Wall clock time and date at job start Tue Mar 31 2020 19:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34328 * 126.43957 * 2 1 4 4 N 1.34485 * 107.66283 * 179.76206 * 3 2 1 5 5 C 1.30251 * 108.70287 * 0.41921 * 4 3 2 6 6 C 1.50697 * 125.61815 * 179.83597 * 5 4 3 7 7 O 1.42905 * 109.46812 * 89.69793 * 6 5 4 8 8 C 1.42903 * 113.99852 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47106 * 179.97438 * 8 7 6 10 10 O 1.21273 * 119.99827 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99929 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99936 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47176 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46947 * 180.02562 * 13 12 11 15 15 H 1.08996 * 110.64188 * 303.30672 * 14 13 12 16 16 C 1.55167 * 110.86767 * 180.02562 * 14 13 12 17 17 C 1.55140 * 101.48205 * 205.89724 * 16 14 13 18 18 N 1.47426 * 104.71884 * 37.29810 * 17 16 14 19 19 C 1.36939 * 125.64553 * 155.81775 * 18 17 16 20 20 H 1.07997 * 119.99728 * 179.41197 * 19 18 17 21 21 C 1.38815 * 119.99845 * 359.69111 * 19 18 17 22 22 N 1.31619 * 119.99884 * 359.72042 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 179.72678 * 21 19 18 24 24 H 1.48498 * 109.47416 * 59.99578 * 23 21 19 25 25 H 1.48508 * 109.46609 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46903 * 299.99163 * 23 21 19 27 27 C 1.47017 * 108.70306 * 335.54918 * 18 17 16 28 28 O 1.33963 * 108.76213 * 359.57749 * 5 4 3 29 29 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47865 * 300.00735 * 1 2 3 31 31 H 1.09005 * 109.47127 * 60.00851 * 1 2 3 32 32 H 1.07999 * 126.16733 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47576 * 329.69795 * 6 5 4 34 34 H 1.08999 * 109.47366 * 209.69314 * 6 5 4 35 35 H 1.09000 * 109.47017 * 60.00089 * 8 7 6 36 36 H 1.08993 * 109.47521 * 300.00129 * 8 7 6 37 37 H 0.97003 * 119.99852 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.46959 * 60.00164 * 12 11 9 39 39 H 1.08997 * 109.46994 * 299.99977 * 12 11 9 40 40 H 1.09000 * 109.47077 * 60.00194 * 13 12 11 41 41 H 1.08997 * 109.47106 * 299.99867 * 13 12 11 42 42 H 1.08997 * 111.00435 * 324.13709 * 16 14 13 43 43 H 1.08997 * 111.00229 * 87.95375 * 16 14 13 44 44 H 1.08994 * 110.49646 * 278.45386 * 17 16 14 45 45 H 1.09000 * 110.33762 * 156.05529 * 17 16 14 46 46 H 0.97000 * 119.99517 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.87978 * 120.71058 * 27 18 17 48 48 H 1.09007 * 109.88391 * 241.86814 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0005 6 6 4.8004 -1.5339 -0.0010 7 8 5.1875 -1.8120 1.3462 8 6 6.3442 -2.6436 1.4587 9 6 6.6605 -2.8700 2.9146 10 8 5.9638 -2.3690 3.7715 11 7 7.7177 -3.6292 3.2644 12 6 8.0249 -3.8498 4.6797 13 6 9.2641 -4.7390 4.8001 14 6 9.5845 -4.9698 6.2783 15 1 9.7222 -4.0197 6.7945 16 6 10.8389 -5.8691 6.4381 17 6 10.5867 -6.5064 7.8299 18 7 9.1315 -6.7383 7.8776 19 6 8.4967 -7.6679 8.6573 20 1 7.4206 -7.7537 8.6271 21 6 9.2359 -8.4960 9.4908 22 7 10.5475 -8.3913 9.5276 23 14 8.3693 -9.7588 10.5601 24 1 7.6119 -10.7013 9.6980 25 1 9.3757 -10.5118 11.3511 26 1 7.4316 -9.0676 11.4811 27 6 8.4744 -5.8018 6.9542 28 8 2.3075 -1.0840 -0.0003 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.9820 2.1113 0.0004 33 1 5.6146 -1.0230 -0.5149 34 1 4.5762 -2.4686 -0.5148 35 1 7.1906 -2.1561 0.9749 36 1 6.1517 -3.6013 0.9752 37 1 8.2752 -4.0297 2.5790 38 1 7.1787 -4.3378 5.1634 39 1 8.2170 -2.8920 5.1633 40 1 10.1101 -4.2506 4.3166 41 1 9.0724 -5.6968 4.3165 42 1 10.8767 -6.6291 5.6577 43 1 11.7502 -5.2711 6.4429 44 1 10.8880 -5.8223 8.6232 45 1 11.1243 -7.4505 7.9173 46 1 11.0640 -8.9703 10.1097 47 1 7.9152 -6.3558 6.2001 48 1 7.8036 -5.1447 7.5077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753330025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:16 Heat of formation + Delta-G solvation = -32.873189 kcal Electronic energy + Delta-G solvation = -27591.083798 eV Core-core repulsion = 23455.893097 eV Total energy + Delta-G solvation = -4135.190701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.73371 -39.97418 -38.22804 -37.66606 -35.21959 -35.12933 -33.21572 -33.05079 -31.10348 -30.08812 -29.05019 -27.91950 -26.23495 -25.52475 -24.54180 -22.73440 -22.31869 -21.53190 -20.90097 -20.07965 -19.31144 -17.98731 -17.67073 -17.04119 -16.89956 -16.70862 -16.63644 -15.64781 -15.55320 -15.11913 -15.02685 -14.67579 -14.46416 -13.98712 -13.67216 -13.66654 -13.60223 -13.46141 -12.87900 -12.66302 -12.53106 -12.41637 -12.25554 -11.88502 -11.71248 -11.69337 -11.56774 -11.05213 -10.94230 -10.89573 -10.72842 -10.35177 -10.16956 -10.13229 -9.96684 -9.84437 -9.72062 -9.43298 -9.15390 -9.15139 -8.61633 -6.78575 -5.61357 -3.02990 0.88583 1.97004 2.25506 2.45702 2.71926 3.42712 3.43028 3.46833 3.48329 3.92560 4.25989 4.40784 4.51028 4.52443 4.56767 4.63741 4.67801 4.75279 4.89489 4.93795 4.94432 5.08816 5.10626 5.29905 5.41757 5.50909 5.61373 5.62008 5.64178 5.79031 5.85823 5.89900 6.02705 6.17280 6.23076 6.30115 6.40398 6.43273 6.62727 6.66003 6.79681 7.00763 7.30015 7.33093 7.55832 7.66973 7.89385 8.07596 8.40931 9.26481 9.87591 10.52976 11.42121 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.001534 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.370703 B =18248.246885 C =19311.625635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.037 4.037 3 C -0.046 4.046 4 N -0.458 5.458 5 C 0.186 3.814 6 C 0.162 3.838 7 O -0.357 6.357 8 C 0.046 3.954 9 C 0.510 3.490 10 O -0.516 6.516 11 N -0.727 5.727 12 C 0.118 3.882 13 C -0.115 4.115 14 C -0.098 4.098 15 H 0.072 0.928 16 C -0.138 4.138 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.139 3.861 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.400 0.600 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.010 0.990 45 H 0.106 0.894 46 H 0.252 0.748 47 H 0.023 0.977 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 15.355 -25.965 32.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.185 4.185 4 N -0.188 5.188 5 C -0.021 4.021 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.034 4.034 9 C 0.294 3.706 10 O -0.390 6.390 11 N -0.380 5.380 12 C -0.004 4.004 13 C -0.153 4.153 14 C -0.118 4.118 15 H 0.090 0.910 16 C -0.177 4.177 17 C 0.025 3.975 18 N -0.331 5.331 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.013 3.987 28 O -0.080 6.080 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.234 0.766 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.028 0.972 45 H 0.124 0.876 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -11.172 15.922 -24.979 31.659 hybrid contribution -0.682 -1.158 0.117 1.350 sum -11.855 14.763 -24.863 31.251 Atomic orbital electron populations 1.20332 0.83675 1.04634 1.04101 1.23603 0.95231 0.84484 1.05747 1.23118 0.87554 1.00592 1.07223 1.70411 1.23367 1.09043 1.15995 1.25481 0.83907 0.89940 1.02767 1.20478 0.89126 0.96488 0.85491 1.88091 1.45590 1.69713 1.23996 1.22270 0.89536 0.96062 0.95537 1.20099 0.81017 0.79228 0.90241 1.90775 1.48613 1.48025 1.51633 1.45933 1.30230 1.52349 1.09535 1.21536 0.98591 1.00205 0.80097 1.21779 0.96089 0.99461 0.98012 1.22101 0.97546 0.98962 0.93188 0.90951 1.23074 0.95358 0.97964 1.01278 1.21991 0.85489 1.00539 0.89460 1.44516 1.02469 1.38783 1.47351 1.19057 0.91181 1.09061 1.15694 0.90605 1.24781 0.95714 1.00112 1.00186 1.69786 1.03976 1.41490 1.41976 0.86153 0.78123 0.81102 0.80133 1.21208 1.21571 1.21247 1.21367 0.93604 0.91338 0.92358 1.84398 1.17692 1.36634 1.69286 0.90166 0.88971 0.89123 0.79646 0.88350 0.89807 0.89545 0.89580 0.76609 0.90780 0.91352 0.91586 0.91139 0.92184 0.92526 0.97161 0.87585 0.93761 0.95960 0.96283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.00 0.38 0.09 16 2 C -0.04 -0.32 7.39 -35.69 -0.26 -0.58 16 3 C -0.05 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.46 -5.39 11.29 -11.10 -0.13 -5.52 16 5 C 0.19 2.00 7.97 -12.95 -0.10 1.90 16 6 C 0.16 1.24 6.56 36.00 0.24 1.47 16 7 O -0.36 -3.98 9.86 -55.14 -0.54 -4.53 16 8 C 0.05 0.35 6.42 36.01 0.23 0.59 16 9 C 0.51 6.18 7.91 -10.99 -0.09 6.10 16 10 O -0.52 -9.17 16.50 -14.35 -0.24 -9.41 16 11 N -0.73 -7.25 5.56 -60.30 -0.33 -7.58 16 12 C 0.12 1.50 5.52 -4.04 -0.02 1.47 16 13 C -0.12 -1.42 4.73 -26.73 -0.13 -1.55 16 14 C -0.10 -1.64 2.97 -88.78 -0.26 -1.91 16 15 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 16 C -0.14 -2.54 6.55 -24.45 -0.16 -2.70 16 17 C 0.15 3.67 5.91 -2.40 -0.01 3.66 16 18 N -0.61 -15.81 3.39 -169.93 -0.58 -16.38 16 19 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 22 N -0.92 -27.20 10.08 55.49 0.56 -26.64 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.14 2.93 5.98 -3.07 -0.02 2.92 16 28 O -0.19 -2.08 10.78 5.36 0.06 -2.02 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.40 2.51 8.47 -40.82 -0.35 2.16 16 38 H 0.07 1.10 7.49 -51.93 -0.39 0.71 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 42 H 0.06 1.07 8.05 -51.93 -0.42 0.66 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.11 2.91 5.85 -51.93 -0.30 2.61 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.47 7.76 -51.93 -0.40 0.06 16 48 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -38.67 399.96 -8.62 -47.28 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.74 Total: -2.51 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.68 Total: 3.89 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.48 Total: -56.13 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.72 Total: -15.96 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.67 -8.62 -47.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753330025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.408 kcal (2) G-P(sol) polarization free energy of solvation -38.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds