Wall clock time and date at job start Tue Mar 31 2020 19:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34323 * 126.44156 * 2 1 4 4 N 1.34479 * 107.66518 * 179.76902 * 3 2 1 5 5 C 1.30261 * 108.70266 * 0.42460 * 4 3 2 6 6 C 1.50694 * 125.61949 * 179.84154 * 5 4 3 7 7 O 1.42898 * 109.47364 * 89.69448 * 6 5 4 8 8 C 1.42906 * 113.99828 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46702 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47234 * 275.00436 * 12 11 9 14 14 C 1.52992 * 109.47146 * 299.99812 * 13 12 11 15 15 C 1.53002 * 109.47376 * 299.99886 * 14 13 12 16 16 N 1.46496 * 109.47354 * 180.02562 * 15 14 13 17 17 C 1.36933 * 120.00336 * 85.00500 * 16 15 14 18 18 H 1.08010 * 119.99792 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00135 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00254 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47087 * 89.99584 * 21 19 17 23 23 H 1.48500 * 109.47024 * 209.99988 * 21 19 17 24 24 H 1.48504 * 109.46790 * 329.99801 * 21 19 17 25 25 C 1.52998 * 109.46890 * 59.99957 * 15 14 13 26 26 C 1.52998 * 109.47246 * 155.00083 * 12 11 9 27 27 O 1.33970 * 108.75531 * 359.57055 * 5 4 3 28 28 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46611 * 299.99926 * 1 2 3 30 30 H 1.08999 * 109.46976 * 59.99878 * 1 2 3 31 31 H 1.07998 * 126.17344 * 0.02800 * 3 2 1 32 32 H 1.09000 * 109.47609 * 329.68923 * 6 5 4 33 33 H 1.09002 * 109.47072 * 209.69438 * 6 5 4 34 34 H 1.09000 * 109.46890 * 59.99811 * 8 7 6 35 35 H 1.09000 * 109.47141 * 299.99454 * 8 7 6 36 36 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.46776 * 35.00022 * 12 11 9 38 38 H 1.09001 * 109.47093 * 59.99825 * 13 12 11 39 39 H 1.09002 * 109.47121 * 179.97438 * 13 12 11 40 40 H 1.09007 * 109.47184 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47274 * 59.99894 * 14 13 12 42 42 H 1.09002 * 109.46925 * 300.00221 * 15 14 13 43 43 H 0.97003 * 119.99620 * 264.99296 * 16 15 14 44 44 H 0.96995 * 120.00291 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.47657 * 180.02562 * 25 15 14 46 46 H 1.09002 * 109.47080 * 59.99828 * 25 15 14 47 47 H 1.09002 * 109.46987 * 180.02562 * 26 12 11 48 48 H 1.08997 * 109.47162 * 300.00499 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5765 -0.6549 -0.0009 6 6 4.8004 -1.5341 -0.0014 7 8 5.1877 -1.8124 1.3456 8 6 6.3444 -2.6440 1.4578 9 6 6.6607 -2.8706 2.9138 10 8 5.9646 -2.3689 3.7708 11 7 7.7173 -3.6308 3.2634 12 6 8.0253 -3.8507 4.6786 13 6 8.8734 -2.6900 5.2023 14 6 10.1758 -2.6090 4.4037 15 6 10.9518 -3.9185 4.5593 16 7 12.1992 -3.8407 3.7951 17 6 13.3104 -3.2687 4.3545 18 1 13.2671 -2.8743 5.3591 19 6 14.4925 -3.1955 3.6305 20 7 14.5454 -3.6765 2.4065 21 14 16.0082 -2.4145 4.3934 22 1 16.7972 -3.4539 5.1021 23 1 16.8404 -1.8032 3.3261 24 1 15.5919 -1.3653 5.3584 25 6 10.1037 -5.0792 4.0356 26 6 8.8011 -5.1601 4.8343 27 8 2.3074 -1.0840 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9823 2.1112 0.0004 32 1 5.6146 -1.0232 -0.5154 33 1 4.5761 -2.4687 -0.5155 34 1 7.1907 -2.1565 0.9740 35 1 6.1516 -3.6017 0.9742 36 1 8.2743 -4.0317 2.5779 37 1 7.0973 -3.9083 5.2476 38 1 8.3206 -1.7571 5.0914 39 1 9.1021 -2.8533 6.2555 40 1 10.7803 -1.7823 4.7771 41 1 9.9467 -2.4455 3.3506 42 1 11.1809 -4.0820 5.6124 43 1 12.2379 -4.1947 2.8928 44 1 15.3715 -3.6257 1.9007 45 1 10.6562 -6.0121 4.1469 46 1 9.8745 -4.9155 2.9826 47 1 9.0298 -5.3239 5.8874 48 1 8.1969 -5.9870 4.4612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752851194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:52 Heat of formation + Delta-G solvation = -80.243821 kcal Electronic energy + Delta-G solvation = -28567.844505 eV Core-core repulsion = 24430.599660 eV Total energy + Delta-G solvation = -4137.244846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41262 -41.26800 -39.57856 -38.49479 -36.25133 -35.85987 -34.33425 -33.72820 -32.55746 -31.68044 -30.71270 -29.44565 -27.97637 -26.11832 -25.55261 -23.48995 -23.40035 -22.56232 -22.20826 -22.02114 -20.18523 -19.09028 -18.80673 -18.30589 -17.85236 -17.36106 -17.32461 -16.93053 -16.37187 -16.16988 -16.02501 -15.67410 -15.37034 -15.15088 -14.99945 -14.79756 -14.51478 -14.17453 -13.88625 -13.88346 -13.59870 -13.31712 -13.22900 -13.08270 -13.06746 -12.99878 -12.82562 -12.77327 -12.46945 -12.15523 -12.01071 -11.99490 -11.68197 -11.65122 -11.29687 -11.08615 -10.91991 -10.87501 -10.80442 -10.01295 -9.77418 -8.95464 -7.92560 -5.18930 0.22231 1.34198 1.47604 1.47958 1.56133 1.59934 1.62278 2.00418 2.57233 2.82631 3.31360 3.40731 3.70705 3.76109 3.78829 3.90032 3.92435 3.99548 4.07395 4.18858 4.23252 4.29540 4.33688 4.36425 4.40957 4.46240 4.61205 4.62280 4.67556 4.68349 4.70263 4.85133 4.98394 5.04643 5.11404 5.13617 5.18451 5.24847 5.28275 5.32888 5.50311 5.57512 5.60258 5.67185 5.82237 6.31282 6.57576 6.62034 7.25627 7.37520 8.15814 8.38320 9.30614 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.001901 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.670536 B =14728.432267 C =15552.389921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.038 4.038 3 C -0.069 4.069 4 N -0.493 5.493 5 C 0.166 3.834 6 C 0.159 3.841 7 O -0.395 6.395 8 C 0.044 3.956 9 C 0.509 3.491 10 O -0.577 6.577 11 N -0.705 5.705 12 C 0.153 3.847 13 C -0.121 4.121 14 C -0.119 4.119 15 C 0.172 3.828 16 N -0.735 5.735 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.965 3.035 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.275 1.275 25 C -0.115 4.115 26 C -0.108 4.108 27 O -0.208 6.208 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.209 0.791 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.413 0.587 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.195 -0.064 -6.759 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 C -0.207 4.207 4 N -0.224 5.224 5 C -0.040 4.040 6 C 0.082 3.918 7 O -0.313 6.313 8 C -0.034 4.034 9 C 0.296 3.704 10 O -0.456 6.456 11 N -0.360 5.360 12 C 0.049 3.951 13 C -0.160 4.160 14 C -0.159 4.159 15 C 0.064 3.936 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.795 3.205 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.200 1.200 25 C -0.153 4.153 26 C -0.147 4.147 27 O -0.095 6.095 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.226 0.774 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.251 0.749 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.121 0.726 -5.840 28.730 hybrid contribution 1.137 0.190 -0.370 1.211 sum -26.984 0.917 -6.210 27.704 Atomic orbital electron populations 1.20566 0.80478 1.05479 1.05882 1.24452 0.96891 0.83746 1.04020 1.23612 0.87028 1.02136 1.07969 1.70398 1.25021 1.10050 1.16930 1.26104 0.84727 0.90192 1.02981 1.20789 0.88633 0.97829 0.84511 1.87998 1.46632 1.70683 1.26025 1.22455 0.89743 0.97954 0.93273 1.20767 0.80219 0.77962 0.91427 1.90706 1.51285 1.50221 1.53385 1.45943 1.29392 1.51416 1.09214 1.20905 0.97823 0.94985 0.81378 1.21845 0.95513 0.98331 1.00343 1.22001 0.95221 0.99257 0.99465 1.20471 0.85190 0.93276 0.94702 1.42596 1.07367 1.71190 1.16314 1.19576 0.89895 1.29349 0.97971 0.91252 1.25433 1.00731 1.03395 0.97074 1.69781 1.27078 1.53531 1.11367 0.85266 0.80108 0.78128 0.77043 1.21430 1.22327 1.20010 1.21695 0.95654 0.97983 0.99975 1.21731 0.94966 0.95783 1.02186 1.84395 1.17971 1.37573 1.69515 0.89700 0.87521 0.86794 0.77419 0.86843 0.86543 0.87230 0.85591 0.74887 0.89950 0.93749 0.90469 0.95215 0.93072 0.94407 0.79407 0.94150 0.91772 0.91456 0.89443 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.24 0.74 0.28 16 2 C -0.04 -0.66 7.39 24.79 0.18 -0.48 16 3 C -0.07 -1.37 11.80 83.39 0.98 -0.39 16 4 N -0.49 -12.92 11.29 -303.83 -3.43 -16.35 16 5 C 0.17 3.92 7.97 88.34 0.70 4.63 16 6 C 0.16 2.72 6.56 71.23 0.47 3.19 16 7 O -0.39 -9.54 9.86 -129.94 -1.28 -10.83 16 8 C 0.04 0.77 6.42 71.24 0.46 1.23 16 9 C 0.51 13.02 7.87 87.66 0.69 13.71 16 10 O -0.58 -20.77 16.16 16.01 0.26 -20.51 16 11 N -0.71 -15.23 4.23 -442.54 -1.87 -17.10 16 12 C 0.15 3.63 2.78 44.99 0.13 3.76 16 13 C -0.12 -3.48 5.60 30.59 0.17 -3.31 16 14 C -0.12 -4.12 5.34 30.59 0.16 -3.96 16 15 C 0.17 6.25 2.77 44.99 0.12 6.37 16 16 N -0.74 -35.27 5.12 -322.94 -1.65 -36.92 16 17 C -0.24 -12.88 9.93 84.03 0.83 -12.04 16 18 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.97 -57.86 13.06 21.65 0.28 -57.58 16 21 Si 0.96 46.06 29.55 68.60 2.03 48.08 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 25 C -0.11 -3.06 5.22 30.60 0.16 -2.90 16 26 C -0.11 -2.19 5.61 30.60 0.17 -2.02 16 27 O -0.21 -4.64 10.78 -3.70 -0.04 -4.68 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.21 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.41 7.10 6.87 -92.71 -0.64 6.47 16 37 H 0.08 2.06 7.58 -2.39 -0.02 2.04 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.05 1.77 7.60 -2.39 -0.02 1.75 16 42 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 43 H 0.37 18.99 7.80 -92.71 -0.72 18.27 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 1.64 6.51 -2.39 -0.02 1.63 16 47 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -82.57 397.05 0.36 -82.21 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.38 Total: 29.34 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.45 Total: 4.34 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -6.68 Total: -127.95 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.06 Total: -36.02 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -82.57 0.36 -82.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752851194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.971 kcal (2) G-P(sol) polarization free energy of solvation -82.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds