Wall clock time and date at job start Tue Mar 31 2020 19:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34328 * 126.43957 * 2 1 4 4 N 1.34485 * 107.66283 * 179.76206 * 3 2 1 5 5 C 1.30251 * 108.70287 * 0.41921 * 4 3 2 6 6 C 1.50697 * 125.61815 * 179.83597 * 5 4 3 7 7 O 1.42905 * 109.46812 * 89.69793 * 6 5 4 8 8 C 1.42903 * 113.99852 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47106 * 179.97438 * 8 7 6 10 10 O 1.21273 * 119.99827 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99929 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99936 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47176 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46947 * 180.02562 * 13 12 11 15 15 H 1.08996 * 110.64188 * 303.30672 * 14 13 12 16 16 C 1.55167 * 110.86767 * 180.02562 * 14 13 12 17 17 C 1.55140 * 101.48205 * 205.89724 * 16 14 13 18 18 N 1.47426 * 104.71884 * 37.29810 * 17 16 14 19 19 C 1.36939 * 125.64553 * 155.81775 * 18 17 16 20 20 H 1.07997 * 119.99728 * 179.41197 * 19 18 17 21 21 C 1.38815 * 119.99845 * 359.69111 * 19 18 17 22 22 N 1.31619 * 119.99884 * 359.72042 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 179.72678 * 21 19 18 24 24 H 1.48498 * 109.47416 * 59.99578 * 23 21 19 25 25 H 1.48508 * 109.46609 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46903 * 299.99163 * 23 21 19 27 27 C 1.47017 * 108.70306 * 335.54918 * 18 17 16 28 28 O 1.33963 * 108.76213 * 359.57749 * 5 4 3 29 29 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47865 * 300.00735 * 1 2 3 31 31 H 1.09005 * 109.47127 * 60.00851 * 1 2 3 32 32 H 1.07999 * 126.16733 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47576 * 329.69795 * 6 5 4 34 34 H 1.08999 * 109.47366 * 209.69314 * 6 5 4 35 35 H 1.09000 * 109.47017 * 60.00089 * 8 7 6 36 36 H 1.08993 * 109.47521 * 300.00129 * 8 7 6 37 37 H 0.97003 * 119.99852 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.46959 * 60.00164 * 12 11 9 39 39 H 1.08997 * 109.46994 * 299.99977 * 12 11 9 40 40 H 1.09000 * 109.47077 * 60.00194 * 13 12 11 41 41 H 1.08997 * 109.47106 * 299.99867 * 13 12 11 42 42 H 1.08997 * 111.00435 * 324.13709 * 16 14 13 43 43 H 1.08997 * 111.00229 * 87.95375 * 16 14 13 44 44 H 1.08994 * 110.49646 * 278.45386 * 17 16 14 45 45 H 1.09000 * 110.33762 * 156.05529 * 17 16 14 46 46 H 0.97000 * 119.99517 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.87978 * 120.71058 * 27 18 17 48 48 H 1.09007 * 109.88391 * 241.86814 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0005 6 6 4.8004 -1.5339 -0.0010 7 8 5.1875 -1.8120 1.3462 8 6 6.3442 -2.6436 1.4587 9 6 6.6605 -2.8700 2.9146 10 8 5.9638 -2.3690 3.7715 11 7 7.7177 -3.6292 3.2644 12 6 8.0249 -3.8498 4.6797 13 6 9.2641 -4.7390 4.8001 14 6 9.5845 -4.9698 6.2783 15 1 9.7222 -4.0197 6.7945 16 6 10.8389 -5.8691 6.4381 17 6 10.5867 -6.5064 7.8299 18 7 9.1315 -6.7383 7.8776 19 6 8.4967 -7.6679 8.6573 20 1 7.4206 -7.7537 8.6271 21 6 9.2359 -8.4960 9.4908 22 7 10.5475 -8.3913 9.5276 23 14 8.3693 -9.7588 10.5601 24 1 7.6119 -10.7013 9.6980 25 1 9.3757 -10.5118 11.3511 26 1 7.4316 -9.0676 11.4811 27 6 8.4744 -5.8018 6.9542 28 8 2.3075 -1.0840 -0.0003 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.9820 2.1113 0.0004 33 1 5.6146 -1.0230 -0.5149 34 1 4.5762 -2.4686 -0.5148 35 1 7.1906 -2.1561 0.9749 36 1 6.1517 -3.6013 0.9752 37 1 8.2752 -4.0297 2.5790 38 1 7.1787 -4.3378 5.1634 39 1 8.2170 -2.8920 5.1633 40 1 10.1101 -4.2506 4.3166 41 1 9.0724 -5.6968 4.3165 42 1 10.8767 -6.6291 5.6577 43 1 11.7502 -5.2711 6.4429 44 1 10.8880 -5.8223 8.6232 45 1 11.1243 -7.4505 7.9173 46 1 11.0640 -8.9703 10.1097 47 1 7.9152 -6.3558 6.2001 48 1 7.8036 -5.1447 7.5077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753330025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:15 Heat of formation + Delta-G solvation = -62.941596 kcal Electronic energy + Delta-G solvation = -27592.387662 eV Core-core repulsion = 23455.893097 eV Total energy + Delta-G solvation = -4136.494565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.40974 -40.88317 -39.46500 -38.72673 -36.44324 -35.85665 -34.77113 -33.73428 -32.61883 -31.03908 -30.43623 -28.89721 -27.62611 -26.41529 -25.98183 -23.60597 -23.39759 -22.20438 -22.02439 -21.72748 -20.70336 -18.90141 -18.70749 -18.34705 -17.77152 -17.43367 -17.40452 -16.99882 -16.57042 -16.41784 -16.01862 -15.79773 -15.51906 -15.35753 -14.77754 -14.62113 -14.27481 -14.17030 -13.89587 -13.79907 -13.54127 -13.34613 -13.32256 -13.22398 -13.05502 -13.00164 -12.81694 -12.67534 -12.46456 -12.22063 -12.03137 -11.76922 -11.66358 -11.55457 -11.42756 -11.24030 -10.89857 -10.88005 -10.73899 -10.11807 -9.77516 -8.87647 -7.77317 -5.22069 0.22569 1.34731 1.44621 1.48025 1.54553 1.57640 1.63155 1.96673 2.49135 2.82622 3.30009 3.32264 3.71449 3.75425 3.76647 3.79424 3.96214 3.99982 4.08414 4.17920 4.20176 4.25178 4.30476 4.34296 4.38790 4.47290 4.61490 4.64714 4.66435 4.73307 4.75191 4.89379 4.97727 5.03973 5.13261 5.13695 5.19922 5.24961 5.27936 5.41999 5.43768 5.52604 5.70095 5.83778 5.84441 6.33073 6.57938 6.61375 7.11736 7.26171 7.79844 8.43518 9.23537 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.001534 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.370703 B =18248.246885 C =19311.625635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.068 4.068 4 N -0.490 5.490 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.401 6.401 8 C 0.050 3.950 9 C 0.502 3.498 10 O -0.585 6.585 11 N -0.708 5.708 12 C 0.123 3.877 13 C -0.097 4.097 14 C -0.086 4.086 15 H 0.076 0.924 16 C -0.120 4.120 17 C 0.147 3.853 18 N -0.629 5.629 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.067 4.067 22 N -0.947 5.947 23 Si 0.980 3.020 24 H -0.276 1.276 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.133 3.867 28 O -0.210 6.210 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.210 0.790 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.423 0.577 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.086 0.914 44 H -0.018 1.018 45 H 0.073 0.927 46 H 0.247 0.753 47 H 0.027 0.973 48 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 15.476 -28.791 34.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.206 4.206 4 N -0.222 5.222 5 C -0.042 4.042 6 C 0.084 3.916 7 O -0.320 6.320 8 C -0.029 4.029 9 C 0.289 3.711 10 O -0.465 6.465 11 N -0.363 5.363 12 C -0.001 4.001 13 C -0.135 4.135 14 C -0.106 4.106 15 H 0.094 0.906 16 C -0.158 4.158 17 C 0.022 3.978 18 N -0.355 5.355 19 C -0.373 4.373 20 H 0.093 0.907 21 C -0.259 4.259 22 N -0.597 5.597 23 Si 0.808 3.192 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.008 3.992 28 O -0.097 6.097 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.226 0.774 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.000 1.000 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.045 0.955 48 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -11.201 16.035 -27.871 34.050 hybrid contribution -0.717 -1.154 1.018 1.698 sum -11.918 14.881 -26.853 32.933 Atomic orbital electron populations 1.20557 0.80737 1.05379 1.05864 1.24424 0.96851 0.83838 1.04199 1.23605 0.87092 1.02052 1.07842 1.70382 1.24828 1.09955 1.16986 1.26232 0.84787 0.90298 1.02841 1.20822 0.88649 0.97765 0.84358 1.88017 1.47032 1.70693 1.26221 1.22451 0.90078 0.98058 0.92266 1.21033 0.80199 0.77981 0.91879 1.90748 1.50962 1.50848 1.53894 1.45708 1.30001 1.51591 1.08963 1.21276 0.97744 0.99473 0.81590 1.21618 0.97010 1.00145 0.94763 1.22029 0.94759 0.97820 0.95953 0.90568 1.22906 0.97294 0.98391 0.97232 1.21848 0.84584 0.98816 0.92569 1.44864 1.03574 1.39256 1.47803 1.19421 0.91539 1.09908 1.16440 0.90695 1.25630 0.96517 1.02144 1.01641 1.70048 1.05127 1.42097 1.42401 0.85133 0.77043 0.78668 0.78362 1.20150 1.21561 1.20824 1.21570 0.94955 0.90928 0.91710 1.84402 1.18159 1.37640 1.69531 0.89897 0.87650 0.86709 0.77371 0.86034 0.86731 0.85589 0.85765 0.73933 0.93669 0.92361 0.87947 0.90322 0.91113 0.89537 1.00039 0.90889 0.94298 0.95512 0.97541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.24 0.74 0.28 16 2 C -0.04 -0.66 7.39 24.79 0.18 -0.48 16 3 C -0.07 -1.23 11.80 83.39 0.98 -0.25 16 4 N -0.49 -11.60 11.29 -303.84 -3.43 -15.03 16 5 C 0.16 3.51 7.97 88.34 0.70 4.21 16 6 C 0.16 2.16 6.56 71.23 0.47 2.63 16 7 O -0.40 -8.44 9.86 -129.94 -1.28 -9.72 16 8 C 0.05 0.62 6.42 71.24 0.46 1.08 16 9 C 0.50 11.46 7.91 87.66 0.69 12.15 16 10 O -0.59 -21.26 16.50 16.03 0.26 -21.00 16 11 N -0.71 -12.28 5.56 -463.08 -2.57 -14.86 16 12 C 0.12 2.93 5.52 86.38 0.48 3.40 16 13 C -0.10 -2.08 4.73 30.59 0.14 -1.93 16 14 C -0.09 -2.72 2.97 -9.60 -0.03 -2.75 16 15 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 16 C -0.12 -4.17 6.55 32.07 0.21 -3.96 16 17 C 0.15 7.33 5.91 86.94 0.51 7.84 16 18 N -0.63 -33.57 3.39 -691.54 -2.35 -35.92 16 19 C -0.24 -14.25 10.27 84.03 0.86 -13.39 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 22 N -0.95 -57.38 10.08 21.65 0.22 -57.16 16 23 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 27 C 0.13 5.65 5.98 86.73 0.52 6.17 16 28 O -0.21 -4.48 10.78 -3.72 -0.04 -4.52 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.42 3.48 8.47 -92.71 -0.79 2.69 16 38 H 0.04 1.35 7.49 -2.39 -0.02 1.33 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.62 8.06 -2.39 -0.02 1.60 16 42 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 43 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 44 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H 0.07 4.14 5.85 -2.39 -0.01 4.12 16 46 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 47 H 0.03 1.11 7.76 -2.39 -0.02 1.09 16 48 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 Total: -1.00 -91.06 399.96 0.41 -90.65 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.18 Total: 7.16 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 7.40 Total: 11.60 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -8.13 Total: -122.96 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.06 Total: -35.24 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -91.06 0.41 -90.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753330025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.710 kcal (2) G-P(sol) polarization free energy of solvation -91.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds