 13 8 5.1304 -5.8898 -2.6063 14 6 6.4565 -6.3749 -2.3868 15 6 6.9978 -6.9837 -3.6819 16 6 8.4173 -7.5036 -3.4467 17 7 8.9354 -8.0872 -4.6866 18 6 10.1961 -8.6208 -4.7178 19 1 10.8087 -8.6111 -3.8284 20 6 10.6871 -9.1732 -5.8928 21 7 9.9407 -9.1846 -6.9769 22 14 12.4067 -9.9018 -5.9351 23 1 13.0347 -9.7662 -4.5964 24 1 12.3266 -11.3386 -6.3016 25 1 13.2257 -9.1793 -6.9412 26 6 3.0133 -5.4952 -1.5094 27 6 2.3763 -4.8893 -0.2548 28 1 -0.3633 -0.0056 1.0276 29 1 -0.3633 0.8927 -0.5091 30 1 -0.3633 -0.8873 -0.5185 31 1 4.4489 1.2979 0.0071 32 1 4.3733 -2.0952 -0.1998 33 1 4.7167 -3.5866 0.7141 34 1 5.9311 -3.6611 -1.4059 35 1 4.4344 -3.3224 -2.3090 36 1 4.9244 -5.7717 -0.5540 37 1 7.0986 -5.5501 -2.0774 38 1 6.4407 -7.1354 -1.6062 39 1 6.3558 -7.8084 -3.9917 40 1 7.0137 -6.2228 -4.4622 41 1 9.0596 -6.6793 -3.1367 42 1 8.4010 -8.2647 -2.6665 43 1 8.3850 -8.0962 -5.4853 44 1 10.2836 -9.5709 -7.7978 45 1 2.7866 -6.5603 -1.5544 46 1 2.6148 -5.0002 -2.3950 47 1 2.7044 -5.4426 0.6251 48 1 1.2903 -4.9390 -0.3335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734082652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:02 Heat of formation + Delta-G solvation = -65.463551 kcal Electronic energy + Delta-G solvation = -28539.961767 eV Core-core repulsion = 24403.357842 eV Total energy + Delta-G solvation = -4136.603925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.52017 -41.21561 -39.61990 -37.78279 -36.84057 -36.04491 -34.29618 -33.42638 -32.97768 -32.14658 -31.27684 -28.58357 -27.07338 -26.06314 -24.70065 -24.50009 -23.96371 -22.99410 -22.47483 -21.74386 -20.50860 -19.15482 -18.74456 -17.97781 -17.92773 -17.45544 -16.98419 -16.76367 -16.59406 -16.25386 -15.85066 -15.62777 -15.40542 -15.26546 -15.25863 -14.85793 -14.64679 -14.42891 -14.27246 -13.99126 -13.79699 -13.53736 -13.37802 -13.14374 -12.93148 -12.88619 -12.57773 -12.49837 -12.42057 -12.30240 -12.11027 -12.03144 -11.95424 -11.74612 -11.51311 -11.45741 -10.97071 -10.88902 -10.25883 -10.10233 -9.69504 -9.03623 -7.96781 -5.27196 0.01600 0.98012 1.47476 1.49134 1.54188 1.59427 1.89178 2.13203 2.49927 2.65183 2.98247 3.36972 3.53041 3.61246 3.73921 3.85261 3.93703 4.03248 4.08553 4.12712 4.21825 4.27734 4.28903 4.33138 4.35994 4.46397 4.57262 4.59067 4.64903 4.70272 4.74490 4.79480 4.80515 4.83374 4.86002 4.91230 5.08081 5.09328 5.21523 5.30653 5.32112 5.34198 5.48216 5.73625 6.17308 6.24632 6.31894 6.46038 6.95817 7.30881 8.05899 8.29185 9.27317 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.001653 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.849500 B =16937.149298 C =17592.367195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.047 3.953 3 O -0.197 6.197 4 C 0.202 3.798 5 N -0.488 5.488 6 C -0.105 4.105 7 C 0.595 3.405 8 O -0.564 6.564 9 N -0.596 5.596 10 C 0.066 3.934 11 C -0.145 4.145 12 C 0.085 3.915 13 O -0.401 6.401 14 C 0.077 3.923 15 C -0.113 4.113 16 C 0.156 3.844 17 N -0.750 5.750 18 C -0.249 4.249 19 H 0.080 0.920 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.263 1.263 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.124 4.124 27 C 0.117 3.883 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.304 0.696 32 H 0.161 0.839 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.206 23.495 20.792 36.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.010 4.010 3 O -0.084 6.084 4 C -0.026 4.026 5 N -0.217 5.217 6 C -0.223 4.223 7 C 0.384 3.616 8 O -0.444 6.444 9 N -0.327 5.327 10 C -0.056 4.056 11 C -0.184 4.184 12 C 0.027 3.973 13 O -0.321 6.321 14 C 0.000 4.000 15 C -0.151 4.151 16 C 0.029 3.971 17 N -0.393 5.393 18 C -0.381 4.381 19 H 0.098 0.902 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.163 4.163 27 C -0.005 4.005 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.319 0.681 32 H 0.177 0.823 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.204 0.796 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.107 0.893 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.209 22.922 20.778 36.416 hybrid contribution 0.539 -0.337 -0.716 0.958 sum -18.669 22.585 20.061 35.512 Atomic orbital electron populations 1.20644 0.81335 1.05660 1.05540 1.24058 0.96113 0.83079 0.97714 1.84438 1.19005 1.35646 1.69262 1.29332 0.85839 0.91079 0.96307 1.70090 1.20469 1.11078 1.20028 1.21350 0.89913 0.95073 1.15965 1.17062 0.84877 0.83502 0.76153 1.90749 1.17373 1.83550 1.52745 1.48031 1.07759 1.06536 1.70379 1.22990 0.77664 1.07973 0.96950 1.22249 1.01937 0.95510 0.98700 1.22239 0.93441 0.92973 0.88648 1.87906 1.29558 1.78383 1.36261 1.22357 0.83115 0.97815 0.96691 1.21479 0.95506 1.00254 0.97883 1.20664 0.92436 0.95334 0.88627 1.42618 1.15664 1.71294 1.09727 1.19736 0.92231 1.29803 0.96283 0.90222 1.25679 1.02777 1.03061 0.95609 1.69849 1.38549 1.52412 1.01425 0.84985 0.79192 0.77231 0.77799 1.18749 1.21931 1.21913 1.21923 0.93653 1.02530 0.98167 1.21679 1.01062 0.79969 0.97830 0.87765 0.87781 0.88695 0.68117 0.82341 0.90728 0.89706 0.92785 0.90552 0.92031 0.91930 0.92301 0.92378 0.95476 0.95512 0.79557 0.93932 0.88982 0.92351 0.89277 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.82 71.24 0.70 -0.09 16 2 C 0.05 0.70 7.44 25.19 0.19 0.89 16 3 O -0.20 -2.17 10.73 0.35 0.00 -2.16 16 4 C 0.20 1.54 13.19 130.52 1.72 3.27 16 5 N -0.49 -7.28 7.67 -305.14 -2.34 -9.62 16 6 C -0.11 -1.97 6.75 40.41 0.27 -1.70 16 7 C 0.60 13.42 7.69 86.66 0.67 14.09 16 8 O -0.56 -14.69 14.31 -4.05 -0.06 -14.75 16 9 N -0.60 -11.96 2.98 -823.61 -2.45 -14.41 16 10 C 0.07 1.15 6.30 86.22 0.54 1.70 16 11 C -0.15 -2.83 5.68 30.53 0.17 -2.66 16 12 C 0.08 1.76 2.57 30.62 0.08 1.84 16 13 O -0.40 -11.04 9.99 -148.98 -1.49 -12.52 16 14 C 0.08 2.05 5.75 71.98 0.41 2.47 16 15 C -0.11 -3.90 5.70 30.59 0.17 -3.73 16 16 C 0.16 6.35 6.26 86.38 0.54 6.89 16 17 N -0.75 -39.81 5.60 -343.45 -1.92 -41.73 16 18 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 21 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 22 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 C -0.12 -2.44 5.73 30.67 0.18 -2.26 16 27 C 0.12 2.09 6.42 86.36 0.55 2.65 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 1.34 6.62 -2.38 -0.02 1.33 16 31 H 0.30 -1.25 8.06 -2.91 -0.02 -1.27 16 32 H 0.16 2.77 3.62 -58.78 -0.21 2.56 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.54 7.84 -2.38 -0.02 1.52 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.37 7.79 -2.39 -0.02 1.35 16 37 H 0.06 1.47 7.84 -2.38 -0.02 1.46 16 38 H 0.06 1.49 8.08 -2.39 -0.02 1.48 16 39 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.37 21.15 7.67 -92.71 -0.71 20.43 16 44 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.09 1.79 7.03 -2.39 -0.02 1.77 16 Total: -1.00 -76.72 390.24 1.62 -75.10 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.06 Total: 26.41 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 7.51 Total: 5.73 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -6.43 Total: -126.46 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.54 Total: -29.43 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -76.72 1.62 -75.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734082652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.634 kcal (2) G-P(sol) polarization free energy of solvation -76.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds