Wall clock time and date at job start Tue Mar 31 2020 19:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34323 * 126.44156 * 2 1 4 4 N 1.34479 * 107.66518 * 179.76902 * 3 2 1 5 5 C 1.30261 * 108.70266 * 0.42460 * 4 3 2 6 6 C 1.50694 * 125.61949 * 179.84154 * 5 4 3 7 7 O 1.42898 * 109.47364 * 89.69448 * 6 5 4 8 8 C 1.42906 * 113.99828 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46702 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47234 * 275.00436 * 12 11 9 14 14 C 1.52992 * 109.47146 * 299.99812 * 13 12 11 15 15 C 1.53002 * 109.47376 * 299.99886 * 14 13 12 16 16 N 1.46496 * 109.47354 * 180.02562 * 15 14 13 17 17 C 1.36933 * 120.00336 * 85.00500 * 16 15 14 18 18 H 1.08010 * 119.99792 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00135 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00254 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47087 * 89.99584 * 21 19 17 23 23 H 1.48500 * 109.47024 * 209.99988 * 21 19 17 24 24 H 1.48504 * 109.46790 * 329.99801 * 21 19 17 25 25 C 1.52998 * 109.46890 * 59.99957 * 15 14 13 26 26 C 1.52998 * 109.47246 * 155.00083 * 12 11 9 27 27 O 1.33970 * 108.75531 * 359.57055 * 5 4 3 28 28 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46611 * 299.99926 * 1 2 3 30 30 H 1.08999 * 109.46976 * 59.99878 * 1 2 3 31 31 H 1.07998 * 126.17344 * 0.02800 * 3 2 1 32 32 H 1.09000 * 109.47609 * 329.68923 * 6 5 4 33 33 H 1.09002 * 109.47072 * 209.69438 * 6 5 4 34 34 H 1.09000 * 109.46890 * 59.99811 * 8 7 6 35 35 H 1.09000 * 109.47141 * 299.99454 * 8 7 6 36 36 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.46776 * 35.00022 * 12 11 9 38 38 H 1.09001 * 109.47093 * 59.99825 * 13 12 11 39 39 H 1.09002 * 109.47121 * 179.97438 * 13 12 11 40 40 H 1.09007 * 109.47184 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47274 * 59.99894 * 14 13 12 42 42 H 1.09002 * 109.46925 * 300.00221 * 15 14 13 43 43 H 0.97003 * 119.99620 * 264.99296 * 16 15 14 44 44 H 0.96995 * 120.00291 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.47657 * 180.02562 * 25 15 14 46 46 H 1.09002 * 109.47080 * 59.99828 * 25 15 14 47 47 H 1.09002 * 109.46987 * 180.02562 * 26 12 11 48 48 H 1.08997 * 109.47162 * 300.00499 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5765 -0.6549 -0.0009 6 6 4.8004 -1.5341 -0.0014 7 8 5.1877 -1.8124 1.3456 8 6 6.3444 -2.6440 1.4578 9 6 6.6607 -2.8706 2.9138 10 8 5.9646 -2.3689 3.7708 11 7 7.7173 -3.6308 3.2634 12 6 8.0253 -3.8507 4.6786 13 6 8.8734 -2.6900 5.2023 14 6 10.1758 -2.6090 4.4037 15 6 10.9518 -3.9185 4.5593 16 7 12.1992 -3.8407 3.7951 17 6 13.3104 -3.2687 4.3545 18 1 13.2671 -2.8743 5.3591 19 6 14.4925 -3.1955 3.6305 20 7 14.5454 -3.6765 2.4065 21 14 16.0082 -2.4145 4.3934 22 1 16.7972 -3.4539 5.1021 23 1 16.8404 -1.8032 3.3261 24 1 15.5919 -1.3653 5.3584 25 6 10.1037 -5.0792 4.0356 26 6 8.8011 -5.1601 4.8343 27 8 2.3074 -1.0840 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9823 2.1112 0.0004 32 1 5.6146 -1.0232 -0.5154 33 1 4.5761 -2.4687 -0.5155 34 1 7.1907 -2.1565 0.9740 35 1 6.1516 -3.6017 0.9742 36 1 8.2743 -4.0317 2.5779 37 1 7.0973 -3.9083 5.2476 38 1 8.3206 -1.7571 5.0914 39 1 9.1021 -2.8533 6.2555 40 1 10.7803 -1.7823 4.7771 41 1 9.9467 -2.4455 3.3506 42 1 11.1809 -4.0820 5.6124 43 1 12.2379 -4.1947 2.8928 44 1 15.3715 -3.6257 1.9007 45 1 10.6562 -6.0121 4.1469 46 1 9.8745 -4.9155 2.9826 47 1 9.0298 -5.3239 5.8874 48 1 8.1969 -5.9870 4.4612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752851194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:53 Heat of formation + Delta-G solvation = -52.501002 kcal Electronic energy + Delta-G solvation = -28566.641486 eV Core-core repulsion = 24430.599660 eV Total energy + Delta-G solvation = -4136.041827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.66137 -40.19627 -38.54747 -37.44320 -35.06215 -34.65161 -33.14569 -32.80667 -30.95910 -30.45273 -29.92720 -28.17790 -26.94922 -25.45123 -23.66322 -22.66055 -22.24875 -21.48316 -21.31807 -20.80543 -18.89786 -17.97119 -17.56887 -17.13228 -16.98120 -16.57059 -16.48623 -15.44321 -15.31586 -15.11445 -14.98446 -14.57298 -14.09392 -14.00501 -13.66434 -13.56390 -13.56229 -13.42324 -13.17129 -12.81895 -12.50752 -12.38359 -12.30826 -12.19921 -11.87515 -11.63558 -11.63292 -11.02441 -10.87989 -10.85255 -10.82238 -10.41207 -10.21694 -10.18356 -10.13668 -9.80317 -9.71786 -9.58249 -9.08265 -8.96711 -8.83397 -6.96064 -5.77977 -3.06090 0.96032 2.05492 2.33206 2.60044 2.85735 3.42822 3.48590 3.49760 3.53707 4.05652 4.33163 4.53199 4.57668 4.59976 4.65159 4.75183 4.83450 4.91017 4.93076 4.97732 5.02592 5.08003 5.11954 5.14504 5.47798 5.49565 5.55988 5.67753 5.68908 5.73333 5.86462 5.91612 5.93086 6.00751 6.07280 6.25717 6.34149 6.44778 6.50726 6.52236 6.65528 6.75545 6.97675 7.12559 7.38344 7.51579 7.70011 8.22965 8.41161 9.52314 10.10256 10.44602 11.44781 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.001901 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.670536 B =14728.432267 C =15552.389921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.041 4.041 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.357 6.357 8 C 0.043 3.957 9 C 0.515 3.485 10 O -0.524 6.524 11 N -0.715 5.715 12 C 0.150 3.850 13 C -0.130 4.130 14 C -0.132 4.132 15 C 0.177 3.823 16 N -0.725 5.725 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.124 4.124 26 C -0.122 4.122 27 O -0.195 6.195 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.186 0.814 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.402 0.598 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.382 0.618 44 H 0.254 0.746 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.683 0.892 -6.408 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.094 4.094 3 C -0.184 4.184 4 N -0.187 5.187 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.274 6.274 8 C -0.037 4.037 9 C 0.299 3.701 10 O -0.399 6.399 11 N -0.369 5.369 12 C 0.047 3.953 13 C -0.169 4.169 14 C -0.172 4.172 15 C 0.067 3.933 16 N -0.365 5.365 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.163 4.163 26 C -0.160 4.160 27 O -0.081 6.081 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.203 0.797 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.238 0.762 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.216 0.784 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.590 1.699 -5.500 27.206 hybrid contribution 0.761 -0.153 -0.518 0.933 sum -25.830 1.546 -6.017 26.566 Atomic orbital electron populations 1.20316 0.83740 1.04519 1.04043 1.23576 0.95187 0.84540 1.06096 1.23123 0.87593 1.00577 1.07090 1.70435 1.23288 1.09065 1.15938 1.25524 0.83839 0.89954 1.02529 1.20491 0.89120 0.96462 0.85616 1.88065 1.45629 1.69826 1.23893 1.22306 0.89603 0.95978 0.95765 1.20049 0.80875 0.79034 0.90112 1.90731 1.49460 1.48084 1.51593 1.46003 1.29695 1.51958 1.09288 1.20980 0.98214 0.95392 0.80754 1.21938 0.96984 0.97872 1.00097 1.22212 0.94523 1.01140 0.99334 1.20236 0.86340 0.91110 0.95615 1.42412 1.06266 1.71546 1.16309 1.19248 0.88845 1.30582 0.98093 0.91233 1.24720 0.97995 1.01881 0.96412 1.69649 1.26783 1.51686 1.10168 0.86217 0.83343 0.78873 0.77940 1.21766 1.21823 1.20796 1.21814 0.95164 1.00346 0.98947 1.21802 0.96593 0.95715 1.01940 1.84390 1.17731 1.36623 1.69368 0.90245 0.89062 0.89169 0.79689 0.88229 0.89858 0.89273 0.89697 0.76213 0.89910 0.92229 0.91358 0.92126 0.92850 0.93536 0.78436 0.93584 0.91446 0.92644 0.90305 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.01 0.38 0.07 16 2 C -0.04 -0.37 7.39 -35.69 -0.26 -0.63 16 3 C -0.04 -0.45 11.80 -17.77 -0.21 -0.66 16 4 N -0.46 -5.91 11.29 -11.10 -0.13 -6.03 16 5 C 0.19 2.23 7.97 -12.95 -0.10 2.12 16 6 C 0.16 1.47 6.56 36.00 0.24 1.70 16 7 O -0.36 -4.47 9.86 -55.14 -0.54 -5.01 16 8 C 0.04 0.42 6.42 36.01 0.23 0.65 16 9 C 0.51 6.90 7.87 -10.98 -0.09 6.81 16 10 O -0.52 -9.41 16.16 -14.35 -0.23 -9.64 16 11 N -0.72 -8.45 4.23 -53.81 -0.23 -8.68 16 12 C 0.15 1.92 2.78 -67.93 -0.19 1.73 16 13 C -0.13 -1.91 5.60 -26.74 -0.15 -2.06 16 14 C -0.13 -2.29 5.34 -26.73 -0.14 -2.43 16 15 C 0.18 3.28 2.77 -67.93 -0.19 3.09 16 16 N -0.73 -17.38 5.12 -53.43 -0.27 -17.65 16 17 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.12 -1.79 5.22 -26.73 -0.14 -1.93 16 26 C -0.12 -1.42 5.61 -26.73 -0.15 -1.57 16 27 O -0.19 -2.21 10.78 5.37 0.06 -2.15 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.19 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.40 4.02 6.87 -40.82 -0.28 3.74 16 37 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.93 7.60 -51.93 -0.39 0.54 16 42 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 43 H 0.38 9.68 7.80 -40.82 -0.32 9.36 16 44 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.75 6.51 -51.93 -0.34 0.41 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -36.76 397.05 -8.29 -45.06 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.61 Total: 8.02 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.02 Total: -0.18 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.10 Total: -59.32 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.72 Total: -16.80 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.76 -8.29 -45.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752851194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.444 kcal (2) G-P(sol) polarization free energy of solvation -36.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds